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(2024). + Timing of partial melting and granulite formation during the genesis of high to + ultra‐high temperature terranes: Insight from numerical experiments [Data set]. + AuScope, National Computational Infrastructure. https://doi.org/aaen-nc33' +software: + name: 'Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud' + doi: https://doi.org/10.5281/zenodo.3975252 + url_source: '' +licence: + licence_url: https://creativecommons.org/licenses/by/4.0/legalcode + licence_image: ../../../img/licence/by.png + description: Creative Commons Attribution 4.0 International + licence_file: license.txt +submitter: + name: Thyagarajulu + family_name: Gollapalli + ORCID: https://orcid.org/0000-0001-9394-4104 +creators: + - name: Thyagarajulu + family_name: Gollapalli + ORCID: 0000-0001-9394-4104 +associated_publication: + title: Unravelling tectonic coupling and loading along the Sunda margin through + 3-D regional numerical modelling + doi: https://doi.org/10.26180/21664034.v1 + date: 2022-12 + authors: + - name: Thyagarajulu + family_name: Gollapalli +compute_info: + name: Gadi Supercomputer + organisation: National Computational Infrastructure + url: https://pid.nci.org.au/doi/f5966_0057_9267_4579 + doi: https://doi.org/10.25914/608bfd1838db2 +research_tags: + - Subduction + - Plate boundary +compute_tags: + - Python + - Finite element + - Particle-in-cell +funder: + name: National Computational Infrastructure + doi: https://ror.org/04yx6dh41 +abstract: The negative buoyancy of the slab primarily controls the subducting plate + and trench motions, and tectonic stresses around the convergent margins. Lateral + variations in negative buoyancy associated with varying slab depth along strike + must affect plate and margin motions, and, most importantly, have an impact on the + stress acting across the margin, thereby setting the context for plate coupling, + tectonics and present-day seismicity. Here, we investigated these interactions in + 3-D subduction numerical models, focusing on along-trench variations in the subduction + depth and the resulting perturbations to the force balance. While we focus on the + steps in the slab depth, we additionally test the role of subducting plate, i.e., + cohesion and viscosity, and upper plate properties, i.e., thickness, viscosity, + and cohesion. The results show that the magnitude of convergence velocity only depends + on the integrated slab mass and rheology of the subducting plate when the upper + plate is thin. Instead, the trench retreat/advance is sensitive to the heterogeneity + in the slab depth, and a complex pattern arises atop the slab step, with a characteristic + length of ~500 km from the slab depth perturbation. The remaining parameters of + the subducting and upper plate mainly affect the magnitude of the trench velocities + with minor influence on the pattern. The highest deformation/stress in the upper + plate is observed around the slab step due to the rigidity of the plate, causing + mutual perturbation between the deep and shallow slab portions, and the lateral + flow around the step. These results are compared with the observations along the + Sunda margin, where similar slab depth variations are found. The upper plate deformation + in the model shows remarkable compatibility with the observed distributions of compression + and extension of the Andaman- Sumatra-Java segments. Our study indicates that trench-parallel + forces, arising from the natural variations of slab depth, exert a first-order control + on the plate coupling and deformation along convergent margins and should not be + neglected. +description: The negative buoyancy of the slab drives subducting plate and trench + motions, influencing tectonic stresses at convergent margins. Variations in slab + depth along the trench affect plate coupling and seismicity. We investigated these + effects using 3-D subduction models, focusing on slab depth variations and their + impact on force balance. Results show convergence velocity is primarily controlled + by slab mass and subducting plate rheology, while trench movement is sensitive to + slab depth heterogeneity. The highest stress occurs around slab steps, aligning + with deformation patterns observed along the Sunda margin. This study highlights + the crucial role of trench-parallel forces in plate dynamics. +images: + landing_image: + src: ./graphics/vel_sr_inv_landing_page.png + caption: "\nMantle flow and upper plate deformation due to slab step" + graphic_abstract: + src: ./graphics/sketch.png + caption: "\nSketch of the tectonic forces acting at the Sunda margin and interface + stress along Andaman (DD’), Sumatra (FF’), and Java (MM’). At the Sumatra margin, + an additional transferred force ($F^*_{SP}$) from Java is acting that contributes + to crustal thickening/compression in the upper plate. The blue stars represent + the interplate earthquakes, and black dots are intraplate seismicity. The sketch + neglects the curvature of the trench and the obliquity of convergence." + model_setup: + src: ./graphics/model_matvar_edit_model_setup.png + caption: "\nNumerical model setup. The parameter `d` denotes the depth of the + long slab (i.e., 660 km, green plane), and `Δ𝑑` represents step length (i.e., + the difference between the long and short slab). The long and short slabs extend + from 0-2000 and 2000-4000 km in the Y-direction. The trench is located at X + = 2000 km." +animation: + src: ./graphics/ + caption: '' +model_setup_info: + url: '' + summary: The model setup consists of the subducting plate with attached slab and + upper plate inserted in the 660 km upper mantle lying over 340 km lower mantle. + The model extends 4000 km in each x, y, and 1000 km in the z-axis with a numerical + resolution of 512×512×128, respectively. This resolution results in an element + size of 7.8 km in all three directions. Each element is populated with 20 Lagrangian + particles to store material properties. All boundaries in the model are under + free slip conditions. All models include a 100 km thick subducting plate and slab. + The rheology in the top 30 km (crust) is viscoplastic, and the rest (70 km lithospheric + mantle) is viscous. Oceanic lithosphere has a density contrast of 50 $kg/m^3$ + with respect to the underlying sublithospheric mantle. The entire slab has a uniform + initial dip angle of 45°. The upper plate consists of crust 30 km thick, and its + lithospheric mantle thickness is varied between 20 km, 40 km, and 60 km. The trailing + end of the subducting plate is free and upper plate end is fixed. The density + contrast between the upper plate and mantle is set to zero. This avoids lithostatic + pressure gradients, and the stress distribution in the upper plate is only influenced + by the dynamics driven by lateral slab buoyancy variations. Therefore, the stress + distribution in the upper plate can be used as a proxy for tectonic coupling at + the interface. +model_files: + url: '' + notes: Underworld2 input files of Sunda Subduction Zone (3D cartesian models). + file_tree: '' + existing_identifier: https://doi.org/10.5281/zenodo.7022845 + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/gollapalli-2022-sunda-subduction/catalog.html + include: true +dataset: + url: '' + notes: Output data mainly contains *.h5 and *.xdmf files. + existing_identifier: '' + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/gollapalli-2022-sunda-subduction/catalog.html + include: true +metadataFile: ro-crate-metadata.json +--- diff --git a/src/pages/models/cenki-2022-uht-granulitic-terranes/license.txt b/src/pages/models/cenki-2022-uht-granulitic-terranes/license.txt new file mode 100644 index 0000000..da6ab6c --- /dev/null +++ b/src/pages/models/cenki-2022-uht-granulitic-terranes/license.txt @@ -0,0 +1,396 @@ +Attribution 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. 