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umap all human
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novae_benchmark/pan_tissue_umap.py

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@@ -61,7 +61,7 @@ def compute_and_save_umap(adata: AnnData, res_path: Path):
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def main():
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# data_path = Path("/Users/quentinblampey/dev/novae/data/results/dry-wood-40")
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# res_path = Path("/Users/quentinblampey/dev/novae_benchmark/figures")
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data_path = Path("/gpfs/workdir/blampeyq/novae/data/results/still-surf-209")
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data_path = Path("/gpfs/workdir/blampeyq/novae/data/results/clean-sun-207")
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res_path = Path("/gpfs/workdir/blampeyq/novae_benchmark/figures")
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adata_full = sc.read_h5ad(data_path / "adata_conc.h5ad")

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