From ee10c4ab4afbd5e14255522b0ae959d9a0791462 Mon Sep 17 00:00:00 2001 From: Manuel Lera-Ramirez Date: Thu, 26 Jun 2025 17:36:50 +0100 Subject: [PATCH] fix error on images --- process_submission.py | 2 +- .../templates/assembly_template_001.json | 40 +++----------- .../templates/assembly_template_002.json | 45 +++------------ .../templates/assembly_template_003.json | 50 ++++------------- .../templates/assembly_template_004.json | 45 +++------------ .../templates/assembly_template_005.json | 50 ++++------------- .../templates/assembly_template_006.json | 55 ++++--------------- .../templates/assembly_template_001.json | 25 ++------- .../templates/assembly_template_002.json | 25 ++------- .../templates/assembly_template_003.json | 25 ++------- .../templates/assembly_template_004.json | 25 ++------- .../templates/assembly_template_001.json | 40 +++----------- .../templates/assembly_template_002.json | 45 +++------------ .../templates/assembly_template_003.json | 50 ++++------------- .../templates/assembly_template_004.json | 45 +++------------ .../templates/assembly_template_005.json | 50 ++++------------- .../templates/assembly_template_006.json | 55 ++++--------------- .../templates/assembly_template_001.json | 30 ++-------- .../templates/assembly_template_002.json | 15 +---- .../templates/assembly_template_001.json | 40 +++----------- .../templates/assembly_template_002.json | 45 +++------------ .../templates/assembly_template_003.json | 50 ++++------------- .../templates/assembly_template_004.json | 45 +++------------ .../templates/assembly_template_005.json | 50 ++++------------- .../templates/assembly_template_006.json | 55 ++++--------------- 25 files changed, 201 insertions(+), 801 deletions(-) diff --git a/process_submission.py b/process_submission.py index a7a912e..d0d0525 100644 --- a/process_submission.py +++ b/process_submission.py @@ -36,7 +36,7 @@ def main(submission_folder): for i, template in enumerate(submission.to_template_list()): for source in template["sources"]: if "image" in source and source["image"] is not None: - source["image"] = [source["image"], settings["image_width"]] + source["image"][1] = settings["image_width"] # Format i as 001, etc. ii = str(i + 1).zfill(3) assembly_file_name = f"assembly_template_{ii}.json" diff --git a/processed/browse-article-28244182/templates/assembly_template_001.json b/processed/browse-article-28244182/templates/assembly_template_001.json index 4821e8e..3daf54d 100644 --- a/processed/browse-article-28244182/templates/assembly_template_001.json +++ b/processed/browse-article-28244182/templates/assembly_template_001.json @@ -66,10 +66,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -358,10 +355,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -671,10 +665,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "60%" ], "options": [ @@ -774,10 +765,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1045,10 +1033,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1337,10 +1322,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1440,10 +1422,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [] @@ -1458,10 +1437,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/browse-article-28244182/templates/assembly_template_002.json b/processed/browse-article-28244182/templates/assembly_template_002.json index d85ebfc..cac7529 100644 --- a/processed/browse-article-28244182/templates/assembly_template_002.json +++ b/processed/browse-article-28244182/templates/assembly_template_002.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -364,10 +361,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -677,10 +671,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "60%" ], "options": [ @@ -780,10 +771,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "60%" ], "options": [ @@ -862,10 +850,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1133,10 +1118,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1425,10 +1407,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1528,10 +1507,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [] @@ -1546,10 +1522,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/browse-article-28244182/templates/assembly_template_003.json b/processed/browse-article-28244182/templates/assembly_template_003.json index 866d303..ab3b1e0 100644 --- a/processed/browse-article-28244182/templates/assembly_template_003.json +++ b/processed/browse-article-28244182/templates/assembly_template_003.