`paths` in config file is ignored

My config file:
```
requirejs.config({
    baseUrl: '/js',
    paths: {
        'jquery': '/js/deps/jquery-3.1.1.min'
    }
});
requirejs(['src/main']);
```

example.js
```
define([
    'jquery' // <-- appears red, broken.
], function ($) {

});
```
