FieldML does not configure #101
Description
After doing a
cmake -DOPENCMISS_TOOLCHAIN=intel -DOPENCMISS_MPI=intel -DOPENCMISS_BUILD_TYPE=debug .
and a
make create_config
No FieldML files are created in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies (or in the mpi directory) i.e.,
cbra009@BN356540 /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies: ls
cellml hdf5 sowing suitesparse superlu szip zlib
and
cbra009@BN356540 /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies: ls
hypre mumps parmetis pastix petsc plapack scalapack scotch slepc sundials superlu_dist
The output was
cbra009@BN356540 /data/OpenCMISS/build/manage/Linux/release: cmake -DOPENCMISS_TOOLCHAIN=intel -DOPENCMISS_MPI=intel -DOPENCMISS_BUILD_TYPE=debug .
-- Read options from: /data/OpenCMISS/build/manage/Linux/release/InstallationOptions.cmake
-- Applying component Git settings at: /data/OpenCMISS/build/manage/Linux/release/Settings/OCComponentGitValues.cmake
-- Applying component configuration at: /data/OpenCMISS/build/manage/Linux/release/SharedSettings/OCComponentConfig.cmake
-- Applying component version settings from: OCComponentVersions
-- Applying component branch settings from: /data/OpenCMISS/build/manage/Linux/release/Settings/OCComponentBranches.cmake
-- Pre-selecting MPI: intel
-- Looking for an MPI ...
-- Looking for MPICH_VERSION
-- Looking for MPICH_VERSION - found
-- Looking for I_MPI_VERSION
-- Looking for I_MPI_VERSION - found
-- Looking for OMPI_MAJOR_VERSION
-- Looking for OMPI_MAJOR_VERSION - not found
-- Looking for an MPI ... found intel
-- Looking for an MPI ...
-- Looking for MPICH_VERSION
-- Looking for MPICH_VERSION - found
-- Looking for I_MPI_VERSION
-- Looking for I_MPI_VERSION - found
-- Looking for OMPI_MAJOR_VERSION
-- Looking for OMPI_MAJOR_VERSION - not found
-- Looking for an MPI ... found intel
-- Looking for MPICH_VERSION
-- Looking for MPICH_VERSION - found
-- Looking for I_MPI_VERSION
-- Looking for I_MPI_VERSION - found
-- Looking for OMPI_MAJOR_VERSION
-- Looking for OMPI_MAJOR_VERSION - not found
-- FindLibXml2 wrapper: System search enabled
-- FindLibXml2 wrapper: Trying to find version 2.7.6 on system in MODULE mode
-- FindLibXml2 wrapper: Found: /usr/lib/x86_64-linux-gnu/libxml2.so
-- FindLAPACK wrapper: System search enabled
-- FindLAPACK wrapper: Trying to find version 3.5.0 on system in MODULE mode
-- A library with BLAS API found.
