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Cannot install mdws using micromamba #27

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benoistlaurent opened this issue Sep 4, 2023 · 2 comments
Open

Cannot install mdws using micromamba #27

benoistlaurent opened this issue Sep 4, 2023 · 2 comments

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@benoistlaurent
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After installing micromamba, trying to create mdws's environment fails

❯❯  micromamba env create -f binder/environment.yml
pkgs/main/noarch (check zst)                        Checked  0.1s
pkgs/main/osx-64 (check zst)                        Checked  0.1s
pkgs/r/noarch (check zst)                           Checked  0.2s
bioconda/noarch (check zst)                         Checked  0.1s
pkgs/r/osx-64 (check zst)                           Checked  0.2s
bioconda/osx-64 (check zst)                         Checked  0.3s
nodefaults/osx-64 (check zst)                       Checked  0.5s
nodefaults/noarch (check zst)                       Checked  0.5s
pkgs/main/noarch                                   696.6kB @   2.2MB/s  0.4s
pkgs/r/osx-64                                      820.9kB @   2.4MB/s  0.4s
pkgs/r/noarch                                        1.3MB @   3.2MB/s  0.5s
pkgs/main/osx-64                                     5.0MB @  10.0MB/s  0.5s
nodefaults/osx-64                                  124.0 B @ 114.0 B/s  0.6s
bioconda/osx-64                                      4.2MB @   3.1MB/s  1.5s
nodefaults/noarch                                  115.0 B @  70.0 B/s  0.6s
conda-forge/noarch                                  12.3MB @   6.6MB/s  1.4s
bioconda/noarch                                      4.7MB @   2.5MB/s  1.5s
conda-forge/osx-64                                  26.9MB @  11.9MB/s  1.8s
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
[...]
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
error    libmamba Could not solve for environment specs
    The following packages are incompatible
    ├─ mdanalysis is installable with the potential options
    │  ├─ mdanalysis [0.16.2|0.17.0|...|0.20.1] would require
    │  │  └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
    │  ├─ mdanalysis [0.17.0|0.18.0] would require
    │  │  └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
    │  ├─ mdanalysis 0.17.0 would require
    │  │  └─ python 3.6*  with the potential options
    │  │     ├─ python [3.6.0|3.6.1|...|3.6.9], which can be installed;
    │  │     └─ python [3.6.0a3|3.6.0a4|...|3.6.0rc1] conflicts with any installable versions previously reported;
    │  ├─ mdanalysis [0.18.0|0.19.0|...|2.0.0] would require
    │  │  └─ python >=3.6,<3.7.0a0 , which can be installed;
    │  ├─ mdanalysis [0.19.2|0.20.0|...|2.1.0] would require
    │  │  └─ python >=3.7,<3.8.0a0 , which can be installed;
    │  ├─ mdanalysis [0.20.1|1.0.0|...|2.3.0] would require
    │  │  └─ python >=3.8,<3.9.0a0 , which can be installed;
    │  ├─ mdanalysis 1.0.0 would require
    │  │  └─ python_abi 3.6 *_pypy36_pp73, which requires
    │  │     └─ python 3.6.* *_73_pypy, which can be installed;
    │  ├─ mdanalysis 1.0.0 would require
    │  │  └─ python_abi 3.7 *_pypy37_pp73, which requires
    │  │     └─ python 3.7.* *_73_pypy, which can be installed;
    │  ├─ mdanalysis [1.0.0|2.0.0|2.1.0|2.2.0|2.3.0] would require
    │  │  └─ mmtf-python [ |>=1.0.0 ] with the potential options
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 2.7* , which can be installed;
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 3.4* , which conflicts with any installable versions previously reported;
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 3.5* , which can be installed;
    │  │     └─ mmtf-python [1.0.10|1.0.4|...|1.1.3] conflicts with any installable versions previously reported;
    │  ├─ mdanalysis [2.1.0|2.2.0|2.3.0] would require
    │  │  └─ python >=3.10,<3.11.0a0 , which can be installed;
    │  └─ mdanalysis [2.4.1|2.4.2|2.4.3|2.5.0|2.6.1] would require
    │     └─ biopython >=1.80 , which conflicts with any installable versions previously reported;
    ├─ pooch >=1.6  is not installable because it conflicts with any installable versions previously reported;
    └─ python 3.9**  is not installable because it conflicts with any installable versions previously reported.
critical libmamba Could not solve for environment specs
@benoistlaurent
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benoistlaurent commented Sep 7, 2023 •
edited
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Same problem with mamba 1.5.1