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For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/src/pages/models/cenki-2022-uht-granulitic-terranes/ro-crate-metadata.json b/src/pages/models/cenki-2022-uht-granulitic-terranes/ro-crate-metadata.json new file mode 100644 index 0000000..27c9ee4 --- /dev/null +++ b/src/pages/models/cenki-2022-uht-granulitic-terranes/ro-crate-metadata.json @@ -0,0 +1,399 @@ +{ + "@context": [ + "https://www.researchobject.org/ro-crate/1.1/context.jsonld", + "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld" + ], + "@graph": [ + { + "@id": "#datasetCreation", + "@type": "CreateAction", + "agent": [ + { + "@id": "https://orcid.org/0000-0001-7649-4498" + }, + { + "@id": "https://orcid.org/0000-0002-1767-8593" + }, + { + "@id": "https://orcid.org/0000-0001-6773-0807" + }, + { + "@id": "https://orcid.org/0000-0003-4515-9296" + } + ], + "description": "Running the computational model", + "endTime": "", + "instrument": { + "@id": "https://doi.org/10.5281/zenodo.3975252" + }, + "object": { + "@id": "model_code_inputs" + }, + "result": { + "@id": "model_output_data" + }, + "startTime": "" + }, + { + "@id": "./", + "@type": "Dataset", + "about": { + "@id": "https://linked.data.gov.au/def/anzsrc-for/2020/370401" + }, + "abstract": "Long\u2010lived high to ultra\u2010high temperature (HT\u2010UHT) granulitic terranes formed throughout Earth's history. Yet, the detailed processes involved in their formation remain unresolved and notably the sequence of appearance and duration of migmatisation and granulites conditions in the orogenic cycle. These processes can be evaluated by analytical and numerical models. First, solving the steady\u2010state heat equation allows underlining the interdependency of the parameters controlling the crustal geotherm at thermal equilibrium. Second, performing two\u2010dimensional thermo\u2010mechanical experiments of an orogenic cycle, from shortening to gravitational collapse, allows to consider non\u2010steady\u2010state geotherms and understand how deformation velocity may affect the relative timing of migmatite and granulite formation. These numerical experiments with elevated radiogenic heat production and slow shortening rates allow the formation of large volumes of prograde migmatites and granulites going through the sillimanite field as observed in many HT\u2010UHT terranes. Finally, the interplay between these parameters can explain the difference in predicted pressure\u2010temperature\u2010time paths that can be compared with the natural rock archive.", + "alternateName": "cenki-2022-uht-granulitic-terranes", + "citation": { + "@id": "http://dx.doi.org/10.1111/ter.12577" + }, + "contributor": "", + "creativeWorkStatus": "completed", + "creator": [ + { + "@id": "https://orcid.org/0000-0001-7649-4498" + }, + { + "@id": "https://orcid.org/0000-0002-1767-8593" + }, + { + "@id": "https://orcid.org/0000-0001-6773-0807" + }, + { + "@id": "https://orcid.org/0000-0003-4515-9296" + } + ], + "datePublished": "2024-10-25T06:41:30.000Z", + "description": "Long-lived high to ultra-high temperature (HT-UHT) granulitic terranes formed throughout Earth's history. Yet, the detailed processes involved in their formation remain unresolved and notably the sequence of appearance and duration of migmatisation and granulites conditions in the orogenic cycle. 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b/src/pages/models/finch-2024-cprime/assets/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/src/pages/models/finch-2024-cprime/assets/.gitkeep @@ -0,0 +1 @@ + diff --git a/src/pages/models/finch-2024-cprime/graphics/.gitkeep b/src/pages/models/finch-2024-cprime/graphics/.gitkeep new file mode 100644 index 0000000..d3f5a12 --- /dev/null +++ b/src/pages/models/finch-2024-cprime/graphics/.gitkeep @@ -0,0 +1 @@ + diff --git a/src/pages/models/finch-2024-cprime/graphics/Fig 3.png b/src/pages/models/finch-2024-cprime/graphics/Fig 3.png new file mode 100644 index 0000000..1bfb6f4 Binary files /dev/null and b/src/pages/models/finch-2024-cprime/graphics/Fig 3.png differ diff --git a/src/pages/models/finch-2024-cprime/graphics/Fig 5.png b/src/pages/models/finch-2024-cprime/graphics/Fig 5.png new file mode 100644 index 0000000..bb49ebd Binary files /dev/null and b/src/pages/models/finch-2024-cprime/graphics/Fig 5.png differ diff --git a/src/pages/models/finch-2024-cprime/graphics/Fig 2.png b/src/pages/models/finch-2024-cprime/graphics/Fig 2.png new file mode 100644 index 0000000..3588844 Binary files /dev/null and b/src/pages/models/finch-2024-cprime/graphics/Fig 2.png differ diff --git a/src/pages/models/finch-2024-cprime/index.md b/src/pages/models/finch-2024-cprime/index.md new file mode 100644 index 0000000..f241f8c --- /dev/null +++ b/src/pages/models/finch-2024-cprime/index.md @@ -0,0 +1,173 @@ +--- +templateKey: model +slug: finch-2024-cprime +title: 'The ephemeral development of C′ shear bands: A numerical modelling approach' +date: '2024-10-29T02:36:04.000Z' +featuredpost: +for_codes: + - 370401 +status: + - completed +doi: https://doi.org/10.25914/whbg-hd74 +url: https://mate.science//models/finch-2024-cprime +creditText: 'Finch, M., Bons, P.D.., Steinbach, F., Griera Artigas, A., Llorens, M., + Gomez-Rivas, E.., Ran, H.., & de Riese, T.. (2024). The ephemeral development of + C′ shear bands: A numerical modelling approach [Data set]. AuScope, National Computational + Infrastructure. https://doi.org/whbg-hd74' +software: + name: Elle Numerical Simulation Platform + doi: https://elle.ws/ + url_source: https://sourceforge.net/p/elle/git/ci/master/tree/ +licence: + licence_url: https://creativecommons.org/licenses/by/4.0/legalcode + licence_image: ../../../img/licence/by.png + description: Creative Commons Attribution 4.0 International + licence_file: license.txt +submitter: + name: Melanie + family_name: Finch + ORCID: https://orcid.org/0000-0001-9699-2769 +creators: + - name: Melanie + family_name: Finch + ORCID: 0000-0001-9699-2769 + - name: Paul D. + family_name: Bons + ORCID: 0000-0002-6469-3526 + - name: Florian + family_name: Steinbach + ORCID: Invalid ORCiD ID + - name: Albert + family_name: Griera Artigas + ORCID: 0000-0003-4598-8385 + - name: Maria-Gema + family_name: Llorens + ORCID: 0000-0002-6148-2600 + - name: Enrique + family_name: Gomez-Rivas + ORCID: 0000-0002-1317-6289 + - name: Hao + family_name: Ran + ORCID: 0000-0002-8639-3890 + - name: Tamara + family_name: de Riese + ORCID: 0000-0001-5828-8711 +associated_publication: + title: 'The ephemeral development of C′ shear bands: A numerical modelling approach' + url: http://dx.doi.org/10.1016/j.jsg.2020.104091 + doi: 10.1016/j.jsg.2020.104091 +compute_info: + name: '' + organisation: '' + url: '' + doi: '' +research_tags: [] +compute_tags: + - VPFFT + - Elle +funder: + - name: Alexander von Humboldt Foundation + doi: https://ror.org/012kf4317 + - name: Ministerio de Ciencia, Innovación y Universidades + doi: https://ror.org/05r0vyz12 +funding: + - name: Ministerio de Ciencia, Innovación y Universidades + doi: https://ror.org/05r0vyz12 + number_id: RYC2018-026335-I +abstract: '' +description: "This model simulates the development of C' shear bands in ductile shear + zones. The model begins with an equigranular texture of three phases: a strong phase + (e.g., feldspar) an intermediate-strength phase (e.g., quartz) and an anisotropic + weak phase (e.g., mica). Dextral shearing stretches and rotates the microstructure, + forming S-C fabric, asymmetric folds and C' shear bands." +images: + landing_image: + src: ./graphics/Fig 3.png + caption: 'Stages of microstructural development in a model with 15% weak phase + (black) and a medium phase strength contrast. (a) Starting microstructure, (b) + stage 1: grain elongation and rotation. Note the distribution of maximum strain + rate (red arrows) localised to tips of WP grains that are parallel to the C + plane, (c) stage 2: S-C fabric development. Stress is highest in the IP+SP adjacent + to high strain rate layers of interconnected WP (red and orange arrows). (d) + stage 3: shear band development and strain partitioning. Maximum stress in the + model is in the gap in the shear band (red arrow). Green arrows highlight areas + that have been asymmetrically folded (c.f. Fig. 1a). The first column shows + the grain microstructure, the second column shows the normalised von Mises strain + rate and the third column shows the von Mises stress. Images in the same row + correspond to the same model and step.' + graphic_abstract: + src: ./graphics/Fig 5.png + caption: The formation of C' shear bands by the rotation of a C plane forwards + due to high strain rate in the shear band and high stress at the tip of the + shear band. (a) Discontinuous shear band with section parallel to the SZB at + high strain rate (red arrow) and high stress in the IP+SP region at the end + of the shear band (orange arrow). (b) A low strain rate section in the shear + band is bracketed on either side by high strain rate sections (red arrows) and + begins to rotate forwards. (c) C' shear band forms in low strain rate section + (red dashed line). (d) Strain rate reduces in the shear band and the C' shear + band has rotated back into parallelism with the SZB and C planes. The first + column shows the grain microstructure, the second column shows the normalised + von Mises strain rate and the third column shows the von Mises stress. Model + shown contains 15% weak phase and a high phase strength contrast. Images in + the same row correspond to the same model and step. + model_setup: + src: ./graphics/Fig 2.png + caption: 'Basic process of microstructure simulation. (a) The starting microstructure + consists of three grain types that undergo one increment of γ = 0.02 dextral + shear. (b) The microstructure is deformed with wrapping boundaries. (c) The + microstructure is repositioned back to a square before the next increment of + strain. (d) Zoom in of (a) showing the three flynn (grain) types: strong phase + (SP), intermediate-strength phase (IP), and weak phase (WP). (e) Zoom-in of + (d) showing that flynn grain boundaries are defined by double (blue) and triple + (red) bnodes joined by straight lines. An additional grid of unconnected nodes + (unodes, black) is overlain on flynns and stores state variables and flynn properties.' +animation: + src: ./graphics/ + caption: '' +model_setup_info: + url: '' + summary: "A three-phase microstructure was used with 15% weak phase (WP), 42.5% + intermediate-strength phase (IP) and 42.5% strong phase (SP). The starting model + was square and defined by 2,748 equant grains with a random distribution of the + three phases. Velocity boundary conditions with constant strain rate were applied + with top-to-the-right (dextral) simple shear in increments of Δγ = 0.02, up to + a finite shear strain of γ=18 in 900 steps. After each deformation step, the model + was repositioned to the initial square unit cell and grain properties mapped back + on to the grid before the next deformation step. A power-law viscous rheology\ + \ was employed with n = 3.