Galaxy tool sartools_edger fails its tests

[cat-bro]

The sartools_edger python script executes an R script and then expects two directories to exist: figures and tables. The figures directory exists but the tables directory does not, so the python script fails when trying to copy the contents of tables https://github.com/PF2-pasteur-fr/SARTools-Galaxy/blob/master/sartools/abims_sartools_edger_wrapper.py#L108

The conda environment is active ([email protected], installed 2022-09-22 with conda version 4.12.0) so this could be an issue with the conda environment rather than with this script.

[loraine-gueguen]

SARTools edgeR Galaxy Version 1.7.3+galaxy0 runs fine on usegalaxy.fr (I don't know which version of conda is used).
Could you please copy the content of a "SARTools edgeR R log" dataset generated in galaxy that is in error state ?
The rsync error often appears when something failed during the r-script (and output files are not generated)