Merge branch 'main' into alias-system

Author: seisman

.github/workflows/check-links.yml

@@ -63,6 +63,7 @@ jobs:
           --exclude "^https://test.pypi.org/simple/"
           --exclude "^https://www.adobe.com/jp/print/postscript/pdfs/PLRM.pdf"
           --exclude "^https://www.generic-mapping-tools.org/remote-datasets/%s$"
+          --exclude "^https://www.gnu.org/software/libc/manual/html_node/TZ-Variable.html"
           --exclude "^https://www.pygmt.org/%7B%7Bpath%7D%7D"
           --exclude "^https://www.researchgate.net/"
           --exclude "^https://zenodo.org/badge/DOI/"

.github/workflows/ci_tests.yaml

@@ -151,7 +151,7 @@ jobs:
           GH_TOKEN: ${{ github.token }}
 
       - name: Install uv
-        uses: astral-sh/setup-uv@v6.0.1
+        uses: astral-sh/setup-uv@v6.1.0
         with:
           activate-environment: true
           python-version: ${{ matrix.python-version }}
@@ -183,7 +183,7 @@ jobs:
 
       # Upload coverage to Codecov
       - name: Upload coverage to Codecov
-        uses: codecov/[email protected].2
+        uses: codecov/[email protected].3
         if: success() || failure()
         with:
           use_oidc: true

examples/gallery/3d_plots/scatter3d.py

@@ -92,7 +92,7 @@
     zscale=1.5,
 )
 
-# Shift the plot origin in x direction temporarily and add the colorbar
+# Shift the plot origin in x-direction temporarily and add the colorbar
 with fig.shift_origin(xshift=3.1):
     fig.colorbar()
 

examples/gallery/embellishments/gmt_logo.py

@@ -12,7 +12,7 @@
 fig.basemap(region=[0, 10, 0, 2], projection="X6c", frame=True)
 
 # Add the GMT logo in the Top Right (TR) corner of the current plot, scaled up to be 3
-# centimeters wide and offset by 0.3 cm in x direction and 0.6 cm in y direction.
+# centimeters wide and offset by 0.3 cm in x-direction and 0.6 cm in y-direction.
 fig.logo(position="jTR+o0.3c/0.6c+w3c")
 
 fig.show()

examples/gallery/embellishments/legend.py

@@ -44,7 +44,7 @@
 
 # Add a legend to the plot; place it within the plot bounding box with both
 # reference ("J") and anchor ("+j") points being the Top Right (TR) corner and an
-# offset of 0.2 centimeters in x and y directions; surround the legend with a box
+# offset of 0.2 centimeters in x- and y-directions; surround the legend with a box
 fig.legend(position="JTR+jTR+o0.2c", box=True)
 
 # -----------------------------------------------------------------------------

examples/gallery/embellishments/scalebar.py

@@ -30,7 +30,7 @@
    independent) code. Choose from vertical **T**\(op), **M**\(iddle), or
    **B**\(ottom) and horizontal **L**\(eft), **C**\(entre), or **R**\(ight).
  - offset: **+o**\ *offset* or **+o**\ *xoffset*/\ *yoffset*. Give either a
-   common shift or individual shifts in x (longitude) and y (latitude)
+   common shift or individual shifts in x- (longitude) and y- (latitude)
    directions.
  - height: Use :gmt-term:`MAP_SCALE_HEIGHT` via :func:`pygmt.config`.
  - fancy style: **+f**. Get a scale bar that looks like train tracks.
@@ -77,7 +77,7 @@
 # -----------------------------------------------------------------------------
 # Bottom Right: Add a scale bar valid for a specific location
 # It is placed at BottomRight (j) using MiddleRight as anchor point (+j) with
-# an offset (+o) of 1 centimeter in both x and y directions
+# an offset (+o) of 1 centimeter in both x- and y-directions
 # It applies (+c) at -7° South, add a customized label by appending text to +l
 fig.basemap(map_scale="jBR+jMR+o1c/1c+c-7+w500k+f+u+lvalid at 7° S")
 

examples/gallery/embellishments/timestamp.py

@@ -5,7 +5,7 @@
 The :meth:`pygmt.Figure.timestamp` method can draw the GMT timestamp logo on the plot.
 The timestamp will always be shown relative to the Bottom Left (BL) corner of the plot.
 By default, the ``offset`` and ``justify`` parameters are set to ``("-54p", "-54p")``
-(x, y directions) and ``"BL"`` (Bottom Left), respectively.
+(x-, y-directions) and ``"BL"`` (Bottom Left), respectively.
 """
 
 # %%

examples/gallery/histograms/blockm.py

@@ -18,7 +18,7 @@
 
 # Set the region for the plot
 region = [130, 152.5, 32.5, 52.5]
-# Define spacing in x and y direction (150x150 arc-minute blocks)
+# Define spacing in x- and y-direction (150x150 arc-minute blocks)
 spacing = "150m"
 
 fig = pygmt.Figure()

examples/gallery/histograms/scatter_and_histograms.py

@@ -42,7 +42,7 @@
 # level for all circles to deal with overplotting.
 fig.plot(x=x, y=y, style="c0.15c", fill=fill, transparency=50)
 
-# Shift the plot origin in y direction temporarily and add top margin histogram.
+# Shift the plot origin in y-direction temporarily and add top margin histogram.
 with fig.shift_origin(yshift=height + 0.25):
     fig.histogram(
         projection=f"X{width}/3",
@@ -56,7 +56,7 @@
         series=0.2,
     )
 
-# Shift the plot origin in x direction temporarily and add right margin histogram.
+# Shift the plot origin in x-direction temporarily and add right margin histogram.
 with fig.shift_origin(xshift=width + 0.25):
     # Plot the horizontal histogram.
     fig.histogram(

examples/gallery/images/cross_section.py

@@ -38,7 +38,7 @@
 # Add a colorbar for the elevation
 fig.colorbar(
     # Place the colorbar inside the plot (lowercase "j") in the Bottom Right (BR)
-    # corner with an offset ("+o") of 0.7 centimeters and 0.3 centimeters in x or y
+    # corner with an offset ("+o") of 0.7 centimeters and 0.3 centimeters in x- or y-
     # directions, respectively; move the x label above the horizontal colorbar ("+ml")
     position="jBR+o0.7c/0.8c+h+w5c/0.3c+ml",
     # Add a box around the colobar with a fill ("+g") in "white" color and a
@@ -61,7 +61,7 @@
     x=[126, 146],
     y=[42, 40],
     text=["A", "B"],
-    offset="0c/0.2c",  # Move text 0.2 centimeters up (y direction)
+    offset="0c/0.2c",  # Move text 0.2 centimeters up (y-direction)
     font="15p",  # Use a font size of 15 points
 )