\r\nEach phase was associated with a mineral model + that specified the slip systems and their effective strength or resistance to + shear. The mineral models employed attempted to broadly approximate the most important + features of mica (WP), quartz (IP), and feldspar (SP) in order to more closely + correspond to previous experimental work. To model the WP we used a mineral model + with hexagonal symmetry and three slip systems (basal, prismatic, and pyramidal) + because, although mica is monoclinic, it is pseudohexagonal and its most important + mechanical feature is an easy glide plane since shear in mica is easier parallel + to the basal plane than in any other direction. Accordingly we set the basal + plane of the WP to one tenth of the non-basal WP planes, producing a mechanically + anisotropic WP. Feldspar is also pseudohexagonal, so we employed a hexagonal mineral + model for the SP, but with all slip systems at the same effective strength. For + the IP we used the crystal model of quartz with four slip systems (basal, prismatic, + pyramidal and pyramidal ) and gave the effective strength of all four + slip systems the same value, making the IP effectively mechanically isotropic. + The IP was 25x stronger than the WP basal plane and the SP was 2x stronger than + the IP." +model_files: + url: '' + notes: The starting microstructure for the model is an .Elle file that can be viewed + and edited in notepad or similar. The microstructure can be viewed with the showelle + program. To run the simulation the program Elle can be downloaded from elle.ws. + file_tree: '' + existing_identifier: '' + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/finch-2024-cprime/catalog.html + include: true +dataset: + url: '' + notes: Output data consists of 900 files that are 21 Mb each and an avi movie that + is 80 Mb + existing_identifier: '' + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/finch-2024-cprime/catalog.html + include: true +metadataFile: ro-crate-metadata.json +--- diff --git a/src/pages/models/finch-2024-cprime/license.txt b/src/pages/models/finch-2024-cprime/license.txt new file mode 100644 index 0000000..da6ab6c --- /dev/null +++ b/src/pages/models/finch-2024-cprime/license.txt @@ -0,0 +1,396 @@ +Attribution 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. 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For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/src/pages/models/finch-2024-cprime/ro-crate-metadata.json b/src/pages/models/finch-2024-cprime/ro-crate-metadata.json new file mode 100644 index 0000000..dc1255f --- /dev/null +++ b/src/pages/models/finch-2024-cprime/ro-crate-metadata.json @@ -0,0 +1,550 @@ +{ + "@context": [ + "https://www.researchobject.org/ro-crate/1.1/context.jsonld", + "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld" + ], + "@graph": [ + { + "@id": "#datasetCreation", + "@type": "CreateAction", + "agent": [ + { + "@id": "https://orcid.org/0000-0001-9699-2769" + }, + { + "@id": "https://orcid.org/0000-0002-6469-3526" + }, + { + "@id": "_:b7" + }, + { + "@id": "https://orcid.org/0000-0003-4598-8385" + }, + { + "@id": "https://orcid.org/0000-0002-6148-2600" + }, + { + "@id": "https://orcid.org/0000-0002-1317-6289" + }, + { + "@id": "https://orcid.org/0000-0002-8639-3890" + }, + { + "@id": "https://orcid.org/0000-0001-5828-8711" + } + ], + "description": "Running the computational model", + "endTime": "", + "instrument": { + "@id": "https://elle.ws/" + }, + "object": { + "@id": "model_code_inputs" + }, + "result": { + "@id": "model_output_data" + }, + "startTime": "" + }, + { + "@id": "./", + "@type": "Dataset", + "about": { + "@id": "https://linked.data.gov.au/def/anzsrc-for/2020/370401" + }, + "abstract": "", + "alternateName": "finch-2024-cprime", + "citation": { + "@id": "http://dx.doi.org/10.1016/j.jsg.2020.104091" + }, + "contributor": "", + "creativeWorkStatus": "completed", + "creator": [ + { + "@id": "https://orcid.org/0000-0001-9699-2769" + }, + { + "@id": "https://orcid.org/0000-0002-6469-3526" + }, + { + "@id": "_:b4" + }, + { + "@id": "https://orcid.org/0000-0003-4598-8385" + }, + { + "@id": "https://orcid.org/0000-0002-6148-2600" + }, + { + "@id": "https://orcid.org/0000-0002-1317-6289" + }, + { + "@id": "https://orcid.org/0000-0002-8639-3890" + }, + { + "@id": "https://orcid.org/0000-0001-5828-8711" + } + ], + "datePublished": "2024-10-29T02:36:04.000Z", + "description": "This model simulates the development of C' shear bands in ductile shear zones. 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/dev/null +++ b/src/pages/models/sachau-2022-icesheet/index.md @@ -0,0 +1,110 @@ +--- +templateKey: model +slug: sachau-2022-icesheet +title: ISMIP-HOM benchmark experiments using Underworld +date: '2024-08-19T07:33:52.000Z' +featuredpost: +for_codes: + - 370401 +status: + - completed +doi: '' +url: https://mate.science//models/sachau-2022-icesheet +creditText: '' +software: + name: 'Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud' + doi: https://doi.org/10.5281/zenodo.5935717 + url_source: '' +licence: + licence_url: https://creativecommons.org/licenses/by/4.0/legalcode + licence_image: ../../../img/licence/by.png + description: Creative Commons Attribution 4.0 International + licence_file: license.txt +submitter: + name: Dan + family_name: Sandiford + ORCID: https://orcid.org/0000-0002-2207-6837 +creators: + - name: Till + family_name: Sachau + ORCID: 0000-0002-3790-1385 + - name: Haibin + family_name: Yang + ORCID: 0000-0002-8628-3704 + - name: Paul D. + family_name: Bons + ORCID: 0000-0002-6469-3526 + - name: Louis-Noel + family_name: Moresi + ORCID: 0000-0003-3685-174X +associated_publication: + title: ISMIP-HOM benchmark experiments using Underworld + url: http://dx.doi.org/10.5194/gmd-15-8749-2022 + doi: 10.5194/gmd-15-8749-2022 + publisher: Copernicus GmbH + journal: Geoscientific Model Development + date: 2022-12-2 + authors: + - name: Till + family_name: Sachau + - name: Haibin + family_name: Yang + - name: Justin + family_name: Lang + - name: Paul D. + family_name: Bons + - name: Louis + family_name: Moresi +compute_info: + name: '' + organisation: '' + url: '' + doi: '' +research_tags: + - ice-sheet + - benchmark + - Stokes + - anisotropy + - mechanical +compute_tags: + - Python + - Finite-Element + - Particle-in-cell +funder: + - name: AuScope + doi: https://ror.org/04s1m4564 + - name: University of Tübingen + doi: https://ror.org/03a1kwz48 +abstract: "Abstract. Numerical models have become an indispensable tool for\nunderstanding and predicting the flow of ice sheets and glaciers. Here we\npresent the full-Stokes software package Underworld to the glaciological\ncommunity. The code is already well established in simulating complex\ngeodynamic systems. Advantages for glaciology are that it provides a\nfull-Stokes solution for elastic–viscous–plastic materials and includes\nmechanical anisotropy. Underworld uses a material point method to track the\nfull history information of Lagrangian material points, of stratigraphic\nlayers and of free surfaces. We show that Underworld successfully reproduces\nthe results of other full-Stokes models for the benchmark experiments of the Ice Sheet Model Intercomparison Project for Higher-Order Models\n(ISMIP-HOM). Furthermore, we test finite-element meshes with different\ngeometries and highlight the need to be able to adapt the finite-element\ngrid to discontinuous interfaces between materials with strongly different\nproperties, such as the ice–bedrock boundary.