Hi, I tried using DevKidCC but I'm always coming across this error:
organoid <- DKCC(organoid)
Normalizing layer: counts
Performing log-normalization
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
● Matching reference with new dataset...
─ 9977 features present in reference loadings
─ 7520 features shared between reference and new dataset
─ 75.37% of features in the reference are present in new dataset
Error in GetAssayData():
! assay must be one of "RNA", not "data".
Run rlang::last_trace() to see where the error occurred.
rlang::last_trace()
<error/rlang_error>
Error in GetAssayData():
! assay must be one of "RNA", not "data".
Backtrace:
▆
- └─DevKidCC::DKCC(organoid)
- └─scPred::scPredict(...)
-
└─scPred::project_query(...)
-
├─SeuratObject::GetAssayData(new, "data")
-
└─SeuratObject:::GetAssayData.Seurat(assay = "data")
Run rlang::last_trace(drop = FALSE) to see 4 hidden frames.
rlang::last_trace(drop = FALSE)
<error/rlang_error>
Error in GetAssayData():
! assay must be one of "RNA", not "data".
Backtrace:
▆
- ├─DevKidCC::DKCC(organoid)
- │ └─scPred::scPredict(...)
- │ └─scPred::project_query(...)
- │ ├─SeuratObject::GetAssayData(new, "data")
- │ └─SeuratObject:::GetAssayData.Seurat(assay = "data")
- │ └─rlang::arg_match(arg = assay, values = Assays(object = object))
- │ └─rlang::arg_match0(arg, values, error_arg, error_call = error_call)
- └─rlang:::stop_arg_match(w, values = x, error_arg = y, error_call = z)
- └─rlang::abort(msg, call = error_call, arg = error_arg)
Wondering if you could help to get this working?
Hi, I tried using DevKidCC but I'm always coming across this error:
Backtrace:
▆
Run rlang::last_trace(drop = FALSE) to see 4 hidden frames.
Backtrace:
▆
Wondering if you could help to get this working?