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Allow input directory at the end of the command and add -o flag for output file #17

@javierartero

Description

@javierartero

Is your feature request related to a problem? Please describe.
Currently, the command structure expects the input directory at the start, followed by flags. This makes it slightly complex to use in inline piped commands (e.g. with xargs or more complex shell operations).

Describe the solution you'd like
It would be nice to allow the input directory to be placed at the end of the command for better compatibility with piped or inline commands.
Additionally, adding a -o <filename> flag would improve usability and flexibility, enabling future enhancements such as outputting logs or other information to stdout.

Describe alternatives you've considered
It’s possible to achieve similar results now using xargs or shell tricks, but it’s less straightforward and less user-friendly.

Additional context
This change would break current compatibility, so it might need to be introduced in a major version release.

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