\n " +description: Knowledge of the internal structures of the major continental ice sheets is improving, thanks to new investigative techniques. These structures are an essential indication of the flow behavior and dynamics of ice transport, which in turn is important for understanding the actual impact of the vast amounts of water trapped in continental ice sheets on global sea-level rise. The software studied here is specifically designed to simulate such structures and their evolution. +images: + landing_image: + src: ./graphics/gmd-15-8749-2022-f09.png + caption: 'Marker lines prior to (a) and after 750 years of flow of (b) isotropic and (c) anisotropic ice. The axial plane of the resulting shear fold in isotropic ice mimics the bedrock topography, while it is controlled by shearing along a horizontal shear zone in the case of anisotropic ice. Green: bedrock, flow to the right.' + graphic_abstract: + src: ./graphics/graphic_abstract.png + caption: 'Velocity field and strain rate field in isotropic ice (1) and inisotropic ice (2). Large strain rates and velocities occur in the vicinity of the bottleneck formed by the crest of the hill. Green: bedrock. For velocity, red is 70 m a−1 and blue is 0 m a−1. For strain rate, red is 0.032 $a^{−1}$, and blue is 0 $a^{−1}$.' + model_setup: + src: ./graphics/gmd-15-8749-2022-f01-web.png + caption: (a) 2D geometry of Experiment B. This is identical to a section parallel X located at yˆ = 0.25 in Experiment A (right). Sloping angle α is given in degrees. Also depicted is the velocity field of the flowing ice, resulting for a model width L of 5000 m from the simulations described below. Color and arrow length visualize the amount of velocity. (b) Bedrock topography for Experiment A and general naming scheme for the axes of 3D experiments. +animation: + src: ./graphics/ + caption: '' +model_setup_info: + url: '' + summary: '' +model_files: + url: '' + notes: '' + file_tree: '' + existing_identifier: https://doi.org/10.5281/zenodo.7384424 + nci_file_path: https://thredds.nci.org.au/thredds/catalog/nm08/MATE/sachau-2022-icesheet/catalog.html + include: true +dataset: + url: '' + notes: '' + existing_identifier: https://doi.org/10.5281/zenodo.7384424 + nci_file_path: https://thredds.nci.org.au/thredds/catalog/nm08/MATE/sachau-2022-icesheet/catalog.html + include: true +metadataFile: ro-crate-metadata.json +--- diff --git a/src/pages/models/sachau-2022-icesheet/license.txt b/src/pages/models/sachau-2022-icesheet/license.txt new file mode 100644 index 0000000..da6ab6c --- /dev/null +++ b/src/pages/models/sachau-2022-icesheet/license.txt @@ -0,0 +1,396 @@ +Attribution 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. 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Numerical models have become an indispensable tool for\nunderstanding and predicting the flow of ice sheets and glaciers. Here we\npresent the full-Stokes software package Underworld to the glaciological\ncommunity. The code is already well established in simulating complex\ngeodynamic systems. Advantages for glaciology are that it provides a\nfull-Stokes solution for elastic\u2013viscous\u2013plastic materials and includes\nmechanical anisotropy. Underworld uses a material point method to track the\nfull history information of Lagrangian material points, of stratigraphic\nlayers and of free surfaces. We show that Underworld successfully reproduces\nthe results of other full-Stokes models for the benchmark experiments of the Ice Sheet Model Intercomparison Project for Higher-Order Models\n(ISMIP-HOM). Furthermore, we test finite-element meshes with different\ngeometries and highlight the need to be able to adapt the finite-element\ngrid to discontinuous interfaces between materials with strongly different\nproperties, such as the ice\u2013bedrock boundary.\n ", + "alternateName": "sachau-2022-icesheet", + "citation": { + "@id": "http://dx.doi.org/10.5194/gmd-15-8749-2022" + }, + "contributor": "", + "creativeWorkStatus": "completed", + "creator": [ + { + "@id": "https://orcid.org/0000-0002-3790-1385" + }, + { + "@id": "https://orcid.org/0000-0002-8628-3704" + }, + { + "@id": "https://orcid.org/0000-0002-6469-3526" + }, + { + "@id": "https://orcid.org/0000-0003-3685-174X" + } + ], + "datePublished": "2024-08-19T07:33:52.000Z", + "description": "Knowledge of the internal structures of the major continental ice sheets is improving, thanks to new investigative techniques. These structures are an essential indication of the flow behavior and dynamics of ice transport, which in turn is important for understanding the actual impact of the vast amounts of water trapped in continental ice sheets on global sea-level rise. The software studied here is specifically designed to simulate such structures and their evolution.", + "funder": [ + { + "@id": "https://ror.org/04s1m4564" + }, + { + "@id": "https://ror.org/03a1kwz48" + } + ], + "hasPart": [ + { + "@id": "model_inputs" + }, + { + "@id": "model_outputs" + }, + { + "@id": "website_material" + }, + { + "@id": "metadata_trail" + }, + { + "@id": "#datasetCreation" + } + ], + "identifier": [ + "https://doi.org/10.25914/fhew-h678" + ], + "isBasedOn": [], + "isPartOf": "http://dx.doi.org/10.25914/yrzp-g882", + "keywords": [ + "ice-sheet", + "benchmark", + "Stokes", + "anisotropy", + "mechanical" + ], + "license": "https://creativecommons.org/licenses/by/4.0/legalcode", + "name": "ISMIP-HOM benchmark experiments using Underworld", + "publisher": [ + { + "@id": "https://ror.org/04s1m4564" + }, + { + "@id": "https://ror.org/04yx6dh41" + } + ], + "spatialCoverage": "", + "temporalCoverage": "", + "url": [ + "https://mate.science/models/sachau-2022-icesheet/", + "https://github.com/ModelAtlasofTheEarth/sachau-2022-icesheet/" + ], + "version": "", + "creditText": [ + "Sachau, T., Yang, H., Bons, P., & Moresi, Louis. 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Numerical models have become an indispensable tool for\nunderstanding and predicting the flow of ice sheets and glaciers. Here we\npresent the full-Stokes software package Underworld to the glaciological\ncommunity. The code is already well established in simulating complex\ngeodynamic systems. Advantages for glaciology are that it provides a\nfull-Stokes solution for elastic\u2013viscous\u2013plastic materials and includes\nmechanical anisotropy. Underworld uses a material point method to track the\nfull history information of Lagrangian material points, of stratigraphic\nlayers and of free surfaces. We show that Underworld successfully reproduces\nthe results of other full-Stokes models for the benchmark experiments of the Ice Sheet Model Intercomparison Project for Higher-Order Models\n(ISMIP-HOM). 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polanco-2024-deltas +title: Flexural isostatic response of continental-scale deltas to climatically driven + sea level changes +date: '2024-05-24T00:55:53.000Z' +featuredpost: +for_codes: + - 370401 +status: + - completed +doi: https://doi.org/10.25914/4m82-y773 +url: https://mate.science//models/polanco-2024-deltas +creditText: Polanco, S., Blum, M., Salles, T., Frederick, B., Farrington, R., Ding, + X., Mather, B., Mallard, C., & Moresi, L. (2024). Flexural isostatic response of + continental-scale deltas to climatically driven sea level changes [Data set]. AuScope, + National Computational Infrastructure. https://doi.org/10.25914/4m82-y773 +software: + name: Badlands + doi: https://doi.org/10.5281/zenodo.1069573 + url_source: https://github.com/badlands-model/badlands +licence: + licence_url: https://creativecommons.org/licenses/by/4.0/legalcode + licence_image: ../../../img/licence/by.png + description: Creative Commons Attribution 4.0 International + licence_file: license.txt +submitter: + name: Sara + family_name: Polanco + ORCID: https://orcid.org/0000-0002-1270-4377 +creators: + - name: Sara + family_name: Polanco + ORCID: 0000-0002-1270-4377 + - name: Michael + family_name: Blum + ORCID: 0000-0003-0263-0084 + - name: Tristan + family_name: Salles + ORCID: 0000-0001-6095-7689 + - name: Bruce C + family_name: Frederick + ORCID: Invalid ORCiD ID + - name: Rebecca + family_name: Farrington + ORCID: 0000-0002-2594-6965 + - name: Xuesong + family_name: Ding + ORCID: 0000-0003-3693-932X + - name: Ben + family_name: Mather + ORCID: 0000-0003-3566-1557 + - name: Claire A. + family_name: Mallard + ORCID: 0000-0003-2595-2414 + - name: Louis-Noel + family_name: Moresi + ORCID: 0000-0003-3685-174X +associated_publication: + title: Flexural isostatic response of continental-scale deltas to climatically driven sea level changes + url: http://dx.doi.org/10.5194/esurf-12-301-2024 + doi: 10.5194/esurf-12-301-2024 + publisher: Copernicus GmbH + journal: Earth Surface Dynamics + date: 2024-2-1 + authors: + - name: Sara + family_name: Polanco + - name: Mike + family_name: Blum + - name: Tristan + family_name: Salles + - name: Bruce C. + family_name: Frederick + - name: Rebecca + family_name: Farrington + - name: Xuesong + family_name: Ding + - name: Ben + family_name: Mather + - name: Claire + family_name: Mallard + - name: Louis + family_name: Moresi +compute_info: + name: + organisation: + url: + doi: +research_tags: + - Flexural isostasy + - Glacial isostatic adjustment (GIA) + - Deltaic depocenters + - Stratigraphic record +compute_tags: [] +funder: + - name: Australian Research Council + doi: + - name: Australian–American Fulbright Commission + doi: + - name: The University of Melbourne + doi: +funding: + - name: Australian Research Council + doi: + number_id: IH130200012 +abstract: "Abstract. The interplay between climate-forced sea level change, erosional + and depositional processes, and flexural isostasy in deep time on passive margin + deltas remains poorly understood. We performed a series of conceptual simulations + to investigate flexural isostatic responses to high-frequency fluctuations in water + and sediment load associated with climatically driven sea level changes. We model + a large drainage basin that discharges to a continental margin and produces a large + deltaic depocenter, then prescribe synthetic and climatic-driven sea level curves + of different frequencies to assess flexural response. Results show that flexural + isostatic responses are bidirectional over 100–1000 kyr timescales and are in sync + with the magnitude, frequency, and direction of sea level fluctuations and that + isostatic adjustments play an important role in driving along-strike and cross-shelf + river mouth migration and sediment accumulation. Our findings demonstrate that climate-forced + sea level changes produce a feedback mechanism that results in self-sustaining creation + of accommodation into which sediment is deposited and plays a major role in delta + morphology and stratigraphic architecture.