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -370,10 +367,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -683,10 +677,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "60%" ], "options": [ @@ -786,10 +777,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "60%" ], "options": [ @@ -868,10 +856,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "60%" ], "options": [ @@ -971,10 +956,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1116,10 +1098,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1408,10 +1387,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1511,10 +1487,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [] @@ -1529,10 +1502,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/browse-article-28244182/templates/assembly_template_004.json b/processed/browse-article-28244182/templates/assembly_template_004.json index d2b1e53..47df683 100644 --- a/processed/browse-article-28244182/templates/assembly_template_004.json +++ b/processed/browse-article-28244182/templates/assembly_template_004.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -364,10 +361,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -677,10 +671,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "60%" ], "options": [ @@ -780,10 +771,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1051,10 +1039,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1343,10 +1328,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1446,10 +1428,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1507,10 +1486,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -1589,10 +1565,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [ diff --git a/processed/browse-article-28244182/templates/assembly_template_005.json b/processed/browse-article-28244182/templates/assembly_template_005.json index 5bdef4a..206237b 100644 --- a/processed/browse-article-28244182/templates/assembly_template_005.json +++ b/processed/browse-article-28244182/templates/assembly_template_005.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -370,10 +367,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -683,10 +677,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "60%" ], "options": [ @@ -786,10 +777,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "60%" ], "options": [ @@ -868,10 +856,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1139,10 +1124,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1431,10 +1413,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1534,10 +1513,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1595,10 +1571,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -1677,10 +1650,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [ diff --git a/processed/browse-article-28244182/templates/assembly_template_006.json b/processed/browse-article-28244182/templates/assembly_template_006.json index 9fa06df..76d4f81 100644 --- a/processed/browse-article-28244182/templates/assembly_template_006.json +++ b/processed/browse-article-28244182/templates/assembly_template_006.json @@ -84,10 +84,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -376,10 +373,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -689,10 +683,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "60%" ], "options": [ @@ -792,10 +783,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "60%" ], "options": [ @@ -874,10 +862,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "60%" ], "options": [ @@ -977,10 +962,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1122,10 +1104,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1414,10 +1393,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1517,10 +1493,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1578,10 +1551,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -1660,10 +1630,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [ diff --git a/processed/kits-densmore-cidar-moclo/templates/assembly_template_001.json b/processed/kits-densmore-cidar-moclo/templates/assembly_template_001.json index e3e9df6..a53182b 100644 --- a/processed/kits-densmore-cidar-moclo/templates/assembly_template_001.json +++ b/processed/kits-densmore-cidar-moclo/templates/assembly_template_001.json @@ -48,10 +48,7 @@ "title": "Promoter", "description": "Left fusion site is A (GGAG)", "image": [ - [ - "promoter.png", - "60%" - ], + "promoter.png", "60%" ], "options": [ @@ -277,10 +274,7 @@ "title": "RBS", "description": null, "image": [ - [ - "rbs.png", - "60%" - ], + "rbs.png", "60%" ], "options": [ @@ -422,10 +416,7 @@ "title": "CDS", "description": null, "image": [ - [ - "cds.png", - "60%" - ], + "cds.png", "60%" ], "options": [ @@ -630,10 +621,7 @@ "title": "Terminator", "description": "Right fusion site is E (GCTT)", "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "60%" ], "options": [ @@ -670,10 +658,7 @@ "title": "Backbone", "description": "Fusion sites A (GGAG) and E (GCTT)", "image": [ - [ - "backbone.png", - "60%" - ], + "backbone.png", "60%" ], "options": [ diff --git a/processed/kits-densmore-cidar-moclo/templates/assembly_template_002.json b/processed/kits-densmore-cidar-moclo/templates/assembly_template_002.json index ddce587..4883929 100644 --- a/processed/kits-densmore-cidar-moclo/templates/assembly_template_002.json +++ b/processed/kits-densmore-cidar-moclo/templates/assembly_template_002.json @@ -48,10 +48,7 @@ "title": "Promoter", "description": "Left fusion site is E (GCTT)", "image": [ - [ - "promoter.png", - "60%" - ], + "promoter.png", "60%" ], "options": [ @@ -277,10 +274,7 @@ "title": "RBS", "description": null, "image": [ - [ - "rbs.png", - "60%" - ], + "rbs.png", "60%" ], "options": [ @@ -422,10 +416,7 @@ "title": "CDS", "description": null, "image": [ - [ - "cds.png", - "60%" - ], + "cds.png", "60%" ], "options": [ @@ -630,10 +621,7 @@ "title": "Terminator", "description": "Right fusion site is F (CGCT)", "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "60%" ], "options": [ @@ -670,10 +658,7 @@ "title": "Backbone", "description": null, "image": [ - [ - "backbone.png", - "60%" - ], + "backbone.png", "60%" ], "options": [ diff --git a/processed/kits-densmore-cidar-moclo/templates/assembly_template_003.json b/processed/kits-densmore-cidar-moclo/templates/assembly_template_003.json index 096a6d7..b089be8 100644 --- a/processed/kits-densmore-cidar-moclo/templates/assembly_template_003.json +++ b/processed/kits-densmore-cidar-moclo/templates/assembly_template_003.json @@ -48,10 +48,7 @@ "title": "Promoter", "description": "Left fusion site is F (CGCT)", "image": [ - [ - "promoter.png", - "60%" - ], + "promoter.png", "60%" ], "options": [ @@ -277,10 +274,7 @@ "title": "RBS", "description": null, "image": [ - [ - "rbs.png", - "60%" - ], + "rbs.png", "60%" ], "options": [ @@ -422,10 +416,7 @@ "title": "CDS", "description": null, "image": [ - [ - "cds.png", - "60%" - ], + "cds.png", "60%" ], "options": [ @@ -630,10 +621,7 @@ "title": "Terminator", "description": "Right fusion site is G (TGCC)", "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "60%" ], "options": [ @@ -670,10 +658,7 @@ "title": "Backbone", "description": "Fusion sites F (CGCT) and G (TGCC)", "image": [ - [ - "backbone.png", - "60%" - ], + "backbone.png", "60%" ], "options": [ diff --git a/processed/kits-densmore-cidar-moclo/templates/assembly_template_004.json b/processed/kits-densmore-cidar-moclo/templates/assembly_template_004.json index febe89d..296ea9e 100644 --- a/processed/kits-densmore-cidar-moclo/templates/assembly_template_004.json +++ b/processed/kits-densmore-cidar-moclo/templates/assembly_template_004.json @@ -48,10 +48,7 @@ "title": "Promoter", "description": "Left fusion site is G (TGCC)", "image": [ - [ - "promoter.png", - "60%" - ], + "promoter.png", "60%" ], "options": [ @@ -277,10 +274,7 @@ "title": "RBS", "description": null, "image": [ - [ - "rbs.png", - "60%" - ], + "rbs.png", "60%" ], "options": [ @@ -422,10 +416,7 @@ "title": "CDS", "description": null, "image": [ - [ - "cds.png", - "60%" - ], + "cds.png", "60%" ], "options": [ @@ -630,10 +621,7 @@ "title": "Terminator", "description": "Right fusion site is H (ACTA)", "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "60%" ], "options": [ @@ -670,10 +658,7 @@ "title": "Backbone", "description": "Fusion sites G (TGCC) and H (ACTA)", "image": [ - [ - "backbone.png", - "60%" - ], + "backbone.png", "60%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_001.json b/processed/kits-moclo-ytk/templates/assembly_template_001.json index 8364a25..b7df1db 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_001.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_001.json @@ -66,10 +66,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -232,10 +229,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -734,10 +728,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "80%" ], "options": [ @@ -858,10 +849,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1003,10 +991,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1169,10 +1154,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1335,10 +1317,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "80%" ], "options": [ @@ -1396,10 +1375,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "80%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_002.json b/processed/kits-moclo-ytk/templates/assembly_template_002.json index f1ab6b0..b558e44 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_002.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_002.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -238,10 +235,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -740,10 +734,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "80%" ], "options": [ @@ -906,10 +897,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "80%" ], "options": [ @@ -988,10 +976,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1133,10 +1118,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1299,10 +1281,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1465,10 +1444,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "80%" ], "options": [ @@ -1526,10 +1502,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "80%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_003.json b/processed/kits-moclo-ytk/templates/assembly_template_003.json index e7812d5..27a2ae6 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_003.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_003.