From e89db82e366195dea2fb49ab93173c10f4cbd3b1 Mon Sep 17 00:00:00 2001 From: John Mason Date: Thu, 17 May 2018 14:31:52 -0700 Subject: [PATCH] fixed Keq for enolase reaction to not include H2O --- data/reaction/equilibrium.dat | 14 +++++++------- data/reaction/reaction.dat | 1 + data/reaction/stoichiometry.dat | 5 +++++ figure5.py | 1 + 4 files changed, 14 insertions(+), 7 deletions(-) diff --git a/data/reaction/equilibrium.dat b/data/reaction/equilibrium.dat index 27c8545..793b1ac 100644 --- a/data/reaction/equilibrium.dat +++ b/data/reaction/equilibrium.dat @@ -80,13 +80,13 @@ GPM_reverse, 8.65, 16 GPM_reverse, 11.65, 17 GPM_reverse, 6.1, 18 -ENO, 2.3, 1 -ENO, 0.54, 2 -ENO, 2.9, 3 -ENO, 4.6, 4 -ENO, 1.43, 5 -ENO, 5.15, 6 -ENO, 2.15, 7 +ENO_no_H2O, 2.3, 1 +ENO_no_H2O, 0.54, 2 +ENO_no_H2O, 2.9, 3 +ENO_no_H2O, 4.6, 4 +ENO_no_H2O, 1.43, 5 +ENO_no_H2O, 5.15, 6 +ENO_no_H2O, 2.15, 7 PYK_no_H_reverse, 1.55e-4, 1 PYK_no_H_reverse, 1.1e-3, 2 diff --git a/data/reaction/reaction.dat b/data/reaction/reaction.dat index cd3e399..7a90443 100644 --- a/data/reaction/reaction.dat +++ b/data/reaction/reaction.dat @@ -21,4 +21,5 @@ PFK_no_H: pfk reaction without H+ PGK_reverse: pgk reverse reaction GAP_PGK: gap-pgk net reaction GPM_reverse: gpm reverse reaction +ENO_no_H2O: enolase reaction without water PYK_no_H_reverse: pyk reverse reaction without H+ diff --git a/data/reaction/stoichiometry.dat b/data/reaction/stoichiometry.dat index e1eb78c..7fc05db 100644 --- a/data/reaction/stoichiometry.dat +++ b/data/reaction/stoichiometry.dat @@ -120,6 +120,11 @@ NADH, 1 @product(source = BR09S, reaction = GPM_reverse) 3PG, 1 +@reactant(source = EcoCyc, reaction = ENO_no_H2O) +2PG, 1 +@product(source = EcoCyc, reaction = ENO_no_H2O) +PEP, 1 + @reactant(source = BR09S, reaction = PYK_no_H_reverse) ATP, 1 PYR, 1 diff --git a/figure5.py b/figure5.py index 7350b5f..185f4e2 100644 --- a/figure5.py +++ b/figure5.py @@ -43,6 +43,7 @@ 'GPM', 'GPM_reverse', 'ENO', + 'ENO_no_H2O', 'PYK', 'PYK_no_H_reverse', 'PPS'