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content/0_Introduction.ipynb

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"cells": [
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"source": "<div class=\"jupyter-biolm-header\">\n <img style=\"float: left; padding-right: 10px; height: 60px\" src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/logo.png\">\n <p>\n <br>\n <br>\n <br>\n </p>\n</div>\n\n# **Introduction**\n\nIntroduction to the BioLM.ai API and programmatic access to the platform.\n\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://www.svgrepo.com/show/354202/postman-icon.svg\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://api.biolm.ai/\"> <h4 style=\"margin: 0;\"><b>Postman API Docs</b></h4></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Python-logo-notext.svg/1869px-Python-logo-notext.svg.png\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://docs.biolm.ai/en/latest/index.html\"><h4 style=\"margin: 0;\"><b>Python SDK Docs</b></h4></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n </td>\n </tr>\n</table>\n\n<br>\n\n---",
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"source": "<div class=\"jupyter-biolm-header\">\n <img style=\"float: left; padding-right: 10px; height: 60px\" src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/logo.png\">\n <p>\n <br>\n <br>\n <br>\n </p>\n</div>\n\n# Introduction\n\nIntroduction to the BioLM.ai API and programmatic access to the platform.\n\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://www.svgrepo.com/show/354202/postman-icon.svg\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://api.biolm.ai/\"> <h5 style=\"margin: 0;\"><b>Postman API Docs</b></h5></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Python-logo-notext.svg/1869px-Python-logo-notext.svg.png\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://docs.biolm.ai/en/latest/index.html\"><h5 style=\"margin: 0;\"><b>Python SDK Docs</b></h5></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n </td>\n </tr>\n</table>\n\n<br>\n\n---",
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"source": "## **Set Your API Token**\n\nIn order to use the BioLM API, you need to have a token. You can get one from\nthe [User API Tokens](https://biolm.ai/ui/accounts/user-api-tokens/) page.\n\nPaste the API token you generated in the cell below, as the value\nof the variable `BIOLMAI_TOKEN `.",
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"source": "## Set Your API Token\n\nIn order to use the BioLM API, you need to have a token. You can get one from\nthe [User API Tokens](https://biolm.ai/ui/accounts/user-api-tokens/) page.\n\nPaste the API token you generated in the cell below, as the value\nof the variable `BIOLMAI_TOKEN `.",
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"source": "## Next Steps\n\nCheck out additional tutorials at [jupyter.biolm.ai](https://jupyter.biolm.ai),\nor head over to our [BioLM Documentation](https://docs.biolm.ai) to explore\nadditional models and functionality.",
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"source": "### See more use-cases and APIs on your [BioLM Console Catalog](https://biolm.ai/console/catalog/).\n<br>\n\n#### BioLM hosts deep learning models and runs inference at scale. You do the science.\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/enzyme_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Enzyme Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/antibody_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Antibody Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/biosecurity_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Biosecurity\n </td>\n </tr>\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/single_cell_genomics_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Single-Cell Genomics\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/dna_seq_modeling_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> DNA Sequence Modelling\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/finetuning_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Finetuning\n </td>\n </tr>\n</table>\n\n### [**Contact us**](https://biolm.ai/ui/contact-us/) to learn more.\n",
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"source": "## Next Steps\n\nCheck out additional tutorials at [jupyter.biolm.ai](https://jupyter.biolm.ai),\nor head over to our [BioLM Documentation](https://docs.biolm.ai) to explore\nadditional models and functionality.\n\n#### See more use-cases and APIs on your [BioLM Console Catalog](https://biolm.ai/console/catalog/).\n<br>\n\n##### BioLM hosts deep learning models and runs inference at scale. You do the science.\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/enzyme_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Enzyme Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/antibody_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Antibody Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/biosecurity_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Biosecurity\n </td>\n </tr>\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/single_cell_genomics_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Single-Cell Genomics\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/dna_seq_modeling_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> DNA Sequence Modelling\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/finetuning_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Finetuning\n </td>\n </tr>\n</table>\n\n#### [**Contact us**](https://biolm.ai/ui/contact-us/) to learn more.\n",
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content/1.0_ESMFold.ipynb