❯❯  ~/Downloads/bin/micromamba env create -f binder/environment.yml
pkgs/main/noarch (check zst)                        Checked  0.1s
pkgs/r/noarch (check zst)                           Checked  0.2s
pkgs/main/osx-64 (check zst)                        Checked  0.2s
bioconda/osx-64 (check zst)                         Checked  0.3s
pkgs/r/osx-64 (check zst)                           Checked  0.3s
bioconda/noarch (check zst)                         Checked  0.2s
nodefaults/osx-64 (check zst)                       Checked  0.5s
nodefaults/noarch (check zst)                       Checked  0.5s
pkgs/main/noarch                                   696.9kB @   3.8MB/s  0.2s
pkgs/main/osx-64                                     5.1MB @  12.0MB/s  0.5s
pkgs/r/osx-64                                      820.9kB @   1.8MB/s  0.5s
pkgs/r/noarch                                        1.3MB @   2.8MB/s  0.5s
nodefaults/osx-64                                  124.0 B @ 116.0 B/s  0.6s
nodefaults/noarch                                  115.0 B @  80.0 B/s  0.4s
bioconda/osx-64                                      4.2MB @   2.9MB/s  1.6s
conda-forge/noarch                                  12.3MB @   7.5MB/s  1.2s
bioconda/noarch                                      4.7MB @   2.6MB/s  1.6s
conda-forge/osx-64                                  26.9MB @  11.8MB/s  1.8s
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
[...]
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
warning  libmamba Problem type not implemented SOLVER_RULE_STRICT_REPO_PRIORITY
error    libmamba Could not solve for environment specs
    The following packages are incompatible
    ├─ mdanalysis is installable with the potential options
    │  ├─ mdanalysis [0.16.2|0.17.0|...|0.20.1] would require
    │  │  └─ python [2.7* |>=2.7,<2.8.0a0 ], which can be installed;
    │  ├─ mdanalysis [0.17.0|0.18.0] would require
    │  │  └─ python [3.5* |>=3.5,<3.6.0a0 ], which can be installed;
    │  ├─ mdanalysis 0.17.0 would require
    │  │  └─ python 3.6*  with the potential options
    │  │     ├─ python [3.6.0|3.6.1|...|3.6.9], which can be installed;
    │  │     └─ python [3.6.0a3|3.6.0a4|...|3.6.0rc1] conflicts with any installable versions previously reported;
    │  ├─ mdanalysis [0.18.0|0.19.0|...|2.0.0] would require
    │  │  └─ python >=3.6,<3.7.0a0 , which can be installed;
    │  ├─ mdanalysis [0.19.2|0.20.0|...|2.1.0] would require
    │  │  └─ python >=3.7,<3.8.0a0 , which can be installed;
    │  ├─ mdanalysis [0.20.1|1.0.0|...|2.3.0] would require
    │  │  └─ python >=3.8,<3.9.0a0 , which can be installed;
    │  ├─ mdanalysis 1.0.0 would require
    │  │  └─ python_abi 3.6 *_pypy36_pp73, which requires
    │  │     └─ python 3.6.* *_73_pypy, which can be installed;
    │  ├─ mdanalysis 1.0.0 would require
    │  │  └─ python_abi 3.7 *_pypy37_pp73, which requires
    │  │     └─ python 3.7.* *_73_pypy, which can be installed;
    │  ├─ mdanalysis [1.0.0|2.0.0|2.1.0|2.2.0|2.3.0] would require
    │  │  └─ mmtf-python [ |>=1.0.0 ] with the potential options
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 2.7* , which can be installed;
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 3.4* , which conflicts with any installable versions previously reported;
    │  │     ├─ mmtf-python 1.0.2 would require
    │  │     │  └─ python 3.5* , which can be installed;
    │  │     └─ mmtf-python [1.0.10|1.0.4|...|1.1.3] conflicts with any installable versions previously reported;
    │  ├─ mdanalysis [2.1.0|2.2.0|2.3.0] would require
    │  │  └─ python >=3.10,<3.11.0a0 , which can be installed;
    │  └─ mdanalysis [2.4.1|2.4.2|2.4.3|2.5.0|2.6.1] would require
    │     └─ biopython >=1.80 , which conflicts with any installable versions previously reported;
    ├─ pooch >=1.6  is not installable because it conflicts with any installable versions previously reported;
    └─ python 3.9**  is not installable because it conflicts with any installable versions previously reported.
critical libmamba Could not solve for environment specs

@pierrepo
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pierrepo commented Sep 7, 2023

Sorry....

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@benoistlaurent @pierrepo