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -244,10 +241,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -746,10 +740,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "80%" ], "options": [ @@ -912,10 +903,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "80%" ], "options": [ @@ -994,10 +982,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "80%" ], "options": [ @@ -1097,10 +1082,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1242,10 +1224,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1408,10 +1387,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1574,10 +1550,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "80%" ], "options": [ @@ -1635,10 +1608,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "80%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_004.json b/processed/kits-moclo-ytk/templates/assembly_template_004.json index 79c9261..ccba60b 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_004.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_004.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -238,10 +235,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -740,10 +734,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "80%" ], "options": [ @@ -864,10 +855,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1009,10 +997,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1175,10 +1160,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1341,10 +1323,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "80%" ], "options": [ @@ -1423,10 +1402,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "80%" ], "options": [ @@ -1505,10 +1481,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "80%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_005.json b/processed/kits-moclo-ytk/templates/assembly_template_005.json index 1e24de9..be418d4 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_005.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_005.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -244,10 +241,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -746,10 +740,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "80%" ], "options": [ @@ -912,10 +903,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "80%" ], "options": [ @@ -994,10 +982,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1139,10 +1124,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1305,10 +1287,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1471,10 +1450,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "80%" ], "options": [ @@ -1553,10 +1529,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "80%" ], "options": [ @@ -1635,10 +1608,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "80%" ], "options": [ diff --git a/processed/kits-moclo-ytk/templates/assembly_template_006.json b/processed/kits-moclo-ytk/templates/assembly_template_006.json index 489fe3d..d07bad5 100644 --- a/processed/kits-moclo-ytk/templates/assembly_template_006.json +++ b/processed/kits-moclo-ytk/templates/assembly_template_006.json @@ -84,10 +84,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "80%" ], "options": [ @@ -250,10 +247,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "80%" ], "options": [ @@ -752,10 +746,7 @@ "title": "N-term part", "description": "You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ser for fusion.", "image": [ - [ - "glyph_3a.png", - "60%" - ], + "glyph_3a.png", "80%" ], "options": [ @@ -918,10 +909,7 @@ "title": "C-term part", "description": "Left Ser should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b.png", - "60%" - ], + "glyph_3b.png", "80%" ], "options": [ @@ -1000,10 +988,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "80%" ], "options": [ @@ -1103,10 +1088,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "80%" ], "options": [ @@ -1248,10 +1230,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "80%" ], "options": [ @@ -1414,10 +1393,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "80%" ], "options": [ @@ -1580,10 +1556,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "80%" ], "options": [ @@ -1662,10 +1635,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "80%" ], "options": [ @@ -1744,10 +1714,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "80%" ], "options": [ diff --git a/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_001.json b/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_001.json index 455706b..a358bcf 100644 --- a/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_001.json +++ b/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_001.json @@ -54,10 +54,7 @@ "title": "Left adapter", "description": "Gibson adapter to be joined via an A fusion site (GGAG)", "image": [ - [ - "left_adapter.png", - "60%" - ], + "left_adapter.png", "100%" ], "options": [ @@ -289,10 +286,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "promoter.png", - "60%" - ], + "promoter.png", "100%" ], "options": [ @@ -959,10 +953,7 @@ "title": "5' UTR", "description": null, "image": [ - [ - "5utr.png", - "60%" - ], + "5utr.png", "100%" ], "options": [ @@ -1377,10 +1368,7 @@ "title": "CDS", "description": null, "image": [ - [ - "cds.png", - "60%" - ], + "cds.png", "100%" ], "options": [ @@ -2845,10 +2833,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "100%" ], "options": [ @@ -3095,10 +3080,7 @@ "title": "Right adapter", "description": "Gibson adapter to be joined via an E fusion site (GCTT)", "image": [ - [ - "right_adapter.png", - "60%" - ], + "right_adapter.png", "100%" ], "options": [ diff --git a/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_002.json b/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_002.json index 84b83b8..4db3236 100644 --- a/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_002.json +++ b/processed/kits-murray-cidar-moclo-v1/templates/assembly_template_002.json @@ -42,10 +42,7 @@ "title": "Left adapter", "description": "Gibson adapter to be joined via an A fusion site (GGAG)", "image": [ - [ - "left_adapter.png", - "60%" - ], + "left_adapter.png", "100%" ], "options": [ @@ -374,10 +371,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "terminator.png", - "60%" - ], + "terminator.png", "100%" ], "options": [ @@ -603,10 +597,7 @@ "title": "Right adapter", "description": "Gibson adapter to be joined via an E fusion site (GCTT)", "image": [ - [ - "right_adapter.png", - "60%" - ], + "right_adapter.png", "100%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_001.json b/processed/kits-young-moclo-ysd/templates/assembly_template_001.json index f84641e..518228b 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_001.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_001.json @@ -66,10 +66,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -232,10 +229,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -734,10 +728,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "60%" ], "options": [ @@ -774,10 +765,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -919,10 +907,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1085,10 +1070,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1251,10 +1233,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [ @@ -1312,10 +1291,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_002.json b/processed/kits-young-moclo-ysd/templates/assembly_template_002.json index aacea5c..2f2e1bf 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_002.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_002.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -238,10 +235,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -740,10 +734,7 @@ "title": "N-term part", "description": "\u26a0\ufe0f Non-standard 3a (TGCT -Ala- instead of TTCT -Ser-). You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ala for fusion.", "image": [ - [ - "glyph_3a_prime.png", - "60%" - ], + "glyph_3a_prime.png", "60%" ], "options": [ @@ -1116,10 +1107,7 @@ "title": "C-term part", "description": "\u26a0\ufe0f Non-standard 3b (TGCT -Ala- instead of TTCT -Ser-). Left Ala should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b_prime.png", - "60%" - ], + "glyph_3b_prime.png", "60%" ], "options": [ @@ -1177,10 +1165,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1322,10 +1307,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1488,10 +1470,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1654,10 +1633,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [ @@ -1715,10 +1691,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_003.json b/processed/kits-young-moclo-ysd/templates/assembly_template_003.json index d8dc194..033c32e 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_003.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_003.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -244,10 +241,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -746,10 +740,7 @@ "title": "N-term part", "description": "\u26a0\ufe0f Non-standard 3a (TGCT -Ala- instead of TTCT -Ser-). You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ala for fusion.", "image": [ - [ - "glyph_3a_prime.png", - "60%" - ], + "glyph_3a_prime.png", "60%" ], "options": [ @@ -1122,10 +1113,7 @@ "title": "C-term part", "description": "\u26a0\ufe0f Non-standard 3b (TGCT -Ala- instead of TTCT -Ser-). Left Ala should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b_prime.png", - "60%" - ], + "glyph_3b_prime.png", "60%" ], "options": [ @@ -1183,10 +1171,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "60%" ], "options": [ @@ -1391,10 +1376,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1536,10 +1518,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1702,10 +1681,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1868,10 +1844,7 @@ "title": "Yeast plasmid origin of replication", "description": null, "image": [ - [ - "glyph_7.png", - "60%" - ], + "glyph_7.png", "60%" ], "options": [ @@ -1929,10 +1902,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8.png", - "60%" - ], + "glyph_8.png", "60%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_004.json b/processed/kits-young-moclo-ysd/templates/assembly_template_004.json index dbf24ec..90fb4f7 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_004.