Grow-colonies.cece

<?xml version="1.0" encoding="UTF-8" standalone="yes" ?>
<!-- Simulation definition -->
<simulation world-size="300um 300um" dt="60s" iterations="10000">

    <plugin name="cell" />
    <plugin name="python" />

    <!-- Specify yeast cell growth rate -->
    <object class="cell.Yeast" growth-rate="0.0001/s" volume="10um3" position="30um 0" volume-max="80um3">
        <molecule name="GFP" amount="100000" />
    </object>

    <object class="cell.Yeast" growth-rate="0.0001/s" volume="10um3" position="-30um 0" volume-max="80um3" >
        <molecule name="RFP" amount="100000"/>
    </object>

    <!-- Prints information about simulation -->
    <module name="printSimulation" language="python">
<![CDATA[
def update(dt, simulation):
    print "Iteration:", simulation.iteration, "/", simulation.iterations
    print "Object count:", simulation.objectCount
    print "Size: [", simulation.worldSize.width, ",", simulation.worldSize.height, "]"
]]>
    </module>
</simulation>