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Description
BWISE has been blocked on btrim for ~10h. It has not produced the haploid assembly
OUTPUT:
python ~/BWISE26-04/BWISE/Bwise.py -x ANature_interleave.fasta -p 5 -S 5 -K 401 -H 1 -t 45 -o /media/urbe/MyADrive/ANatureAssembly26-04-18
*** This is BWISE - High order De Bruijn graph assembler ***
Binaries are in: /home/urbe/BWISE26-04/BWISE/bin
The command line was: /home/urbe/BWISE26-04/BWISE/Bwise.py -x ANature_interleave.fasta -p 5 -S 5 -K 401 -H 1 -t 45 -o /media/urbe/MyADrive/ANatureAssembly26-04-18
[Warning] /media/urbe/MyADrive/ANatureAssembly26-04-18 directory already exists, BWISE will use it.
Results will be stored in: /media/urbe/MyADrive/ANatureAssembly26-04-18
[11:14:00 26/04/2018] --> Starting Graph construction and Super Reads generation...
[...]
The file contigs_k401.fa has been produced !
/home/urbe/BWISE26-04/BWISE/bin/bgreat -Z -g dbg401.fa -u dbg401.fa -i 1000 -o 0 -t 8 -k 401 -a 15
/home/urbe/BWISE26-04/BWISE/bin/btrim -u popped_dbg.fa -k 401 -c 45 -h 8 -o crushed_dbg.faMetadata
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