\n " +description: Two-thirds of the world's most populated cities are situated close to + deltas. We use computer simulations to understand how deltas sink or rise in response + to climate-driven sea level changes that operate from thousands to millions of years. + Our research shows that because of the interaction between the outer layers of the + Earth, sediment transport, and sea level changes deltas develop a self-regulated + mechanism that modifies the space they need to gain or lose land. +images: + landing_image: + src: ./graphics/fig1.png + caption: Our simulations produce catchment areas, river lengths, and volumes of + deposited sediment that are consistent with the ranges observed in continental-scale + deltas such as the Mississippi and Amazon rivers. (a) Example showing the outputs + from the numerical simulation showing the elevation and bathymetry (top) and + cumulative flexure (bottom). Model dimensions are 4500 km x 2000 km, with a + vertical exaggeration of 100x. (b) Scatter plot of river length (top) and 405 + shelf width (bottom) versus catchment area from river systems. Data is from + Somme et al. (2009), Nyberg et al. (2018), Blum et al. (2013, 2017) and simulations + presented in this study. Pal= Paleocene, Oli=Oligocene, PM= Paleo-Mississippi. + (c) Example of synthetic stratigraphy from a simulation without (left) and with + flexural compensation (right). + graphic_abstract: + src: ./graphics/egusphere-2023-53_Fig5.png + caption: "\nOutput of numerical simulations with imposed synthetic sea-level curves + with different frequencies (f) showing elevation, bathymetry and discharge of + the river mouth at 8 Myr. Note the difference in lateral extent, elevation due + to flexural rebound, and river mouth morphology between the flexural (top) and + non-flexural (bottom) cases. (b) Change of river mouth location though time + for simulations where synthetic and empirical sea-level curves were imposed. + Mean river mouth transit distances in the non-flexurally compensated simulations + are shown in lighter shades, whereas the flexurally compensated cases are shown + in darker shades. (c) Bar plot showing the frequency of the number of times + where the de-trended river-mouth trajectory crosses an arbitrary point in the + shelf an indicator of how often the river mouth is close to the shelf break. + NF = non-flexural, F = flexural, IH = icehouse, and GH = greenhouse." + model_setup: + src: ./graphics/fig_setup.png + caption: +animation: + src: ./graphics/animation.mp4 + caption: The animation shows the surface and stratigraphic evolution of our simulated + continental-scale deltas. We let each simulation initialize and run for 2 Myr + without any sea-level fluctuations so that the delta can reach dynamic equilibrium + without any disturbances in base level, then impose climate-forced sea-level changes. +model_setup_info: + url: + summary: Planview of model setup (top) and cross-section in the middle of the modeling + domain. The initial configuration of the modeling domain resembles the topography + of a natural source-to-sink system with 3400 m elevation in the headwaters, a + length of 4500 km, a downstream-decreasing fluvial channel slope, and successive + inflections in gradient associated with the coastal-plain to continental shelf + and shelf to slope transitions. To ensure that our simulated drainage basin produces + a point-source for sediment input to the marine domain we imposed a longitudinal + topographic low in the middle of the model. +model_files: + url: + notes: "The input and boundary conditions for the model are structured as follows:\r + \nan input XML file where the initial and boundary conditions are set\r\na data + folder containing the initial surface and the boundary conditions, in this case + different sea-level scenarios\r\na series of IPython Notebooks used to run the + experiment and perform some pre or post-processing tasks." + file_tree: + existing_identifier: + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/polanco-2024-deltas/catalog.html + include: true +dataset: + url: + notes: "The model output data is stored in a hdf5 format. You will see a h5 folder + and a series of xdmf files. \r\n- **h5** folder contains the **hdf5** data, all + the information computed by the model are stored in these files. You will have + at least the *tin* (surface) and *flow* (stream network) dataset and also the + *sed* (stratigraphy) data if the stratal structure is computed in your simulation.\r + \n\r\n- two **.xdmf** files for the surface (**tin_series.xdmf**) and the flow + network (**flow_series.xdmf**) that read the **xmf** files through time." + existing_identifier: + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/polanco-2024-deltas/catalog.html + include: true +metadataFile: ro-crate-metadata.json +--- diff --git a/src/pages/models/test-2024-build1/license.txt b/src/pages/models/test-2024-build1/license.txt new file mode 100644 index 0000000..da6ab6c --- /dev/null +++ b/src/pages/models/test-2024-build1/license.txt @@ -0,0 +1,396 @@ +Attribution 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. 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For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/src/pages/models/test-2024-build1/ro-crate-metadata.json b/src/pages/models/test-2024-build1/ro-crate-metadata.json new file mode 100644 index 0000000..159891f --- /dev/null +++ b/src/pages/models/test-2024-build1/ro-crate-metadata.json @@ -0,0 +1,543 @@ +{ + "@context": [ + "https://www.researchobject.org/ro-crate/1.1/context.jsonld", + "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld" + ], + "@graph": [ + { + "@id": "#datasetCreation", + "@type": "CreateAction", + "agent": { + "@id": "https://orcid.org/0000-0002-1270-4377" + }, + "description": "Running the computational model", + "endTime": "", + "instrument": { + "@id": "https://doi.org/10.5281/zenodo.1069573" + }, + "object": { + "@id": "model_inputs" + }, + "result": { + "@id": "model_outputs" + }, + "startTime": "" + }, + { + "@id": "./", + "@type": "Dataset", + "about": { + "@id": "https://linked.data.gov.au/def/anzsrc-for/2020/370401" + }, + "abstract": "Abstract. The interplay between climate-forced sea level change, erosional and depositional processes, and flexural isostasy in deep time on passive margin deltas remains poorly understood. We performed a series of conceptual simulations to investigate flexural isostatic responses to high-frequency fluctuations in water and sediment load associated with climatically driven sea level changes. We model a large drainage basin that discharges to a continental margin and produces a large deltaic depocenter, then prescribe synthetic and climatic-driven sea level curves of different frequencies to assess flexural response. Results show that flexural isostatic responses are bidirectional over 100\u20131000\u2009kyr timescales and are in sync with the magnitude, frequency, and direction of sea\u00a0level fluctuations and that isostatic adjustments play an important role in driving along-strike and cross-shelf river mouth migration and sediment accumulation. Our findings demonstrate that climate-forced sea level changes produce a feedback mechanism that results in self-sustaining creation of accommodation into which sediment is deposited and plays a major role in delta morphology and stratigraphic architecture.