Log with correlation_id throughout the ingestion process

[juhtornr]

Issue by viklund
Friday Sep 21, 2018 at 08:30 GMT
Originally opened as NBISweden/LocalEGA#363

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Description

Currently it's difficult to follow a file through the ingestion process from the logs. Adding the correlation_id from rabbitmq will solve this.

DoD (Definition of Done)

All log lines from ingestion contains correlation_id somewhere.

Testing

Look at the logs when running make in the docker/test directory.

[silverdaz]

Code ready, but not merged.
Testsuite is also adjusted to use correlation id for tracking MQ messages, and not specific message content.
One can look at the debug output from the testsuite.

[juhtornr]

Time estimate: 0.5 days