NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(.DollarNames,PointFrame)
S3method(.DollarNames,ShapeFrame)
S3method(.DollarNames,SpatialData)
S3method(.DollarNames,Zattrs)
S3method(filter,PointFrame)
S3method(select,PointFrame)
export(.SpatialData)
export(ImageArray)
export(LabelArray)
export(PointFrame)
export(ShapeFrame)
export(SpatialData)
export(Zattrs)
export(do_tx_to_ext)
export(getZarrArrayPath)
export(mask)
export(plotCoordGraph)
export(readImage)
export(readLabel)
export(readPoint)
export(readShape)
export(readSpatialData)
export(readTable)
exportClasses(SpatialData)
exportMethods("$")
exportMethods("[")
exportMethods("[[")
exportMethods("[[<-")
exportMethods("image<-")
exportMethods("images<-")
exportMethods("label<-")
exportMethods("labels<-")
exportMethods("point<-")
exportMethods("points<-")
exportMethods("shape<-")
exportMethods("shapes<-")
exportMethods("table<-")
exportMethods("tables<-")
exportMethods(CTdata)
exportMethods(CTgraph)
exportMethods(CTname)
exportMethods(CTpath)
exportMethods(CTtype)
exportMethods(addCT)
exportMethods(as.data.frame)
exportMethods(axes)
exportMethods(channels)
exportMethods(colnames)
exportMethods(data)
exportMethods(dim)
exportMethods(element)
exportMethods(getTable)
exportMethods(hasTable)
exportMethods(image)
exportMethods(imageNames)
exportMethods(images)
exportMethods(label)
exportMethods(labelNames)
exportMethods(labels)
exportMethods(layer)
exportMethods(length)
exportMethods(mask)
exportMethods(meta)
exportMethods(names)
exportMethods(point)
exportMethods(pointNames)
exportMethods(points)
exportMethods(query)
exportMethods(rmvCT)
exportMethods(rotate)
exportMethods(rownames)
exportMethods(scale)
exportMethods(setTable)
exportMethods(shape)
exportMethods(shapeNames)
exportMethods(shapes)
exportMethods(table)
exportMethods(tableNames)
exportMethods(tables)
exportMethods(translation)
exportMethods(valTable)
import(geoarrow)
importClassesFrom(S4Arrays,Array)
importClassesFrom(S4Vectors,DFrame)
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocGenerics,colnames)
importFrom(BiocGenerics,rownames)
importFrom(DelayedArray,realize)
importFrom(Matrix,rowSums)
importFrom(Matrix,sparseVector)
importFrom(Matrix,t)
importFrom(RBGL,sp.between)
importFrom(Rarr,ZarrArray)
importFrom(S4Arrays,as.array.Array)
importFrom(S4Vectors,"metadata<-")
importFrom(S4Vectors,coolcat)
importFrom(S4Vectors,isSequence)
importFrom(S4Vectors,make_zero_col_DFrame)
importFrom(S4Vectors,metadata)
importFrom(S4Vectors,setValidity2)
importFrom(SingleCellExperiment,"int_colData<-")
importFrom(SingleCellExperiment,"int_metadata<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,int_colData)
importFrom(SingleCellExperiment,int_metadata)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(arrow,open_dataset)
importFrom(basilisk,BasiliskEnvironment)
importFrom(basilisk,basiliskRun)
importFrom(basilisk,basiliskStart)
importFrom(basilisk,basiliskStop)
importFrom(dplyr,all_of)
importFrom(dplyr,collect)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
importFrom(dplyr,pull)
importFrom(dplyr,select)
importFrom(graph,"edgeData<-")
importFrom(graph,"edgeDataDefaults<-")
importFrom(graph,"nodeData<-")
importFrom(graph,"nodeDataDefaults<-")
importFrom(graph,"nodes<-")
importFrom(graph,addEdge)
importFrom(graph,addNode)
importFrom(graph,edgeData)
importFrom(graph,graph.par)
importFrom(graph,graphAM)
importFrom(graph,nodeData)
importFrom(graph,nodes)
importFrom(jsonlite,fromJSON)
importFrom(methods,as)
importFrom(methods,callNextMethod)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClassUnion)
importFrom(methods,setReplaceMethod)
importFrom(methods,slot)
importFrom(reticulate,import)
importFrom(sf,"st_geometry<-")
importFrom(sf,st_as_sf)
importFrom(sf,st_coordinates)
importFrom(sf,st_distance)
importFrom(sf,st_geometry)
importFrom(sf,st_geometry_type)
importFrom(sf,st_point)
importFrom(sf,st_sfc)
importFrom(utils,.DollarNames)
importFrom(utils,head)
importFrom(utils,tail)
importFrom(zellkonverter,AnnData2SCE)