\n ", + "alternateName": "polanco-2024-deltas", + "citation": { + "@id": "http://dx.doi.org/10.5194/esurf-12-301-2024" + }, + "contributor": "", + "creativeWorkStatus": "completed", + "creator": [ + { + "@id": "https://orcid.org/0000-0002-1270-4377" + }, + { + "@id": "https://orcid.org/0000-0003-0263-0084" + }, + { + "@id": "https://orcid.org/0000-0001-6095-7689" + }, + { + "@id": "_:b2" + }, + { + "@id": "https://orcid.org/0000-0002-2594-6965" + }, + { + "@id": "https://orcid.org/0000-0003-3693-932X" + }, + { + "@id": "https://orcid.org/0000-0003-3566-1557" + }, + { + "@id": "https://orcid.org/0000-0003-2595-2414" + }, + { + "@id": "https://orcid.org/0000-0003-3685-174X" + } + ], + "datePublished": "2024-05-24T00:55:53.000Z", + "description": "Two-thirds of the world's most populated cities are situated close to deltas. We use computer simulations to understand how deltas sink or rise in response to climate-driven sea level changes that operate from thousands to millions of years. Our research shows that because of the interaction between the outer layers of the Earth, sediment transport, and sea level changes deltas develop a self-regulated mechanism that modifies the space they need to gain or lose land.", + "funder": [ + { + "@id": "_:b3" + }, + { + "@id": "_:b4" + }, + { + "@id": "_:b5" + } + ], + "hasPart": [ + { + "@id": "model_inputs" + }, + { + "@id": "model_outputs" + }, + { + "@id": "website_material" + }, + { + "@id": "metadata_trail" + }, + { + "@id": "#datasetCreation" + } + ], + "identifier": [ + "https://doi.org/10.25914/4m82-y773" + ], + "isBasedOn": [], + "isPartOf": "http://dx.doi.org/10.25914/yrzp-g882", + "keywords": [ + "Flexural isostasy", + "Glacial isostatic adjustment (GIA)", + "Deltaic depocenters", + "Stratigraphic record" + ], + "license": "https://creativecommons.org/licenses/by/4.0/legalcode", + "name": "Flexural isostatic response of continental-scale deltas to climatically driven sea level changes", + "publisher": [ + { + "@id": "https://ror.org/04s1m4564" + }, + { + "@id": "https://ror.org/04yx6dh41" + } + ], + "spatialCoverage": "", + "temporalCoverage": "", + "url": [ + "https://mate.science/models/polanco-2024-deltas/", + "https://github.com/ModelAtlasofTheEarth/polanco-2024-deltas/" + ], + "version": "", + "funding": { + "@id": "_:b6" + }, + "creditText": [ + "Polanco, S., Blum, M., Salles, T., Frederick, B., Farrington, R., Ding, X., Mather, B., Mallard, C., & Moresi, L. (2024). Flexural isostatic response of continental-scale deltas to climatically driven sea level changes [Data set]. 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The interplay between climate-forced sea level change, erosional and depositional processes, and flexural isostasy in deep time on passive margin deltas remains poorly understood. We performed a series of conceptual simulations to investigate flexural isostatic responses to high-frequency fluctuations in water and sediment load associated with climatically driven sea level changes. We model a large drainage basin that discharges to a continental margin and produces a large deltaic depocenter, then prescribe synthetic and climatic-driven sea level curves of different frequencies to assess flexural response. Results show that flexural isostatic responses are bidirectional over 100\u20131000\u2009kyr timescales and are in sync with the magnitude, frequency, and direction of sea\u00a0level fluctuations and that isostatic adjustments play an important role in driving along-strike and cross-shelf river mouth migration and sediment accumulation. Our findings demonstrate that climate-forced sea level changes produce a feedback mechanism that results in self-sustaining creation of accommodation into which sediment is deposited and plays a major role in delta morphology and stratigraphic architecture.\n ", + "author": [ + { + "@id": "http://orcid.org/0000-0002-1270-4377" + }, + { + "@id": "_:b0" + }, + { + "@id": "http://orcid.org/0000-0001-6095-7689" + }, + { + "@id": "_:b1" + }, + { + "@id": "http://orcid.org/0000-0002-2594-6965" + }, + { + "@id": "http://orcid.org/0000-0003-3693-932X" + }, + { + "@id": "http://orcid.org/0000-0003-3566-1557" + }, + { + "@id": "http://orcid.org/0000-0003-2595-2414" + }, + { + "@id": "http://orcid.org/0000-0003-3685-174X" + } + ], + "name": "Flexural isostatic response of continental-scale deltas to climatically driven sea level changes" + }, + { + "@id": "http://orcid.org/0000-0001-6095-7689", + "@type": "Person", + "familyName": "Salles", + "givenName": "Tristan" + }, + { + "@id": 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submission.", + "encodingFormat": "text/markdown", + "name": "Issue Body" + }, + { + "@id": "metadata_trail/issue_dict.json", + "@type": "CreativeWork", + "description": "json file representing the dictionary that is constructured by model_submission/.github/scripts/parse_issue.py", + "encodingFormat": "application/json", + "name": "Issue Dictionary" + }, + { + "@id": "metadata_trail/nci_iso.csv", + "@type": "CreativeWork", + "description": "Simple crosswalk of metadata into ISO 19115 format/schema compatible with NCI GeoNwtework", + "encodingFormat": "text/csv", + "name": "NCI ISO Crosswalk" + }, + { + "@id": "metadata_trail/ro-crate-metadata-nested.json", + "@type": "CreativeWork", + "description": "Nested version of RO-Crate, hasn't been flattenened.", + "encodingFormat": "application/json", + "name": "Nested version of RO-Crate" + }, + { + "@id": "model_inputs", + "@type": [ + "Dataset", + "SoftwareSourceCode" + ], + "contentSize": "", + "creator": [ + { + "@id": "https://orcid.org/0000-0002-1270-4377" + }, + { + "@id": "https://orcid.org/0000-0003-0263-0084" + }, + { + "@id": "https://orcid.org/0000-0001-6095-7689" + }, + { + "@id": "_:b8" + }, + { + "@id": "https://orcid.org/0000-0002-2594-6965" + }, + { + "@id": "https://orcid.org/0000-0003-3693-932X" + }, + { + "@id": "https://orcid.org/0000-0003-3566-1557" + }, + { + "@id": "https://orcid.org/0000-0003-2595-2414" + }, + { + "@id": "https://orcid.org/0000-0003-3685-174X" + } + ], + "description": "Code and inputs for computational model", + "identifier": [ + "https://doi.org/10.25914/4m82-y773" + ], + "keywords": "", + "memoryRequirements": "./", + "processorRequirements": "", + "programmingLanguage": "", + "runtimePlatform": "", + "storageRequirements": "./", + "url": "https://thredds.nci.org.au/thredds/catalog/nm08/MATE/polanco-2024-deltas/catalog.html", + "version": "" + }, + { + "@id": "model_outputs", + "@type": "Dataset", + "contentSize": "", + "creator": { + "@id": "https://orcid.org/0000-0002-1270-4377" + }, + "description": "The model output data is stored in a hdf5 format. You will see a h5 folder and a series of xdmf files. \r\n- **h5** folder contains the **hdf5** data, all the information computed by the model are stored in these files. You will have at least the *tin* (surface) and *flow* (stream network) dataset and also the *sed* (stratigraphy) data if the stratal structure is computed in your simulation.\r\n\r\n- two **.xdmf** files for the surface (**tin_series.xdmf**) and the flow network (**flow_series.xdmf**) that read the **xmf** files through time.", + "fileFormat": "./", + "identifier": [ + "https://doi.org/10.25914/4m82-y773" + ], + "url": "https://thredds.nci.org.au/thredds/catalog/nm08/MATE/polanco-2024-deltas/catalog.html" + }, + { + "@id": "ro-crate-metadata.json", + "@type": "CreativeWork", + "conformsTo": { + "@id": "https://w3id.org/ro/crate/1.1" + }, + "about": { + "@id": "./" + }, + "description": "RO-Crate Metadata File Descriptor (this file)" + }, + { + "@id": "website_material", + "@type": [ + "Dataset", + "CreativeWork" + ], + "creator": [ + { + "@id": "https://orcid.org/0000-0002-1270-4377" + }, + { + "@id": "https://orcid.org/0000-0003-0263-0084" + }, + { + "@id": "https://orcid.org/0000-0001-6095-7689" + }, + { + "@id": "_:b9" + }, + { + "@id": "https://orcid.org/0000-0002-2594-6965" + }, + { + "@id": "https://orcid.org/0000-0003-3693-932X" + }, + { + "@id": "https://orcid.org/0000-0003-3566-1557" + }, + { + "@id": "https://orcid.org/0000-0003-2595-2414" + }, + { + "@id": "https://orcid.org/0000-0003-3685-174X" + } + ], + "description": "material for m@te website", + "fileFormat": "./" + } + ] +} \ No newline at end of file diff --git a/src/pages/models/test-2024-build1/ro-crate-preview.html b/src/pages/models/test-2024-build1/ro-crate-preview.html new file mode 100644 index 0000000..8c778a5 --- /dev/null +++ b/src/pages/models/test-2024-build1/ro-crate-preview.html @@ -0,0 +1,1985 @@ + + + + + + + + + + + + + + + + + + + + + + + + +
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Flexural isostatic response of continental-scale deltas to climatically driven sea level changes

