Test fails at Graph3: Construction

[bsiranosian]

Hi, I was able to compile BWISE but can't run the tests all the way through. It fails at this step:

#Graph 3: Construction... 
#Current date & time Tue Jul 17 16:25:12 2018
	/home/bsiranos/software/BWISE/bin/bcalm -max-memory 10000 -in /data/bsiranos/software/BWISE/data/testFolder/contigs_k101.fa -kmer-size 102 -abundance-min 1 -out /data/bsiranos/software/BWISE/data/testFolder/out  -nb-cores 4

[ERROR] There was a problem generating "/data/bsiranos/software/BWISE/data/testFolder/out.unitigs.fa".
[FATAL ERROR] One or several files could not be generated.
To find out why, try `Bwise --help` and/or check the logs files of the various steps of the pipeline (logs/logBloocoo, logs/logBcalm, logs/logTips, logs/logBgreat, logs/logK2000).
IT WORKS !
N50: 1
L50: 1
N80: 1
L80: 2
N90: 1
L90: 2

Here's the tail end of testFolder/logs/logBcalm. Something related to hdf5?

debug: not deleting glue files
Finding links between unitigs                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 0                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 1                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 2                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 3                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 4                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (1kmers/1extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 5                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (1kmers/1extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 6                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 1 pass 7                                   16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
step 2 (0kmers/0extremities)                    16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
gathering links from disk                       16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
Done finding links between unitigs              16:25:10     memory [current, maxRSS]: [ 173,  173] MB 
BCALM 2, git commit e9ba83c
setting storage type to hdf5
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
  #000: /home/bsiranos/software/BWISE/src/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 407 in H5Aopen(): unable to load attribute info from object header for attribute: 'version'
    major: Attribute
    minor: Unable to initialize object
  #001: /home/bsiranos/software/BWISE/src/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5Oattribute.c line 537 in H5O_attr_open_by_name(): can't locate attribute: 'version'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
  #000: /home/bsiranos/software/BWISE/src/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 677 in H5Aget_space(): not an attribute
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
  #000: /home/bsiranos/software/BWISE/src/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5S.c line 883 in H5Sget_simple_extent_dims(): not a dataspace
    major: Invalid arguments to routine
    minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.18) thread 0:
  #000: /home/bsiranos/software/BWISE/src/bcalm/gatb-core/gatb-core/thirdparty/hdf5/src/H5A.c line 634 in H5Aread(): not an attribute
    major: Invalid arguments to routine
    minor: Inappropriate type
EXCEPTION: Unable to open bank '/data/bsiranos/software/BWISE/data/testFolder/contigs_k101.fa' (if it is a list of files, perhaps some of the files inside don't exist)