diff --git a/.github/workflows/nested_eagle.yml b/.github/workflows/nested_eagle.yml
index 6421ca1..0188825 100644
--- a/.github/workflows/nested_eagle.yml
+++ b/.github/workflows/nested_eagle.yml
@@ -1,12 +1,12 @@
-# This is a basic workflow that is manually triggered
 
-name: Nested Eagle Pipeline
+name: Nested Eagle CI Pipeline
 
 # Controls when the action will run. Workflow runs when manually triggered using the UI
 # or API.
 on:
-  workflow_dispatch:
-# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+  pull_request:
+    branches:
+      - main
 jobs:
   # This workflow contains a job called submit_grids.
   Submit_Grids:
@@ -16,10 +16,10 @@ jobs:
 
     # Steps represent a sequence of tasks that will be executed as part of the job
     steps:
-     - name: Checkout a specific branch
+     - name: Checkout pull request branch
        uses: actions/checkout@v4 
        with:
-        ref: main
+        ref: ${{ github.event.pull_request.head.ref }} 
      - name: Submit Initial Grids
        run: |
          cd nested_eagle/scientific_workflow/data
@@ -126,10 +126,3 @@ jobs:
             done
 
              echo "Slurm job $JOB_ID to perform validation has been completed."
-        
-
-         
-         
-
-    
-          
diff --git a/.github/workflows/nested_eagle_manual.yml b/.github/workflows/nested_eagle_manual.yml
new file mode 100644
index 0000000..6421ca1
--- /dev/null
+++ b/.github/workflows/nested_eagle_manual.yml
@@ -0,0 +1,135 @@
+# This is a basic workflow that is manually triggered
+
+name: Nested Eagle Pipeline
+
+# Controls when the action will run. Workflow runs when manually triggered using the UI
+# or API.
+on:
+  workflow_dispatch:
+# A workflow run is made up of one or more jobs that can run sequentially or in parallel
+jobs:
+  # This workflow contains a job called submit_grids.
+  Submit_Grids:
+    # The type of runner that the job will run on
+    runs-on: ursa
+    timeout-minutes: 1440
+
+    # Steps represent a sequence of tasks that will be executed as part of the job
+    steps:
+     - name: Checkout a specific branch
+       uses: actions/checkout@v4 
+       with:
+        ref: main
+     - name: Submit Initial Grids
+       run: |
+         cd nested_eagle/scientific_workflow/data
+         
+        
+
+         JOB_ID=$(sbatch submit_grids.sh | awk '{print $4}')
+            echo "Submitted Slurm job with ID: $JOB_ID"
+            
+            while squeue -j $JOB_ID &>/dev/null; do
+              echo "Slurm job $JOB_ID is still running or pending. Waiting..."
+              sleep 30 # Wait for 30 seconds before checking again
+            done
+
+            echo "Slurm job $JOB_ID to generate the grids has completed."
+     
+  Generate_Forecasts:
+    # The type of runner that the job will run on
+    runs-on: ursa
+    timeout-minutes: 1440
+    needs: Submit_Grids
+    steps:
+      - name: Generate GFS & HRRR Forecasts
+        run: |
+         cd nested_eagle/scientific_workflow/data
+         echo "Slurm jobs to generate the GFS & HRRR forecasts have completed."
+         
+         JOB_ID1=$(sbatch submit_gfs.sh | awk '{print $4}')
+         JOB_ID2=$(sbatch submit_hrrr.sh | awk '{print $4}')
+         
+            echo "Submitted Slurm job with ID: $JOB_ID1"
+            echo "Submitted Slurm job with ID: $JOB_ID2"
+            while squeue -h -j ${JOB_ID1},${JOB_ID2} | grep -q "${JOB_ID1}\|${JOB_ID2}"; do
+               squeue -u $USER
+               sleep 30  # Wait for 30 seconds before checking again.
+            done
+            
+            echo "Slurm jobs $JOB_ID1 and $JOB_ID2 to generate the GFS & HRRR forecasts have completed."
+  Run_Training:
+    # The type of runner that the job will run on
+    runs-on: ursa
+    timeout-minutes: 1440
+    needs: Generate_Forecasts
+    steps:
+      - name: Run Training Against the Generated Forecasts
+        run: |
+         cd nested_eagle/scientific_workflow/training
+         
+
+         JOB_ID=$(sbatch submit_training.sh | awk '{print $4}')
+         CHECKPOINT="$PWD/outputs/checkpoint"
+
+         echo "Submitted Slurm job with ID: $JOB_ID"
+          while [ ! -d "$CHECKPOINT" ]; do
+            echo "Directory '$CHECKPOINT' doesn't exist yet."
+            squeue -u $USER
+            sleep 30  # Wait for 30 seconds before checking again.
+          done
+            scancel $JOB_ID
+            
+          echo "Slurm job to train the data has been completed."  
+             
+
+  Run_Inference:
+  # The type of runner that the job will run on
+    runs-on: ursa
+    timeout-minutes: 1440
+    needs: Run_Training
+    steps:
+      - name: Run Inference against the training data
+        run: |
+          cd nested_eagle/scientific_workflow/inference
+
+          JOB_ID=$(sbatch submit_inference.sh | awk '{print $4}')
+        
+         
+            echo "Submitted Inference Slurm job with ID: $JOB_ID"
+           
+            while squeue -h -j ${JOB_ID} | grep -q "${JOB_ID}"; do
+               squeue -u $USER
+               sleep 30  # Wait for 30 seconds before checking again.
+            done
+
+             echo "Slurm job $JOB_ID to run inference on the data has been completed."
+
+  Perform_Validation:
+  # The type of runner that the job will run on
+    runs-on: ursa
+    timeout-minutes: 1440
+    needs: Run_Inference
+    steps:
+      - name: Perform validation against the results
+        run: |
+          cd nested_eagle/scientific_workflow/validation
+
+          JOB_ID=$(sbatch submit_validation.sh | awk '{print $4}')
+        
+         
+            echo "Submitted Validation Slurm job with ID: $JOB_ID"
+           
+            while squeue -h -j ${JOB_ID} | grep -q "${JOB_ID}"; do
+               squeue -u $USER
+               sleep 30  # Wait for 30 seconds before checking again.
+            done
+
+             echo "Slurm job $JOB_ID to perform validation has been completed."
+        
+
+         
+         
+
+    
+