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Haplo contigs not generated #14

@AntoineHo

Description

@AntoineHo

BWISE has been blocked on btrim for ~10h. It has not produced the haploid assembly
OUTPUT:

python ~/BWISE26-04/BWISE/Bwise.py -x ANature_interleave.fasta -p 5 -S 5 -K 401 -H 1 -t 45 -o /media/urbe/MyADrive/ANatureAssembly26-04-18 

*** This is BWISE - High order De Bruijn graph assembler ***

Binaries are in: /home/urbe/BWISE26-04/BWISE/bin
The command line was: /home/urbe/BWISE26-04/BWISE/Bwise.py -x ANature_interleave.fasta -p 5 -S 5 -K 401 -H 1 -t 45 -o /media/urbe/MyADrive/ANatureAssembly26-04-18
[Warning] /media/urbe/MyADrive/ANatureAssembly26-04-18 directory already exists, BWISE will use it.
Results will be stored in:  /media/urbe/MyADrive/ANatureAssembly26-04-18

[11:14:00 26/04/2018] --> Starting Graph construction and Super Reads generation...

[...]

 The file contigs_k401.fa has been produced !


	/home/urbe/BWISE26-04/BWISE/bin/bgreat  -Z -g dbg401.fa -u dbg401.fa -i 1000 -o 0 -t 8 -k 401 -a 15

	/home/urbe/BWISE26-04/BWISE/bin/btrim -u popped_dbg.fa -k 401    -c 45 -h 8 -o crushed_dbg.fa

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