forked from djhn75/RNAEditor
-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathconfiguration.txt
More file actions
24 lines (23 loc) · 770 Bytes
/
Copy pathconfiguration.txt
File metadata and controls
24 lines (23 loc) · 770 Bytes
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
# This file is used to configure the behaviour of RNAeditor
# Standard input files
refGenome = ~/rnaEditor_annotations/human/GRCH38/Homo_sapiens.GRCh38.dna.primary_assembly.fa
gtfFile = ~/rnaEditor_annotations/human/GRCH38/Homo_sapiens.GRCh38.83.gtf
dbSNP = ~/rnaEditor_annotations/human/GRCH38/dbSNP_ensemble2.vcf
hapmap = ~/rnaEditor_annotations/human/GRCH38/HAPMAP.vcf
omni = ~/rnaEditor_annotations/human/GRCH38/1000GenomeProject.vcf
esp = ~/rnaEditor_annotations/human/GRCH38/ESP.vcf
aluRegions = ~/rnaEditor_annotations/human/GRCH38/repeats.bed
output = default
sourceDir = /usr/local/bin/
maxDiff = 0.04
seedDiff = 2
standCall = 0
standEmit = 0
edgeDistance = 3
intronDistance = 5
minPts = 5
eps = 50
paired = False
keepTemp = True
overwrite = False
threads = 5