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+ + + + + + + diff --git a/src/pages/models/test-2024-build2/assets/.gitkeep b/src/pages/models/test-2024-build2/assets/.gitkeep new file mode 100644 index 0000000..8b13789 --- /dev/null +++ b/src/pages/models/test-2024-build2/assets/.gitkeep @@ -0,0 +1 @@ + diff --git a/src/pages/models/test-2024-build2/graphics/.gitkeep b/src/pages/models/test-2024-build2/graphics/.gitkeep new file mode 100644 index 0000000..d3f5a12 --- /dev/null +++ b/src/pages/models/test-2024-build2/graphics/.gitkeep @@ -0,0 +1 @@ + diff --git a/src/pages/models/test-2024-build2/graphics/animation.mp4 b/src/pages/models/test-2024-build2/graphics/animation.mp4 new file mode 100644 index 0000000..98bfd66 Binary files /dev/null and b/src/pages/models/test-2024-build2/graphics/animation.mp4 differ diff --git a/src/pages/models/test-2024-build2/graphics/fig1.png b/src/pages/models/test-2024-build2/graphics/fig1.png new file mode 100644 index 0000000..f3f575f Binary files /dev/null and b/src/pages/models/test-2024-build2/graphics/fig1.png differ diff --git a/src/pages/models/test-2024-build2/graphics/fig4.png b/src/pages/models/test-2024-build2/graphics/fig4.png new file mode 100644 index 0000000..7cbe555 Binary files /dev/null and b/src/pages/models/test-2024-build2/graphics/fig4.png differ diff --git a/src/pages/models/test-2024-build2/graphics/initialconds.png b/src/pages/models/test-2024-build2/graphics/initialconds.png new file mode 100644 index 0000000..001fc50 Binary files /dev/null and b/src/pages/models/test-2024-build2/graphics/initialconds.png differ diff --git a/src/pages/models/test-2024-build2/index.md b/src/pages/models/test-2024-build2/index.md new file mode 100644 index 0000000..efdccca --- /dev/null +++ b/src/pages/models/test-2024-build2/index.md @@ -0,0 +1,177 @@ +--- +templateKey: model +slug: sandiford-2021-detachment +title: 'Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid‐Block + Rotation and Apparent Unbending' +date: '2024-05-17T01:55:42.000Z' +featuredpost: +for_codes: + - 370401 +status: +doi: https://doi.org/10.25914/r3ya-bg54 +url: https://mate.science/models/sandiford-2021-detachment +creditText: 'Sandiford, D., Brune, S., Glerum, A., Naliboff, J., & Whittaker, J. (2024). + Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid‐Block Rotation + and Apparent Unbending [Data set]. AuScope, National Computational Infrastructure. + https://doi.org/10.25914/r3ya-bg54' +software: + name: 'geodynamics/aspect: ASPECT 2.5.0' + doi: https://doi.org/10.5281/zenodo.8200213 + url_source: https://github.com/geodynamics/aspect +licence: + licence_url: https://creativecommons.org/licenses/by/4.0/legalcode + licence_image: ../../../img/licence/by.png + description: Creative Commons Attribution 4.0 International + licence_file: license.txt +submitter: + name: Dan + family_name: Sandiford + ORCID: https://orcid.org/0000-0002-2207-6837 +creators: + - name: Dan + family_name: Sandiford + ORCID: 0000-0002-2207-6837 + - name: Sascha + family_name: Brune + ORCID: 0000-0003-4985-1810 + - name: Anne + family_name: Glerum + ORCID: 0000-0002-9481-1749 + - name: John + family_name: Naliboff + ORCID: 0000-0002-5697-7203 + - name: Joanne M. + family_name: Whittaker + ORCID: 0000-0002-3170-3935 +associated_publication: + title: 'Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid‐Block + Rotation and Apparent Unbending' + url: http://dx.doi.org/10.1029/2021gc009681 + doi: 10.1029/2021gc009681 + publisher: American Geophysical Union (AGU) + journal: Geochemistry, Geophysics, Geosystems + date: 2021-4 + authors: + - name: Dan + family_name: Sandiford + - name: Sascha + family_name: Brune + - name: Anne + family_name: Glerum + - name: John + family_name: Naliboff + - name: Joanne M. + family_name: Whittaker +compute_info: + name: Gadi Supercomputer + organisation: National Computational Infrastructure + url: https://pid.nci.org.au/doi/f5966_0057_9267_4579 + doi: https://doi.org/10.25914/608bfd1838db2 +research_tags: + - tectonics + - faulting + - detachment faults +compute_tags: + - C++ + - finite-element + - mesh-refinement +funder: + - name: Australian Research Council + doi: https://ror.org/05mmh0f86 + - name: '' + doi: https://www.helmholtz.de/ +funding: + - name: Australian Research Council + doi: https://ror.org/05mmh0f86 + number_id: DP180102280 + - name: '' + doi: https://www.helmholtz.de/ + number_id: VH-NG-1132 +abstract: Seafloor spreading at slow rates can be accommodated on large‐offset oceanic + detachment faults (ODFs), that exhume lower crustal and mantle rocks in footwall + domes termed oceanic core complexes (OCCs). Footwall rocks experience large rotation + during exhumation, yet important aspects of the kinematics—particularly the relative + roles of solid‐block rotation and flexure—are not clearly understood. Using a high‐resolution + numerical model, we explore the exhumation kinematics in the footwall beneath an + emergent ODF/OCC. A key feature of the models is that footwall motion is dominated + by solid‐block rotation, accommodated by the nonplanar, concave‐down fault interface. + A consequence is that curvature measured along the ODF is representative of a neutral + stress configuration, rather than a “bent” one. Instead, it is in the subsequent + process of “apparent unbending” that significant flexural stresses are developed + in the model footwall. The brittle strain associated with apparent unbending is + produced dominantly in extension, beneath the OCC, consistent with earthquake clustering + observed in the Trans‐Atlantic Geotraverse at the Mid‐Atlantic Ridge. +description: This model was developed in order to study the rotation of footwall rocks + beneath oceanic detachment faults (ODFs). It showed that solid-block rotation dominates + beneath a concave-down fault, while significant flexural stresses form later during + "apparent unbending," causing both compression and extension-related brittle strain + within oceanic core complexes (OCCs). +images: + landing_image: + src: ./graphics/fig1.png + caption: Deviatoric stresses and vorticity in reference model. + graphic_abstract: + src: ./graphics/fig4.png + caption: Schematic showing the stress state that would be generated assuming elastic + constitutive response of the ODF footwall (top). Bottom shows the strain-rate + due to "advective" component of the curvature rate. + model_setup: + src: ./graphics/initialconds.png + caption: Initial conditions, showing mesh refinement. +animation: + src: ./graphics/animation.mp4 + caption: Animation showing alternative model (see paper for detail). Colormap shows vorticity/rotation rate. Velocity vectors are shown in the hangingwall reference frame. Dark regions show the acccumulation of plastic strain. +model_setup_info: + url: '' + summary: The domain is $400 \; \mathrm{km}$ wide and $100 \; \mathrm{km}$ deep, + and includes five levels of mesh refinement, as shown in the figure. The model + is initialised with a symmetric temperature structure, defined by a transient + 1-D cooling profile, with an age of $0.5 \; \mathrm{Myr}$ in the center of the + domain. The thermal profile ages outwardly in proportion to the applied spreading + rate of $2 \; \mathrm{cm\,{yr}^{-1}}$ (full rate), which is representative for + slow spreading ridges. Uniform inflow at the bottom boundary balances the outward + flux of material at the side boundaries. The model has a true free surface, and + a diffusion process is applied to the surface topography in order to counteract + strong mesh deformation. A simplification here is that the effect of the water + column is ignored, i.e. the detachment system is modeled as sub-aerial. There + is no compositional differentiation in the model (i.e. no crust/mantle) and all + parts of the domain are subject to the same constitutive model. The constitutive + model incorporates viscous (dislocation creep), elastic and plastic (pseudo-brittle) + deformation mechanisms, hereafter referred to as visco-elastic plastic (VEP) rheology, + following the approach of Moresi et al. (2003). The advection-diffusion equation + included an anomalously- high diffusivity $(3 \times {10}^{-6} \; \mathrm{m^2 + \, s^{-1}})$ which is intended to model the near axis cooling effect of hydrothermal + circulation (cf. Lavier and Buck, 2002). As implemented here, the higher diffusivity + applies throughout the domain, rather than being localized at the ridge (as in + Lavier and Buck, 2002). The parameters chosen here result in $\sim 10 \; \mathrm{km}$ + lithosphere at the ridge axis, which is in the range identified for ODF development. + Due to the difference in diffusivity values in the initial conditions $({10}^{-6} + \; \mathrm{m^2 \, s^{-1}})$, and temperature evolution equation $(3 \times {10}^{-6})$, + the thermal structure is not in steady state and some cooling of the off-axis + lithosphere occurs. +model_files: + url: '' + notes: ASPECT Input files for model. Input file has been updated for compatibility + with more recent ASPECT versions. Input file tested on ASPECT version 2.6.0-pre + (fix_stresses_elasticity, 621dd61f2), using deal.II 9.4.2. + file_tree: '' + existing_identifier: https://github.com/dansand/odf_paper + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/sandiford-2021-detachment/catalog.html + include: true +dataset: + url: '' + notes: 'Data directory contains output data for 2 simulations stored in the following + directories: ref_model_hires, alt_model_hires. Top level contains typical ASPECT + output files, including log.txt and restart files. Topography and mesh variables + were output at 100 Kyr intervals. Model end time is 5 Myr. Main output data consists + of of plain text files representing model topography (e.g. topography.00000), + vtu files (in the ./solution sub-directory) representing model output fields (e.g. + solution-00000.0000.vtu). At each output step, there are 16 vtu files written. + These can be opened with Paraview using the solution.pvd file in the top level.' + existing_identifier: '' + nci_file_path: + https://thredds.nci.org.au/thredds/catalog/nm08/MATE/sandiford-2021-detachment/catalog.html + include: true +metadataFile: ro-crate-metadata.json +--- diff --git a/src/pages/models/test-2024-build2/licence.txt b/src/pages/models/test-2024-build2/licence.txt new file mode 100644 index 0000000..da6ab6c --- /dev/null +++ b/src/pages/models/test-2024-build2/licence.txt @@ -0,0 +1,396 @@ +Attribution 4.0 International + +======================================================================= + +Creative Commons Corporation ("Creative Commons") is not a law firm and +does not provide legal services or legal advice. Distribution of +Creative Commons public licenses does not create a lawyer-client or +other relationship. Creative Commons makes its licenses and related +information available on an "as-is" basis. 