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_004.json @@ -72,10 +72,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -238,10 +235,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -740,10 +734,7 @@ "title": "Coding sequence", "description": "You can use the ATG from the fusion site as translation start. If possible omit STOP codon and make your protein in frame with the Ser.", "image": [ - [ - "glyph_3.png", - "60%" - ], + "glyph_3.png", "60%" ], "options": [ @@ -780,10 +771,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -925,10 +913,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1091,10 +1076,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1257,10 +1239,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1339,10 +1318,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -1421,10 +1397,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_005.json b/processed/kits-young-moclo-ysd/templates/assembly_template_005.json index 27fd242..1ca8f27 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_005.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_005.json @@ -78,10 +78,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -244,10 +241,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -746,10 +740,7 @@ "title": "N-term part", "description": "\u26a0\ufe0f Non-standard 3a (TGCT -Ala- instead of TTCT -Ser-). You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ala for fusion.", "image": [ - [ - "glyph_3a_prime.png", - "60%" - ], + "glyph_3a_prime.png", "60%" ], "options": [ @@ -1122,10 +1113,7 @@ "title": "C-term part", "description": "\u26a0\ufe0f Non-standard 3b (TGCT -Ala- instead of TTCT -Ser-). Left Ala should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b_prime.png", - "60%" - ], + "glyph_3b_prime.png", "60%" ], "options": [ @@ -1183,10 +1171,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1328,10 +1313,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1494,10 +1476,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1660,10 +1639,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1742,10 +1718,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -1824,10 +1797,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [ diff --git a/processed/kits-young-moclo-ysd/templates/assembly_template_006.json b/processed/kits-young-moclo-ysd/templates/assembly_template_006.json index f1920b3..0a0ccfe 100644 --- a/processed/kits-young-moclo-ysd/templates/assembly_template_006.json +++ b/processed/kits-young-moclo-ysd/templates/assembly_template_006.json @@ -84,10 +84,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_1.png", - "60%" - ], + "glyph_1.png", "60%" ], "options": [ @@ -250,10 +247,7 @@ "title": "Promoter", "description": null, "image": [ - [ - "glyph_2.png", - "60%" - ], + "glyph_2.png", "60%" ], "options": [ @@ -752,10 +746,7 @@ "title": "N-term part", "description": "\u26a0\ufe0f Non-standard 3a (TGCT -Ala- instead of TTCT -Ser-). You can use the ATG from the fusion site as translation start. Omit STOP codon and make your protein in frame with the Ala for fusion.", "image": [ - [ - "glyph_3a_prime.png", - "60%" - ], + "glyph_3a_prime.png", "60%" ], "options": [ @@ -1128,10 +1119,7 @@ "title": "C-term part", "description": "\u26a0\ufe0f Non-standard 3b (TGCT -Ala- instead of TTCT -Ser-). Left Ala should be in frame with previous CDS. If possible omit STOP codon and make your protein in frame with the right Ser for fusion.", "image": [ - [ - "glyph_3b_prime.png", - "60%" - ], + "glyph_3b_prime.png", "60%" ], "options": [ @@ -1189,10 +1177,7 @@ "title": "C-term (extra)", "description": "Left Ser should be in frame with previous CDS. Warning: You must include a STOP in your CDS!", "image": [ - [ - "glyph_4a.png", - "60%" - ], + "glyph_4a.png", "60%" ], "options": [ @@ -1397,10 +1382,7 @@ "title": "Terminator", "description": null, "image": [ - [ - "glyph_4.png", - "60%" - ], + "glyph_4.png", "60%" ], "options": [ @@ -1542,10 +1524,7 @@ "title": "Assembly connector", "description": null, "image": [ - [ - "glyph_5.png", - "60%" - ], + "glyph_5.png", "60%" ], "options": [ @@ -1708,10 +1687,7 @@ "title": "Yeast marker", "description": null, "image": [ - [ - "glyph_6.png", - "60%" - ], + "glyph_6.png", "60%" ], "options": [ @@ -1874,10 +1850,7 @@ "title": "Yeast 5' homology arm", "description": null, "image": [ - [ - "glyph_7h.png", - "60%" - ], + "glyph_7h.png", "60%" ], "options": [ @@ -1956,10 +1929,7 @@ "title": "Bacterial marker and origin", "description": null, "image": [ - [ - "glyph_8a.png", - "60%" - ], + "glyph_8a.png", "60%" ], "options": [ @@ -2038,10 +2008,7 @@ "title": "Yeast 3' homology arm", "description": null, "image": [ - [ - "glyph_8b.png", - "60%" - ], + "glyph_8b.png", "60%" ], "options": [