diff --git a/.github/workflows/r-cmd-check.yaml b/.github/workflows/r-cmd-check.yaml index da9ae123..8bb1e408 100644 --- a/.github/workflows/r-cmd-check.yaml +++ b/.github/workflows/r-cmd-check.yaml @@ -13,6 +13,8 @@ on: jobs: R-CMD-check: runs-on: ${{ matrix.config.os }} + container: + image: docker.io/rocker/geospatial:4.4.1 name: ${{ matrix.config.os }} (${{ matrix.config.r }}) @@ -33,14 +35,6 @@ jobs: steps: - uses: actions/checkout@v4 - - uses: r-lib/actions/setup-pandoc@v2 - - - uses: r-lib/actions/setup-r@v2 - with: - r-version: ${{ matrix.config.r }} - http-user-agent: ${{ matrix.config.http-user-agent }} - use-public-rspm: true - - uses: r-lib/actions/setup-r-dependencies@v2 with: extra-packages: any::rcmdcheck diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index 81bf5035..cbc05997 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -11,16 +11,15 @@ name: Code coverage jobs: test-coverage: runs-on: ubuntu-latest + container: + image: docker.io/rocker/geospatial:4.4.2 + env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - uses: actions/checkout@v4 - - uses: r-lib/actions/setup-r@v2 - with: - use-public-rspm: true - - uses: r-lib/actions/setup-r-dependencies@v2 with: extra-packages: any::covr diff --git a/NEWS.md b/NEWS.md index cccfb750..03a146f3 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,6 +1,7 @@ # CFAEpiNow2Pipeline v0.2.0 ## Features +* Updating R CMD check to use rocker image * Automate creation of outlier csv for nssp-elt-2/outliers * Fix 'latest' tag for CI * Updated path for read/write of data outliers