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"source": "<div class=\"jupyter-biolm-header\">\n <img style=\"float: left; padding-right: 10px; height: 60px\" src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/logo.png\">\n <p>\n <br>\n <br>\n <br>\n </p>\n</div>\n\n# **ESMFold API**\n\nProtein 3D structure prediction. Predict PDBs directly from a protein sequence.\n\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://www.svgrepo.com/show/354202/postman-icon.svg\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://api.biolm.ai/#f835034e-f0cf-46c4-b74e-8283993063f9\"> <h4 style=\"margin: 0;\"><b>Postman API Docs</b></h4></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Python-logo-notext.svg/1869px-Python-logo-notext.svg.png\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://docs.biolm.ai/en/latest/model-docs/esmfold/ESMFold_API.html\"><h4 style=\"margin: 0;\"><b>Python SDK Docs</b></h4></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://github.githubassets.com/assets/GitHub-Mark-ea2971cee799.png\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://github.com/facebookresearch/esm\"><h4 style=\"margin: 0;\"><b>Github Link</b></h4></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://info.arxiv.org/brand/images/brand-logomark-primary-large.jpg\" style=\"height: 20px; float: left; padding-right: 10px;\"><a href=\"https://www.biorxiv.org/content/10.1101/2022.07.20.500902v1.full.pdf\"><h4 style=\"margin: 0;\"><b>Paper Link</b></h4></a>\n </td>\n </tr>\n</table>\n\n<br>\n\n---",
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"source": "<div class=\"jupyter-biolm-header\">\n <img style=\"float: left; padding-right: 10px; height: 60px\" src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/logo.png\">\n <p>\n <br>\n <br>\n <br>\n </p>\n</div>\n\n# ESMFold API\n\nProtein 3D structure prediction. Predict PDBs directly from a protein sequence.\n\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://www.svgrepo.com/show/354202/postman-icon.svg\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://api.biolm.ai/#f835034e-f0cf-46c4-b74e-8283993063f9\"> <h5 style=\"margin: 0;\"><b>Postman API Docs</b></h5></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Python-logo-notext.svg/1869px-Python-logo-notext.svg.png\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://docs.biolm.ai/en/latest/model-docs/esmfold/ESMFold_API.html\"><h5 style=\"margin: 0;\"><b>Python SDK Docs</b></h5></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://github.githubassets.com/assets/GitHub-Mark-ea2971cee799.png\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://github.com/facebookresearch/esm\"><h5 style=\"margin: 0;\"><b>Github Link</b></h5></a>\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://info.arxiv.org/brand/images/brand-logomark-primary-large.jpg\" style=\"height: 15px; float: left; padding-right: 10px;\"><a href=\"https://www.biorxiv.org/content/10.1101/2022.07.20.500902v1.full.pdf\"><h5 style=\"margin: 0;\"><b>Paper Link</b></h5></a>\n </td>\n </tr>\n</table>\n\n<br>\n\n---",
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"source": "## **Set Your API Token**\n\nIn order to use the BioLM API, you need to have a token. You can get one from\nthe [User API Tokens](https://biolm.ai/ui/accounts/user-api-tokens/) page.\n\nPaste the API token you generated in the cell below, as the value\nof the variable `BIOLMAI_TOKEN `.",
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"source": "## Set Your API Token\n\nIn order to use the BioLM API, you need to have a token. You can get one from\nthe [User API Tokens](https://biolm.ai/ui/accounts/user-api-tokens/) page.\n\nPaste the API token you generated in the cell below, as the value\nof the variable `BIOLMAI_TOKEN `.",
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"source": "### See more use-cases and APIs on your [BioLM Console Catalog](https://biolm.ai/console/catalog/).\n<br>\n\n#### BioLM hosts deep learning models and runs inference at scale. You do the science.\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/enzyme_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Enzyme Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/antibody_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Antibody Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/biosecurity_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Biosecurity\n </td>\n </tr>\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/single_cell_genomics_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Single-Cell Genomics\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/dna_seq_modeling_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> DNA Sequence Modelling\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/finetuning_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Finetuning\n </td>\n </tr>\n</table>\n\n### [**Contact us**](https://biolm.ai/ui/contact-us/) to learn more.\n",
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"source": "## Next Steps\n\nCheck out additional tutorials at [jupyter.biolm.ai](https://jupyter.biolm.ai),\nor head over to our [BioLM Documentation](https://docs.biolm.ai) to explore\nadditional models and functionality.\n\n#### See more use-cases and APIs on your [BioLM Console Catalog](https://biolm.ai/console/catalog/).\n<br>\n\n##### BioLM hosts deep learning models and runs inference at scale. You do the science.\n<br>\n\n<table class=\"jupyter-biolm-header-table\" style=\"width: 100%; border-collapse: collapse; background-color: white; float: left;\">\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/enzyme_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Enzyme Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/antibody_engineering_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Antibody Engineering\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/biosecurity_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Biosecurity\n </td>\n </tr>\n <tr>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/single_cell_genomics_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Single-Cell Genomics\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/dna_seq_modeling_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> DNA Sequence Modelling\n </td>\n <td style=\"text-align: left; vertical-align: middle; background-color: white;\">\n <img src=\"https://d31e6ufxekikrt.cloudfront.net/static/ui/images/console-overview/finetuning_icon.png\" style=\"height: 40px; float: left; padding-right: 10px;\"> Finetuning\n </td>\n </tr>\n</table>\n\n#### [**Contact us**](https://biolm.ai/ui/contact-us/) to learn more.\n",
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