DESCRIPTION

Package: SpatialData
Title: Representation of Python's SpatialData in R
Depends: R (>= 4.4)
Version: 0.99.22
Description: Interface to Python's 'SpatialData', currently including:
    reticulate-based use of 'spatialdata-io' for reading of manufracturer
    data and writing to .zarr, on-disk representation of images/labels as
    'ZarrArray's ('Rarr') and shapes/points as 'arrow' objects, and method 
    drafts for visualization and coordinate system handling.
Authors@R: c(
	person("Helena L.", "Crowell", 
	    role=c("aut", "cre"),
	    email="helena@crowell.eu", 
	    comment=c(ORCID="0000-0002-4801-1767")),
    person("Vince", "Carey",
        role=c("aut"),
        email="stvjc@channing.harvard.edu",
        comment=c(ORCID="0000-0003-4046-0063")),
    person("Yixing E.", "Dong",
        role=c("aut"),
        email="estelladong729@gmail.com",
        comment=c(ORCID="0009-0003-5115-5686")),
    person("Artür", "Manukyan",
        role=c("aut"),
        email="artur-man@hotmail.com",
        comment=c(ORCID="0000-0002-0441-9517")),
    person("Dario", "Righelli", 
        role=c("aut"), 
        email="dario.righelli@gmail.com",
        comment=c(ORCID="0000-0003-1504-3583")),
    person("Louise", "Deconinck",
        role=c("aut"),
        email="louise.deconinck@gmail.com",
        comment=c(ORCID="0000-0001-8100-6823")))
Imports:
    arrow,
    basilisk,
    BiocGenerics,
    DelayedArray,
    dplyr,
    geoarrow,
    graph,
    jsonlite,
    Matrix,
    methods,
    Rarr,
    RBGL,
    reticulate,
    sf,
    S4Arrays,
    S4Vectors,
    SingleCellExperiment,
    SummarizedExperiment,
    zellkonverter
Suggests:
    BiocStyle,
    ggnewscale,
    knitr,
    magick,
    paws,
    Rgraphviz,
    SpatialData.data,
    SpatialData.plot,
    testthat,
    DT
Enhances:
    patchwork,
    anndataR,
    pizzarr
Remotes:
    keller-mark/pizzarr,
    keller-mark/anndataR@spatialdata,
    HelenaLC/SpatialData.plot,
    HelenaLC/SpatialData.data
biocViews: 
    DataImport, 
    DataRepresentation, 
    Infrastructure, 
    ImmunoOncology, 
    GeneExpression, 
    Transcriptomics, 
    SingleCell,
    Spatial
License: Artistic-2.0
RoxygenNote: 7.3.2
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/HelenaLC/SpatialData
BugReports: https://github.com/HelenaLC/SpatialData/issues