Update (03.05.2021)

Author: MichaelStritt

docs/Functions.md

@@ -2519,6 +2519,16 @@ Philips 3D GRASE puts the M0 as control-label volume pair -> iM0 = [1 2];
 Siemens 3D GRASE puts the M0 as the first volume -> iM0 = 1;
 Some Siemens 3D GRASE puts a second Dummy control image -> iDummy = 2;
 
+1. Input parameter admin
+2. Prepare paths
+3. First concatenate NIfTIs
+4. Save M0 NIfTI
+5. Determine ASL indices
+6. Save ASL4D NIfTI
+7. Split relevant JSON parameters/arrays
+8. Copy sidecars
+
+
 
 ----
 ### xASL\_io\_dcm2nii.m

docs/SPMxASL.md

@@ -626,12 +626,17 @@ but earlier Matlab versions do not support this. For backward compatibility, use
 **Format:**
 
 ```matlab
-[InPath] = xASL_spm_admin(InPath, bPadComma1)
+xASL_spm_admin(pathIn[, bPadComma1])
 ```
 
 **Description:**
 
-Force ,1 at end of IMname. This is useful for refIM/srcIM in CoregInit, OldNormalizeWrapper etc.
+This SPM admin function takes a NIfTI path and does a few
+checks to make this valid to SPM. It accepts both .nii and .nii.gz.
+It runs the following steps:
+1. Unzip .nii.gz
+2. Convert char to cell
+3. Add ',1' suffix
 
 
 ----
@@ -665,7 +670,7 @@ affine transformation information.
 **Format:**
 
 ```matlab
-xASL_spm_smooth(pathIn, fwhmSmooth[, pathNew])
+xASL_spm_smooth(pathIn, fwhmSmooth, pathNew])
 ```
 
 **Description:**

docs/index.md

@@ -103,3 +103,5 @@ The following provides an example as how to correctly cite ExploreASL and its th
 * Ref6: Matlab publishes a release twice yearly, which can be reviewed here: https://www.mathworks.com/products/compiler/matlab-runtime.html. You can provide the release number (e.g. 9.4) or year number (e.g. 2018a), or both.
 
 
+
+

site/404.html

@@ -337,6 +337,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="/ExploreASL/1.6.0/Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="/ExploreASL/1.6.0/Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)

site/ASL_Module/index.html

@@ -440,6 +440,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)

site/About/index.html

@@ -344,6 +344,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)

site/FAQ/index.html

@@ -344,6 +344,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)

site/Functions/index.html

@@ -1905,6 +1905,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)
@@ -5231,6 +5246,16 @@ <h3 id="xasl_io_splitaslm">xASL_io_SplitASL.m</h3>
 Philips 3D GRASE puts the M0 as control-label volume pair -&gt; iM0 = [1 2];
 Siemens 3D GRASE puts the M0 as the first volume -&gt; iM0 = 1;
 Some Siemens 3D GRASE puts a second Dummy control image -&gt; iDummy = 2;</p>
+<ol>
+<li>Input parameter admin</li>
+<li>Prepare paths</li>
+<li>First concatenate NIfTIs</li>
+<li>Save M0 NIfTI</li>
+<li>Determine ASL indices</li>
+<li>Save ASL4D NIfTI</li>
+<li>Split relevant JSON parameters/arrays</li>
+<li>Copy sidecars</li>
+</ol>
 <hr />
 <h3 id="xasl_io_dcm2niim">xASL_io_dcm2nii.m</h3>
 <p><strong>Format:</strong></p>

site/Import_Module/index.html

@@ -447,6 +447,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)

site/License/index.html

@@ -339,6 +339,21 @@
 
 
 
+    <li class="md-nav__item">
+      <a href="../Tutorials-QC/" class="md-nav__link">
+        Tutorials (QC)
+      </a>
+    </li>
+  
+
+    
+      
+      
+      
+
+  
+  
+  
     <li class="md-nav__item">
       <a href="../Tutorials-Advanced/" class="md-nav__link">
         Tutorials (Advanced)