-- FindLAPACK wrapper: Found: /usr/lib64/liblapack.so;/usr/lib64/libblas.so
-- FindBLAS wrapper: System search enabled
-- FindBLAS wrapper: Trying to find version on system in MODULE mode
-- FindBLAS wrapper: Found: /usr/lib64/libblas.so
-- FindJPEG wrapper: System search enabled
-- FindJPEG wrapper: Trying to find version 6.0.0 on system in MODULE mode
-- FindJPEG wrapper: Found: /usr/lib64/libjpeg.so
-- @
-- @@@@@@@@@@@@@@@@@@@@@ SUMMARY @@@@@@@@@@@@@@@@@@@@@@@
-- @
-- @ OPENCMISS_TOOLCHAIN: intel
-- @ OPENCMISS_MPI_IMPLEMENTATION: intel
-- @ ACTIVE_ARCHITECTURE_MPI_PATH: /x86_64_linux/intel-C18.0-intel-F18.0/intel_system
-- @
-- @ CONFIG PATH: /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug
-- @ CONFIGURATION SETTINGS: -DOC_USE_IRON=ON -DOC_USE_ZINC=ON -DOPENCMISS_BUILD_TYPE=debug -DOPENCMISS_MPI_IMPLEMENTATION=intel -DMPIEXEC_EXECUTABLE=/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/bin/mpiexec -DMPI_C_COMPILER=/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/bin/mpiicc -DMPI_CXX_COMPILER=/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/bin/mpiicpc -DMPI_Fortran_COMPILER=/opt/intel/compilers_and_libraries_2018.1.163/linux/mpi/intel64/bin/mpiifort -DOPENCMISS_LIBRARIES_ONLY=NO -DOPENCMISS_DEPENDENCIES_ONLY=FALSE -DOPENCMISS_TOOLCHAIN=intel -DOPENCMISS_BUILD_OWN_MPI=NO -DOPENCMISS_INSTRUMENTATION=none -DOPENCMISS_OWN_MPI_INSTALL_BASE=/data/OpenCMISS/install -DOPENCMISS_ROOTS_FILE=/data/OpenCMISS/build/manage/Linux/release/ConfiguredFiles/OpenCMISSRoots.cmake -DOPENCMISS_CMAKE_MODULE_PATH=/data/OpenCMISS/install/share/cmake/Modules -DOPENCMISS_SUPPORT_DIR=/data/OpenCMISS/build/manage/Linux/release/support -DOPENCMISS_USE_ARCHITECTURE_PATH=TRUE -DARCH_MPI_PATH=/x86_64_linux/intel-C18.0-intel-F18.0/intel_system -DARCH_NO_MPI_PATH=/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi -DSHARED_MODULES_PATH=/data/OpenCMISS/src/manage/SharedModules -DSHARED_SETTINGS_PATH=/data/OpenCMISS/build/manage/Linux/release/SharedSettings
-- @
-- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
-- @
-- @
-- @@@@@@@@@@@@@@@@@@@ NEXT STEPS @@@@@@@@@@@@@@@@@@@@@@
-- @
-- @ - Change /data/OpenCMISS/build/manage/Linux/release/OpenCMISSInstallationConfig.cmake according to your needs
-- @
-- @ Having trouble? Follow the galaxy hitchhiker's advice:
-- @ DONT PANIC ... and:
-- @ - Refer to http://staging.opencmiss.org/documentation/cmake/docs/config/index.html for customization instructions
-- @
-- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
-- @
-- Configuring done
-- Generating done
-- Build files have been written to: /data/OpenCMISS/build/manage/Linux/release
cbra009@BN356540 /data/OpenCMISS/build/manage/Linux/release: make create_config
[ 4%] Checking FTGL sources are present
[ 4%] Built target SM_ftgl_sources
[ 8%] Checking PNG sources are present
[ 8%] Built target SM_png_sources
[ 12%] Checking OPTPP sources are present
[ 12%] Built target SM_optpp_sources
[ 16%] Checking NETGEN sources are present
[ 16%] Built target SM_netgen_sources
[ 16%] Checking ITK sources are present
[ 16%] Built target SM_itk_sources
[ 20%] Checking IMAGEMAGICK sources are present
[ 20%] Built target SM_imagemagick_sources
[ 24%] Checking GLEW sources are present
[ 24%] Built target SM_glew_sources
[ 28%] Checking HDF5 sources are present
[ 28%] Built target SM_hdf5_sources
[ 32%] Checking PASTIX sources are present
[ 32%] Built target SM_pastix_sources
[ 36%] Checking PARMETIS sources are present
[ 36%] Built target SM_parmetis_sources
[ 36%] Checking MUMPS sources are present
[ 36%] Built target SM_mumps_sources
[ 40%] Checking SCALAPACK sources are present
[ 40%] Built target SM_scalapack_sources
[ 40%] Checking SZIP sources are present
[ 40%] Built target SM_szip_sources
[ 40%] Checking LLVM sources are present
[ 40%] Built target SM_llvm_sources
[ 44%] Checking SLEPC sources are present
[ 44%] Built target SM_slepc_sources
[ 48%] Checking ZINC sources are present
[ 48%] Built target SM_zinc_sources
[ 52%] Checking CELLML sources are present
[ 52%] Built target SM_cellml_sources
[ 52%] Checking IRON sources are present
[ 52%] Built target SM_iron_sources
[ 56%] Checking ZLIB sources are present
[ 56%] Built target SM_zlib_sources
[ 60%] Checking HYPRE sources are present
[ 60%] Built target SM_hypre_sources
[ 64%] Checking SUNDIALS sources are present
[ 64%] Built target SM_sundials_sources
[ 68%] Checking CSIM sources are present
[ 68%] Built target SM_csim_sources
[ 72%] Checking FREETYPE sources are present
[ 72%] Built target SM_freetype_sources
[ 76%] Checking PETSC sources are present
[ 76%] Built target SM_petsc_sources
[ 80%] Checking PLAPACK sources are present
[ 80%] Built target SM_plapack_sources
[ 80%] Checking TIFF sources are present
[ 80%] Built target SM_tiff_sources