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Except for the limited purpose of indicating that +material is shared under a Creative Commons public license or as +otherwise permitted by the Creative Commons policies published at +creativecommons.org/policies, Creative Commons does not authorize the +use of the trademark "Creative Commons" or any other trademark or logo +of Creative Commons without its prior written consent including, +without limitation, in connection with any unauthorized modifications +to any of its public licenses or any other arrangements, +understandings, or agreements concerning use of licensed material. For +the avoidance of doubt, this paragraph does not form part of the +public licenses. + +Creative Commons may be contacted at creativecommons.org. + diff --git a/src/pages/models/test-2024-build2/ro-crate-metadata.json b/src/pages/models/test-2024-build2/ro-crate-metadata.json new file mode 100644 index 0000000..0c003c9 --- /dev/null +++ b/src/pages/models/test-2024-build2/ro-crate-metadata.json @@ -0,0 +1,492 @@ +{ + "@context": [ + "https://www.researchobject.org/ro-crate/1.1/context.jsonld", + "https://raw.githubusercontent.com/codemeta/codemeta/master/codemeta.jsonld" + ], + "@graph": [ + { + "@id": "#datasetCreation", + "@type": "CreateAction", + "agent": { + "@id": "https://orcid.org/0000-0002-2207-6837" + }, + "description": "Running the computational model", + "endTime": "", + "instrument": [ + { + "@id": "https://doi.org/10.5281/zenodo.8200213" + }, + { + "@id": "https://doi.org/10.25914/608bfd1838db2" + } + ], + "object": { + "@id": "model_inputs" + }, + "result": { + "@id": "model_outputs" + }, + "startTime": "" + }, + { + "@id": "./", + "@type": "Dataset", + "about": { + "@id": "https://linked.data.gov.au/def/anzsrc-for/2020/370401" + }, + "abstract": "Seafloor spreading at slow rates can be accommodated on large\u2010offset oceanic detachment faults (ODFs), that exhume lower crustal and mantle rocks in footwall domes termed oceanic core complexes (OCCs). Footwall rocks experience large rotation during exhumation, yet important aspects of the kinematics\u2014particularly the relative roles of solid\u2010block rotation and flexure\u2014are not clearly understood. Using a high\u2010resolution numerical model, we explore the exhumation kinematics in the footwall beneath an emergent ODF/OCC. A key feature of the models is that footwall motion is dominated by solid\u2010block rotation, accommodated by the nonplanar, concave\u2010down fault interface. A consequence is that curvature measured along the ODF is representative of a neutral stress configuration, rather than a \u201cbent\u201d one. Instead, it is in the subsequent process of \u201capparent unbending\u201d that significant flexural stresses are developed in the model footwall. The brittle strain associated with apparent unbending is produced dominantly in extension, beneath the OCC, consistent with earthquake clustering observed in the Trans\u2010Atlantic Geotraverse at the Mid\u2010Atlantic Ridge.", + "alternateName": "sandiford-2021-detachment-1", + "citation": { + "@id": "http://dx.doi.org/10.1029/2021gc009681" + }, + "contributor": "", + "creativeWorkStatus": "", + "creator": [ + { + "@id": "http://orcid.org/0000-0002-2207-6837" + }, + { + "@id": "http://orcid.org/0000-0003-4985-1810" + }, + { + "@id": "http://orcid.org/0000-0002-9481-1749" + }, + { + "@id": "http://orcid.org/0000-0002-5697-7203" + }, + { + "@id": "http://orcid.org/0000-0002-3170-3935" + } + ], + "datePublished": "2024-05-17T01:55:42.000Z", + "description": "This model was developed in order to study the rotation of footwall rocks beneath oceanic detachment faults (ODFs). It showed that solid-block rotation dominates beneath a concave-down fault, while significant flexural stresses form later during \"apparent unbending,\" causing both compression and extension-related brittle strain within oceanic core complexes (OCCs).", + "funder": [ + { + "@id": "https://ror.org/05mmh0f86" + }, + { + "@id": "https://www.helmholtz.de/" + } + ], + "hasPart": [ + { + "@id": "model_inputs" + }, + { + "@id": "model_outputs" + }, + { + "@id": "website_material" + }, + { + "@id": "metadata_trail" + }, + { + "@id": "#datasetCreation" + } + ], + "identifier": [ + "https://doi.org/10.25914/10.25914/r3ya-bg54" + ], + "isBasedOn": [], + "isPartOf": "http://dx.doi.org/10.25914/yrzp-g882", + "keywords": [ + "tectonics", + "faulting", + "detachment faults" + ], + "license": "https://creativecommons.org/licenses/by/4.0/legalcode", + "name": "Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid\u2010Block Rotation and Apparent Unbending", + "publisher": [ + { + "@id": "https://ror.org/04s1m4564" + }, + { + "@id": "https://ror.org/04yx6dh41" + } + ], + "spatialCoverage": "", + "temporalCoverage": "", + "url": [ + "https://mate.science/models/sandiford-2021-detachment-1/", + "https://github.com/ModelAtlasofTheEarth/sandiford-2021-detachment-1/" + ], + "version": "", + "funding": [ + { + "@id": "_:b0" + }, + { + "@id": "_:b1" + } + ], + "creditText": [ + "Sandiford, D., Brune, S., Glerum, A., Naliboff, J., & Whittaker, J. (2024). Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid\u2010Block Rotation and Apparent Unbending [Data set]. AuScope, National Computational Infrastructure. https://doi.org/r3ya-bg54" + ] + }, + { + "@id": "_:b0", + "@type": "Grant", + "funder": { + "@id": "https://ror.org/05mmh0f86" + }, + "identifier": "DP180102280" + }, + { + "@id": "_:b1", + "@type": "Grant", + "funder": { + "@id": "https://www.helmholtz.de/" + }, + "identifier": "VH-NG-1132" + }, + { + "@id": "_:b2", + "@type": "PropertyValue", + "propertyID": "URL", + "value": "https://zenodo.org/record/8200213" + }, + { + "@id": "_:b3", + "@type": "Organization", + "name": "datacite" + }, + { + "@id": "_:b4", + "@type": "Organization", + "name": "NCI Australia" + }, + { + "@id": "http://dx.doi.org/10.1029/2021gc009681", + "@type": "ScholarlyArticle", + "abstract": "Seafloor spreading at slow rates can be accommodated on large\u2010offset oceanic detachment faults (ODFs), that exhume lower crustal and mantle rocks in footwall domes termed oceanic core complexes (OCCs). Footwall rocks experience large rotation during exhumation, yet important aspects of the kinematics\u2014particularly the relative roles of solid\u2010block rotation and flexure\u2014are not clearly understood. Using a high\u2010resolution numerical model, we explore the exhumation kinematics in the footwall beneath an emergent ODF/OCC. A key feature of the models is that footwall motion is dominated by solid\u2010block rotation, accommodated by the nonplanar, concave\u2010down fault interface. A consequence is that curvature measured along the ODF is representative of a neutral stress configuration, rather than a \u201cbent\u201d one. Instead, it is in the subsequent process of \u201capparent unbending\u201d that significant flexural stresses are developed in the model footwall. The brittle strain associated with apparent unbending is produced dominantly in extension, beneath the OCC, consistent with earthquake clustering observed in the Trans\u2010Atlantic Geotraverse at the Mid\u2010Atlantic Ridge.", + "author": [ + { + "@id": "http://orcid.org/0000-0002-2207-6837" + }, + { + "@id": "http://orcid.org/0000-0003-4985-1810" + }, + { + "@id": "http://orcid.org/0000-0002-9481-1749" + }, + { + "@id": "http://orcid.org/0000-0002-5697-7203" + }, + { + "@id": "http://orcid.org/0000-0002-3170-3935" + } + ], + "identifier": "10.1029/2021GC009681", + "name": "Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid\u2010Block Rotation and Apparent Unbending" + }, + { + "@id": "http://orcid.org/0000-0002-2207-6837", + "@type": "Person", + "familyName": "Sandiford", + "givenName": "Dan" + }, + { + "@id": "http://orcid.org/0000-0002-3170-3935", + "@type": "Person", + "familyName": "Whittaker", + "givenName": "Joanne M." + }, + { + "@id": 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Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid‐Block Rotation and Apparent Unbending

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Kinematics of Footwall Exhumation at Oceanic Detachment faults: Solid‐Block Rotation and Apparent Unbending

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