Where to find the "data_lidc.hdf5"?

[saraao]

Hi, thank you for sharing your code and great work! Just wonder where can we download the file "data_lidc.hdf5", only find the "data_lidc.pickle" but not .hdf5 on Stefan Knegt's gihub page. Is there and way we can convert the .pickle to .hdf5? Thank you!

[LarsDoorenbos]

Thank you for your interest in our work.

The LIDCv2 data can now be found here (from the Hierarchical Probabilistic U-Net
repo), see also this issue. Apparently, it is no longer a .hdf5 file, so you would have to adapt the dataloading slightly, similar to that in lidc_orig.py.

[saraao]

Thank you for getting back to me so fast!

[ZhouCX117]

Hi, thanks for your excellent work. Could you please share the processed "data_lidc.hdf5"? Thanks a lot!

[ZhouCX117]

@LarsDoorenbos By the way, where can I find the derivation process？ Looking forward to your answer~

[LarsDoorenbos]

We now uploaded the .hdf5 file to here.

For your second question, which derivation process do you mean?

[ZhouCX117]

Hi, thanks for your reply @LarsDoorenbos . I want to know the derivation process for eq.7.

[LarsDoorenbos]

The categorical diffusion formulation comes from this paper, and our eqs. 6 & 7 come from eq. 13 there.

[ZhouCX117]

Thanks for your quick reply! Have a good day!

[ZhouCX117]

@LarsDoorenbos Hi, it is me again. When I train on my dataset, the result is not nice. So could you please release your trained model? Thanks a lot!

[LarsDoorenbos]

I put one of our models from LIDCv1 along with the parameter file needed for evaluating GED16 here