[ 84%] Checking GDCM-ABI sources are present
[ 84%] Built target SM_gdcm-abi_sources
[ 88%] Checking SCOTCH sources are present
[ 88%] Built target SM_scotch_sources
[ 92%] Checking SOWING sources are present
[ 92%] Built target SM_sowing_sources
[ 96%] Checking SUITESPARSE sources are present
[ 96%] Built target SM_suitesparse_sources
[ 96%] Checking SUPERLU_DIST sources are present
[ 96%] Built target SM_superlu_dist_sources
[ 96%] Checking SUPERLU sources are present
[ 96%] Built target SM_superlu_sources
[ 96%] Built target get_sources
[ 96%] Creating config.
-- Attempting to use intel compilers.
-- Language bindings are possible.
-- Python language bindings are possible.
-- Applying OpenCMISS local configuration at /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/OpenCMISSLocalConfig.cmake...
-- FindLibXml2 wrapper: System search enabled
-- FindLibXml2 wrapper: Trying to find version 2.7.6 on system in MODULE mode
-- FindLibXml2 wrapper: Found: /usr/lib/x86_64-linux-gnu/libxml2.so
-- FindLAPACK wrapper: System search enabled
-- FindLAPACK wrapper: Trying to find version 3.5.0 on system in MODULE mode
-- A library with BLAS API found.
-- FindLAPACK wrapper: Found: /opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_intel_lp64.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_intel_thread.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_core.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64_lin/libiomp5.so;-lpthread;-lm
-- FindBLAS wrapper: System search enabled
-- FindBLAS wrapper: Trying to find version on system in MODULE mode
-- FindBLAS wrapper: Found: /opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_intel_lp64.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_intel_thread.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/mkl/lib/intel64_lin/libmkl_core.so;/opt/intel/compilers_and_libraries_2018.1.163/linux/compiler/lib/intel64_lin/libiomp5.so
-- Starting configuration in /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug at 2017-12-03_16-46
-- Detected Fortran mangling: Suffix '_', Case 'LOWER'
-- Looking for an MPI ...
-- Looking for MPICH_VERSION
-- Looking for MPICH_VERSION - found
-- Looking for I_MPI_VERSION
-- Looking for I_MPI_VERSION - found
-- Looking for OMPI_MAJOR_VERSION
-- Looking for OMPI_MAJOR_VERSION - not found
-- Looking for an MPI ... found intel
-- OpenCMISS component BZIP2 : Use ON , System search ON , Shared: OFF, Branch 'develop')
-- OpenCMISS component FIELDML-API : Use REQ, System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component GTEST : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component HDF5 : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component LIBXML2 : Use REQ, System search ON , Shared: OFF, Branch 'develop')
-- OpenCMISS component SZIP : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component ZLIB : Use REQ, System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component CELLML : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component CLANG : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component HYPRE : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component IRON : Use ON , System search OFF, Shared: ON , Branch 'FSI_Chris')
-- OpenCMISS component LAPACK : Use ON , System search ON , Shared: OFF, Branch 'develop')
-- OpenCMISS component LIBCELLML : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component LLVM : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component MUMPS : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component PARMETIS : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component PASTIX : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component PETSC : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component PLAPACK : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SCALAPACK : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SCOTCH : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SLEPC : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SOWING : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SUITESPARSE : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SUNDIALS : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SUPERLU : Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- OpenCMISS component SUPERLU_DIST: Use ON , System search OFF, Shared: OFF, Branch 'develop')
-- C flags (RELEASE)=-O3 -DNDEBUG
-- C flags (DEBUG)=-g -traceback -Wall -Wcheck -fp-trap=common -ftrapuv
-- CXX flags (RELEASE)=-O3 -DNDEBUG
-- CXX flags (DEBUG)=-g -traceback -Wall -Wcheck -fp-trap=common -ftrapuv
-- Fortran flags (RELEASE)=-O3
-- Fortran flags (DEBUG)=-g -traceback -fpe-all=0 -ftrapuv
-- Configuring build of 'ZLIB 1.2.3' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/zlib/debug...
