fix R setup

quentinblampey · quentinblampey · commit b483215cd211 · 2024-06-03T11:21:05.000+02:00
diff --git a/README.md b/README.md
@@ -10,6 +10,8 @@
 
 Poetry can be used for development. Yet, it will not include R. To train models, use the conda setup below.
 
+At the root of the repository, run the following command line:
+
 ```sh
 poetry install --all-extras
 ```
@@ -18,7 +20,10 @@ poetry install --all-extras
 
 For some algorithms (e.g., STAGATE/SEDR), R might be needed for clustering.
 
+At the root of the repository, run the following command lines:
+
 ```sh
+conda create -n novae_benchmark python=3.10 -y
 pip install -e .
-conda install conda-forge::r-mclust
+conda install -c conda-forge r-base rpy2 r-mclust
 ```
diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -11,7 +11,6 @@ scanpy = ">=1.9.8"
 lightning = ">=2.2.1"
 torch = ">=2.2.1"
 torch-geometric = ">=2.5.2"
-rpy2 = "^3.5.16"
 
 [tool.poetry.group.dev.dependencies]
 black = ">=22.8.0"
