- R, Shiny
- Data class: Bioconductor-SingleCellExperiment
- Feature selection: JCVenterInstitute/NSForest (suggested)
install.packages("devtools")
devtools::install_github("JCVenterInstitute/FRmatch")To start with a tutorial.
To start with a demo Shiny App:
FRmatch::runShiny()This repo is going through CI/CD (continuous integration and continuous delivery) code development. Stable releases are managed in Releases.
Please report issues using the issue traker.
Zhang et al. 2022. Cell type matching in single-cell RNA-sequencing data using FR-Match. Scientific Reports, https://doi.org/10.1038/s41598-022-14192-z.
Zhang et al. 2020. FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test. Briefings in Bioinformatics, https://doi.org/10.1093/bib/bbaa339.
- Yun (Renee) Zhang [email protected]
- Richard Scheuermann [email protected]
This project is licensed under the MIT License.
- Allen Institute for Brain Science
- Chan Zuckerberg Initiative (DAF 2018–182730)
- The NIH BRAIN Initiative (1RF1MH123220)