-- Configuring build of 'SZIP 2.1' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/szip/debug...
-- Configuring build of 'HDF5 1.8.14' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/hdf5/debug...
-- Configuring build of 'SCOTCH 6.0.3' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/scotch/debug...
-- Configuring build of 'PLAPACK 3.0' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/plapack/debug...
-- Configuring build of 'SCALAPACK 2.8' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/scalapack/debug...
-- Configuring build of 'PARMETIS 4.0.3' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/parmetis/debug...
-- Configuring build of 'MUMPS 5.0.0' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/mumps/debug...
-- Configuring build of 'SUITESPARSE 4.4.0' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/suitesparse/debug...
-- Configuring build of 'SUPERLU 4.3' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/superlu/debug...
-- Configuring build of 'HYPRE 2.10.0' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/hypre/debug...
-- Configuring build of 'SUPERLU_DIST 4.1' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/superlu_dist/debug...
-- Configuring build of 'SUNDIALS 2.5' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/sundials/debug...
-- PASTIX_WITH_PARMETIS: , OC_USE_PARMETIS: ON
-- Configuring build of 'PASTIX 5.2.2.16' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/pastix/debug...
-- Configuring build of 'SOWING 1.1.16' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/sowing/debug...
-- Configuring build of 'PETSC 3.6.1' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/petsc/debug...
-- Configuring build of 'SLEPC 3.6.1' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/dependencies/slepc/debug...
-- Configuring build of 'CELLML 1.1' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/no_mpi/dependencies/cellml/debug...
-- Configuring build of 'IRON 0.6.0' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/iron/debug...
-- Configuring build of 'classicalfield_laplace_simple 1.3' in /data/OpenCMISS/build/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/examples/classicalfield_laplace_simple/debug...
-- Exporting OpenCMISS build context: /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug/export/context.cmake
-- Exporting OpenCMISS build context: /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug/export/context-dependencies.cmake
-- Exporting OpenCMISS build context: /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug/export/context-mpi-intel.cmake
-- @
-- @@@@@@@@@@@@@@@@@@@@@@ SUMMARY @@@@@@@@@@@@@@@@@@@@@@
-- @
-- @ MPI implementation:
-- @ TOOLCHAIN: intel
-- @
-- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
-- @
-- @
-- @@@@@@@@@@@@@@@@@@@ NEXT STEPS @@@@@@@@@@@@@@@@@@@@@@
-- @
-- @ - Change /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/OpenCMISSLocalConfig.cmake according to your setup/needs
-- @ - Build the 'opencmiss' target (e.g. '/usr/bin/make opencmiss') to start the build process
-- @
-- @ Having trouble? Follow the galaxy hitchhiker's advice:
-- @ DONT PANIC ... and:
-- @ - Refer to http://staging.opencmiss.org/documentation/cmake/docs/config/index.html for customization instructions
-- @ - Build the 'support' target to get help! (e.g. '/usr/bin/make support')
-- @
-- @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
-- @
-- Finished configuration in /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug
-- Configuring done
-- Generating done
-- Build files have been written to: /data/OpenCMISS/build/manage/Linux/release/configs/x86_64_linux/intel-C18.0-intel-F18.0/intel_system/debug
[100%] Built target create_config