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kmilodenisglezkmilodenisglez
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add bundle.json data and remove patient.json
comment several lines in create_test_data.py
1 parent 7ba80c3 commit 268a0bf

3 files changed

Lines changed: 232 additions & 30 deletions

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‎create_test_data.py‎

Lines changed: 11 additions & 11 deletions
Original file line numberDiff line numberDiff line change
@@ -163,17 +163,17 @@
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}
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})
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# Save the patient files to the input directory
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with open(os.path.join(input_dir, "patient1.json"), "w") as f:
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json.dump(patient_example, f, indent=2)
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with open(os.path.join(input_dir, "patient2.json"), "w") as f:
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json.dump(patient_example2, f, indent=2)
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# Save each medication to a separate file
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for i, med in enumerate(medication_examples):
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with open(os.path.join(input_dir, f"medication{i+1}.json"), "w") as f:
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json.dump(med, f, indent=2)
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# # Save the patient files to the input directory
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# with open(os.path.join(input_dir, "patient1.json"), "w") as f:
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# json.dump(patient_example, f, indent=2)
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#
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# with open(os.path.join(input_dir, "patient2.json"), "w") as f:
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# json.dump(patient_example2, f, indent=2)
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#
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# # Save each medication to a separate file
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# for i, med in enumerate(medication_examples):
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# with open(os.path.join(input_dir, f"medication{i+1}.json"), "w") as f:
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# json.dump(med, f, indent=2)
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# Create a bundle with all resources for testing bulk processing
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bundle = {

‎input/bundle.json‎

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Original file line numberDiff line numberDiff line change
@@ -0,0 +1,221 @@
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{
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"resourceType": "Bundle",
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"type": "collection",
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"entry": [
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{
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"resource": {
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"resourceType": "Patient",
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"id": "example-patient-1",
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"name": [
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{
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"use": "official",
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"family": "Smith",
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"given": [
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"John"
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]
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}
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],
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"telecom": [
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{
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"system": "phone",
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"value": "555-1234"
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},
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{
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"system": "email",
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"value": "[email protected]"
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}
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],
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"gender": "male",
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"birthDate": "1970-01-01",
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"address": [
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{
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"use": "home",
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"line": [
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"123 Main St"
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],
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"city": "Anytown",
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"state": "CA",
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"postalCode": "12345",
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"country": "USA"
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}
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]
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}
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},
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{
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"resource": {
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"resourceType": "Patient",
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"id": "example-patient-2",
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"name": [
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{
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"use": "official",
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"family": "Johnson",
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"given": [
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"Sarah"
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]
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}
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],
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"telecom": [
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{
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"system": "phone",
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"value": "555-5678"
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},
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{
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"system": "email",
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"value": "[email protected]"
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}
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],
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"gender": "female",
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"birthDate": "1985-05-15"
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}
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},
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{
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"resource": {
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"resourceType": "MedicationStatement",
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"id": "med-1",
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"subject": {
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"reference": "Patient/example-patient-1"
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},
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"status": "active",
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"medicationCodeableConcept": {
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"coding": [
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{
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"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "310965",
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"display": "Lisinopril 10 MG Oral Tablet"
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}
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],
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"text": "Lisinopril 10 MG Oral Tablet"
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},
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"effectiveDateTime": "2025-06-10T21:38:43Z",
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"dateAsserted": "2025-07-06T21:38:43Z",
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"dosage": [
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{
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"text": "Take 1 tablet by mouth as needed",
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"timing": {
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"repeat": {
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"frequency": 1,
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"period": 1,
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"periodUnit": "d"
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}
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},
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"route": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "26643006",
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"display": "Oral route"
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}
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]
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}
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}
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]
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}
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},
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{
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"resource": {
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"resourceType": "MedicationStatement",
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"id": "med-2",
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"subject": {
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"reference": "Patient/example-patient-1"
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},
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"status": "active",
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"medicationCodeableConcept": {
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"coding": [
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{
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"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "197318",
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"display": "Ibuprofen 200 MG Oral Tablet"
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}
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],
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"text": "Ibuprofen 200 MG Oral Tablet"
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},
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"effectiveDateTime": "2025-06-14T21:38:43Z",
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"dateAsserted": "2025-07-06T21:38:43Z",
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"dosage": [
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{
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"text": "Take 1 tablet by mouth as needed",
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"timing": {
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"repeat": {
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"frequency": 2,
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"period": 1,
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"periodUnit": "d"
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}
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},
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"route": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "26643006",
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"display": "Oral route"
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}
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]
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}
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}
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]
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}
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},
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{
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"resource": {
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"resourceType": "MedicationStatement",
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"id": "med-3",
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"subject": {
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"reference": "Patient/example-patient-1"
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},
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"status": "active",
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"medicationCodeableConcept": {
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"coding": [
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{
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"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "314076",
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"display": "Simvastatin 20 MG Oral Tablet"
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}
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],
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"text": "Simvastatin 20 MG Oral Tablet"
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},
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"effectiveDateTime": "2025-06-12T21:38:43Z",
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"dateAsserted": "2025-07-06T21:38:43Z",
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"dosage": [
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{
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"text": "Take 1 tablet by mouth twice daily",
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"timing": {
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"repeat": {
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"frequency": 2,
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"period": 1,
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"periodUnit": "d"
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}
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},
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"route": {
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"coding": [
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{
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"system": "http://snomed.info/sct",
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"code": "26643006",
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"display": "Oral route"
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}
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]
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}
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}
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]
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}
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},
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{
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"resource": {
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"resourceType": "MedicationStatement",
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"id": "med-4",
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"subject": {
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"reference": "Patient/example-patient-2"
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},
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"status": "active",
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"medicationCodeableConcept": {
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"coding": [
210+
{
211+
"system": "http://www.nlm.nih.gov/research/umls/rxnorm",
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"code": "197318",
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"display": "Ibuprofen 200 MG Oral Tablet"
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}
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],
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"text": "Ibuprofen 200 MG Oral Tablet"
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}
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}
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}
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]
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}

‎input/patient.json‎

Lines changed: 0 additions & 19 deletions
This file was deleted.

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