Found during #391's code review (plans/08082026_clump-paired-report-preflight/CODE_REVIEW_B.md, out-of-scope observations): cli.rs:195 lists --output-format ubam among the flags rejected under --clump_only, and cli.rs:206 says "v1 is FASTQ in / FASTQ out only. uBAM in/out is a natural follow-up." Both predate the shipped uBAM arms and now contradict the docs site's clump-only page. User-facing --help text; two-line fix.
Found during #391's code review (
plans/08082026_clump-paired-report-preflight/CODE_REVIEW_B.md, out-of-scope observations):cli.rs:195lists--output-format ubamamong the flags rejected under--clump_only, andcli.rs:206says "v1 is FASTQ in / FASTQ out only. uBAM in/out is a natural follow-up." Both predate the shipped uBAM arms and now contradict the docs site's clump-only page. User-facing--helptext; two-line fix.