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Commit 6aee702
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Switch AscertainedForParsimonyUninformativeFilteredAlignment to spec FilteredAlignment
beast.base.evolution.alignment.FilteredAlignment is @deprecated in
beast3 and replaced by beast.base.spec.evolution.alignment.FilteredAlignment.
The spec class still extends Alignment (the legacy StateNode, not
itself deprecated), so all the inherited fields the override relies on
— isAscertainedInput, excludefromInput, excludetoInput,
setupAscertainment() — remain available unchanged. Only the import
and extends clause needed updating.
mvn test: 8/8 pass.
Found via the beast3-migration analyzer: the only remaining Java
migration item for morph-models.1 parent db64781 commit 6aee702
1 file changed
Lines changed: 1 addition & 1 deletion
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- src/main/java/morphmodels/evolution/alignment
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