DOC: Fix broken URLs (#3875)

Co-authored-by: Dongdong Tian <[email protected]>

Author: yvonnefroehlich

Diff for: .github/workflows/check-links.yml

@@ -50,11 +50,14 @@ jobs:
           --exclude "^https://docs.generic-mapping-tools.org/6.[0-9]?/%s$"
           --exclude "^https://docs.generic-mapping-tools.org/6.[0-9]?/%3Cmodule-name%3E.html$"
           --exclude "^https://doi.org"
+          --exclude "^https://github.com/%7Brepository%7D"
           --exclude "^https://github.com/GenericMappingTools/gmt/releases/tag/X.Y.Z$"
           --exclude "^https://github.com/GenericMappingTools/pygmt/edit"
           --exclude "^https://github.com/GenericMappingTools/pygmt/issues/new"
           --exclude "^https://github.com/GenericMappingTools/pygmt/pull/[0-9]*$"
           --exclude "^https://github.com/GenericMappingTools/pygmt/issues/[0-9]*$"
+          --exclude "^https://github.com/GenericMappingTools/pygmt/releases/download/%7B%7Bpath%7D%7D/pygmt-docs.pdf"
+          --exclude "^https://github.com/GenericMappingTools/pygmt/releases/download/%7B%7Bpath%7D%7D/pygmt-docs.zip"
           --exclude "^https://github.com/GenericMappingTools/pygmt/releases/tag/%7B%7Bpath%7D%7D"
           --exclude "^https://hackmd.io/@pygmt"
           --exclude "^https://test.pypi.org/simple/"
@@ -63,6 +66,8 @@ jobs:
           --exclude "^https://www.pygmt.org/%7B%7Bpath%7D%7D"
           --exclude "^https://www.researchgate.net/"
           --exclude "^https://zenodo.org/badge/DOI/"
+          --exclude-path "repository/doc/**/*.rst"
+          --exclude-path "repository/doc/**/*.md"
           --verbose
           "repository/**/*.rst"
           "repository/**/*.md"

Diff for: README.md

@@ -10,7 +10,7 @@
 [![Compatible Python versions](https://img.shields.io/python/required-version-toml?tomlFilePath=https%3A%2F%2Fraw.githubusercontent.com%2FGenericMappingTools%2Fpygmt%2Frefs%2Fheads%2Fmain%2Fpyproject.toml)](https://www.pygmt.org/dev/minversions.html)
 [![Digital Object Identifier for the Zenodo archive](https://zenodo.org/badge/DOI/10.5281/3781524.svg)](https://doi.org/10.5281/zenodo.3781524)
 [![Discourse forum](https://img.shields.io/discourse/status?label=forum&server=https%3A%2F%2Fforum.generic-mapping-tools.org)](https://forum.generic-mapping-tools.org)
-[![PyOpenSci](https://tinyurl.com/y22nb8up)](https://github.com/pyOpenSci/software-review/issues/43)
+[![PyOpenSci](https://tinyurl.com/y22nb8up)](https://github.com/pyOpenSci/software-submission/issues/43)
 [![Contributor Code of Conduct](https://img.shields.io/badge/Contributor%20Covenant-v2.1%20adopted-ff69b4.svg)](https://github.com/GenericMappingTools/.github/blob/main/CODE_OF_CONDUCT.md)
 [![GitHub Actions Tests status](https://github.com/GenericMappingTools/pygmt/actions/workflows/ci_tests.yaml/badge.svg)](https://github.com/GenericMappingTools/pygmt/actions/workflows/ci_tests.yaml)
 [![GitHub Actions GMT Dev Tests status](https://github.com/GenericMappingTools/pygmt/actions/workflows/ci_tests_dev.yaml/badge.svg)](https://github.com/GenericMappingTools/pygmt/actions/workflows/ci_tests_dev.yaml)

Diff for: doc/conf.py

@@ -150,7 +150,7 @@
 typehints_defaults = "comma"
 
 # Options for Sphinx-Gallery.
-# Reference: https://sphinx-gallery.readthedocs.io/en/latest/configuration.html
+# Reference: https://sphinx-gallery.github.io/stable/configuration.html
 sphinx_gallery_conf = {
     # Set paths to your examples scripts
     "examples_dirs": [