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documentation/DCP-documentation/passing_files_to_DCP.md

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@@ -4,9 +4,12 @@ Distributed-CellProfiler can be told what files to use through LoadData.csv, Bat
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## Metadata use in DCP
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Distributed-CellProfiler requires metadata and grouping in order to split jobs. This means that, unlikely a generic CellProfiler workflow, the inclusion of metadata and grouping are NOT optional for pipelines you wish to use in Distributed-CellProfiler.
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Distributed-CellProfiler requires metadata and grouping in order to split jobs.
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This means that, unlikely a generic CellProfiler workflow, the inclusion of metadata and grouping are NOT optional for pipelines you wish to use in Distributed-CellProfiler.
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- If using LoadData, this means ensuring that your input CSV has some metadata to use for grouping and "Group images by metdata?" is set to "Yes".
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- If using batch files or file lists, this means ensuring that the Metadata and Groups modulles are enabled, and that you are extracting metadata from file and folder names _that will also be present in your remote system_ in the Metadata module in your CellProfiler pipeline. You can pass additional metadata to CellProfiler by `Add another extraction method`, setting the method to `Import from file` and setting Metadata file location to `Default Input Folder`. Metadata of either type can be used for grouping.
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- If using batch files or file lists, this means ensuring that the Metadata and Groups modules are enabled, and that you are extracting metadata from file and folder names _that will also be present in your remote system_ in the Metadata module in your CellProfiler pipeline.
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You can pass additional metadata to CellProfiler by `Add another extraction method`, setting the method to `Import from file` and setting Metadata file location to `Default Input Folder`.
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Metadata of either type can be used for grouping.
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## Load Data
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## File lists
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You can also simply pass a list of absolute file paths (not relative paths) with one file per row in `.txt` format. These must be the absolute paths that Distributed-CellProfiler will see, aka relative to the root of your bucket (which will be mounted as `/bucket`.
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You can also simply pass a list of absolute file paths (not relative paths) with one file per row in `.txt` format.
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These must be the absolute paths that Distributed-CellProfiler will see, aka relative to the root of your bucket (which will be mounted as `/bucket`.
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### Creating File Lists
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