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biodavidjmbiodavidjm
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Merge pull request #86 from MoTrPAC/feat/preemptible
Add option to run on pre-emptible VMs
2 parents b6ca511 + 82d5fb5 commit efeff7e

17 files changed

+182
-55
lines changed

‎inputs/templates/msgfplus/config-msgfplus-ac-lf.json

+7-1
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@@ -43,5 +43,11 @@
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"proteomics_msgfplus.wrapper_disk": 80,
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"proteomics_msgfplus.wrapper_docker": "docker-repository/plexedpiper:v0.4.1",
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"proteomics_msgfplus.wrapper_ncpu": 8,
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"proteomics_msgfplus.wrapper_ramGB": 60
46+
"proteomics_msgfplus.wrapper_ramGB": 60,
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"proteomics_msgfplus.masic_preemptible": 2,
48+
"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
50+
"proteomics_msgfplus.phrp_preemptible": 2,
51+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ac-tmt11.json

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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
50+
"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ac-tmt16.json

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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
50+
"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
53+
"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ac-tmt18.json

+7-1
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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
50+
"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
53+
"proteomics_msgfplus.phrp_preemptible": 2,
54+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ph-lf.json

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@@ -43,5 +43,11 @@
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"proteomics_msgfplus.wrapper_disk": 80,
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"proteomics_msgfplus.wrapper_docker": "docker-repository/plexedpiper:v0.4.1",
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"proteomics_msgfplus.wrapper_ncpu": 8,
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"proteomics_msgfplus.wrapper_ramGB": 60
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"proteomics_msgfplus.wrapper_ramGB": 60,
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"proteomics_msgfplus.masic_preemptible": 2,
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"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
50+
"proteomics_msgfplus.phrp_preemptible": 2,
51+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ph-tmt11.json

+7-1
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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
50+
"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
53+
"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ph-tmt16.json

+7-1
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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
50+
"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
54+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ph-tmt18.json

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@@ -46,5 +46,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
49+
"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
51+
"proteomics_msgfplus.msconvert_preemptible": 2,
52+
"proteomics_msgfplus.msgf_preemptible": 2,
53+
"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-pr-lf.json

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@@ -35,5 +35,11 @@
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"proteomics_msgfplus.wrapper_disk": 80,
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"proteomics_msgfplus.wrapper_docker": "docker-repository/plexedpiper:v0.4.1",
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"proteomics_msgfplus.wrapper_ncpu": 8,
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"proteomics_msgfplus.wrapper_ramGB": 60
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"proteomics_msgfplus.wrapper_ramGB": 60,
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"proteomics_msgfplus.masic_preemptible": 2,
40+
"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
43+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-pr-tmt11.json

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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
45+
"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-pr-tmt16.json

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@@ -40,5 +40,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
45+
"proteomics_msgfplus.msconvert_preemptible": 2,
46+
"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
48+
"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-pr-tmt18.json

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@@ -40,5 +40,11 @@
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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
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"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}

‎inputs/templates/msgfplus/config-msgfplus-ub-lf.json

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@@ -43,7 +43,11 @@
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"proteomics_msgfplus.wrapper_disk": 80,
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"proteomics_msgfplus.wrapper_docker": "docker-repository/plexedpiper:v0.4.1",
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"proteomics_msgfplus.wrapper_ncpu": 8,
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"proteomics_msgfplus.wrapper_ramGB": 60
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"proteomics_msgfplus.wrapper_ramGB": 60,
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"proteomics_msgfplus.masic_preemptible": 2,
48+
"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}
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‎inputs/templates/msgfplus/config-msgfplus-ub-tmt11.json

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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
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"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}
51-
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‎inputs/templates/msgfplus/config-msgfplus-ub-tmt16.json

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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
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"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}
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‎inputs/templates/msgfplus/config-msgfplus-ub-tmt18.json

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"proteomics_msgfplus.proteomics_experiment": "String",
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"proteomics_msgfplus.refine_prior": true,
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"proteomics_msgfplus.sequence_db_name": "String",
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"proteomics_msgfplus.unique_only": false
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"proteomics_msgfplus.unique_only": false,
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"proteomics_msgfplus.masic_preemptible": 2,
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"proteomics_msgfplus.msconvert_preemptible": 2,
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"proteomics_msgfplus.msgf_preemptible": 2,
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"proteomics_msgfplus.phrp_preemptible": 2,
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"proteomics_msgfplus.ascore_preemptible": 2,
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"proteomics_msgfplus.wrapper_preemptible": 2
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}
51-
52-

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