DESCRIPTION

Type: Package
Package: MotrpacRatTraining6mo
Title: Analysis of the MoTrPAC endurance exercise training data in
    6-month-old rats
Version: 1.6.6
Authors@R: c(
    person("Nicole", "Gay", , "nicole.r.gay@gmail.com", role = c("cre", "aut")),
    person("David", "Amar", , "ddam.am@gmail.com", role = "aut"),
    person("Pierre", "Jean Beltran", , "pjeanbeltran@gmail.com", role = "aut"),
    person("MoTrPAC Study Group", role = c("aut", "dtc")),
    person("NIH Common Fund", role = "fnd"),
    person("National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)", role = "fnd"),
    person("National Institute of Arthritis and Musculoskeletal Diseases (NIAMS)", role = "fnd"),
    person("National Institute on Aging (NIA)", role = "fnd"),
    person("National Institute of Biomedical Imaging and Bioengineering", role = "fnd")
  )
Description: The goal of the Molecular Transducers of Physical Activity
    Consortium (MoTrPAC) is to study the molecular changes that occur
    during and after exercise and ultimately advance the understanding of
    how physical activity improves and preserves health. This package
    provides convenient analysis functions to explore the multi-tissue,
    multi-omic data generated by MoTrPAC's endurance exercise training
    study in 6-month-old rats.
License: MIT + file LICENSE
URL: https://github.com/MoTrPAC/MotrpacRatTraining6mo, https://motrpac.github.io/MotrpacRatTraining6mo/
biocViews:
Imports: 
    data.table,
    dplyr,
    edgeR,
    ggplot2,
    ggraph (>= 2.2.0),
    grid,
    igraph,
    limma,
    magrittr,
    metap,
    methods,
    purrr,
    r2r,
    RColorBrewer,
    stats,
    tibble,
    tidyr,
    utils,
    visNetwork
Suggests: 
    ashr,
    ChIPseeker,
    corrplot,
    DESeq2,
    doParallel,
    FELLA,
    foreach,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    ggrepel,
    gprofiler2,
    IHW,
    IRanges,
    KEGGREST,
    knitr,
    lmtest,
    MCL,
    MotrpacBicQC (>= 0.6.9),
    multcomp,
    parallel,
    plotrix,
    RCy3 (>= 2.23.2),
    repfdr,
    RMariaDB,
    rmarkdown,
    testthat (>= 3.0.0),
    tm,
    viridis,
    viridisLite,
    ggtree (>= 3.7.1),
    metafor,
    nloptr,
    cmapR,
    ssGSEA2 (>= 1.0.0),
    stringr,
    BiocGenerics,
    XVector,
    Biostrings
VignetteBuilder: 
    knitr
Remotes: 
    MoTrPAC/MotrpacRatTraining6moData,
    MoTrPAC/MotrpacBicQC,
    YuLab-SMU/ggtree,
    nicolerg/ssGSEA2,
    cytoscape/RCy3,
    plotrix/plotrix
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: 
    MotrpacRatTraining6moData (>= 2.0.0),
    R (>= 2.10)
LazyData: true