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Update to v3 URLs in Jupyter guides; WIP for dynamic API forms
1 parent 91057a8 commit 7263c25

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+15
-15
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‎html/0_Introduction.html‎

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@@ -100,7 +100,7 @@ <h2 id="Example-API-Call">Example API Call<a class="anchor-link" href="#Example-
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<span class="p">]</span>
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<span class="p">}</span>
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<span class="n">url</span> <span class="o">=</span> <span class="s2">&quot;https://biolm.ai/api/v2/proteinfer-go/predict/&quot;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="s2">&quot;https://biolm.ai/api/v3/proteinfer-go/predict/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/1.0_ESMFold.html‎

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@@ -104,7 +104,7 @@ <h2 id="API-Call-with-Python-requests">API Call with Python requests<a class="an
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<span class="p">]</span>
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<span class="p">}</span>
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<span class="n">url</span> <span class="o">=</span> <span class="s2">&quot;https://biolm.ai/api/v2/esmfold-singlechain/predict/&quot;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="s2">&quot;https://biolm.ai/api/v3/esmfold-singlechain/predict/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/1.1_ESMFold_PDB_Generation.html‎

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@@ -132,7 +132,7 @@ <h2 id="Make-API-Request">Make API Request<a class="anchor-link" href="#Make-API
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<div class="prompt input_prompt">In&nbsp;[5]:</div>
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<div class="inner_cell">
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<div class="input_area">
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/2.0_ESM2.html‎

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@@ -98,7 +98,7 @@ <h2 id="API-Call-with-Python-requests">API Call with Python requests<a class="an
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">SLUG</span> <span class="o">=</span> <span class="s1">&#39;esm2-650m&#39;</span>
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<span class="n">ACTION</span> <span class="o">=</span> <span class="s1">&#39;encode&#39;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/2.1_ESM2_Attention_Map.html‎

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@@ -151,7 +151,7 @@ <h2 id="Define-Endpoint-Params">Define Endpoint Params<a class="anchor-link" hre
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<div class="prompt input_prompt">In&nbsp;[6]:</div>
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<div class="inner_cell">
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<div class="input_area">
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/2.2_ESM2_Protein_Contact_Map.html‎

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@@ -149,7 +149,7 @@ <h2 id="Make-API-Request">Make API Request<a class="anchor-link" href="#Make-API
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<div class="prompt input_prompt">In&nbsp;[5]:</div>
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<div class="inner_cell">
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<div class="input_area">
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/2.3_ESM2_Embeddings_XGBoost.html‎

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@@ -322,7 +322,7 @@ <h2 id="Single-Sequence-Embeddings">Single Sequence Embeddings<a class="anchor-l
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<span class="n">data_str</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">data</span><span class="p">)</span>
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<span class="n">resp</span> <span class="o">=</span> <span class="n">requests</span><span class="o">.</span><span class="n">post</span><span class="p">(</span>
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<span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">model_slug</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">action</span><span class="si">}</span><span class="s2">/&quot;</span><span class="p">,</span>
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<span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">model_slug</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">action</span><span class="si">}</span><span class="s2">/&quot;</span><span class="p">,</span>
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<span class="n">data</span><span class="o">=</span><span class="n">data_str</span><span class="p">,</span>
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<span class="n">headers</span><span class="o">=</span><span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/3.0_ESM_1v.html‎

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@@ -99,7 +99,7 @@ <h2 id="API-Call-with-Python-requests">API Call with Python requests<a class="an
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<span class="n">SLUG</span> <span class="o">=</span> <span class="s1">&#39;esm1v-n3&#39;</span>
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<span class="n">ACTION</span> <span class="o">=</span> <span class="s1">&#39;predict&#39;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

‎html/3.1_ESM-1v_Deep_Mutational_Scan_Protein.html‎

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@@ -130,7 +130,7 @@ <h2 id="Set-Your-API-Token">Set Your API Token<a class="anchor-link" href="#Set-
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<span class="sd"> From API docs: https://api.biolm.ai/#54d3367a-b5d1-4f18-aa44-23ae3914a446</span>
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<span class="sd"> &quot;&quot;&quot;</span>
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<span class="n">SLUG</span> <span class="o">=</span> <span class="sa">f</span><span class="s1">&#39;esm1v-n</span><span class="si">{</span><span class="n">model_num</span><span class="si">}</span><span class="s1">&#39;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s1">&#39;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s1">/predict/&#39;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s1">&#39;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s1">/predict/&#39;</span>
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<span class="k">assert</span> <span class="s1">&#39;&lt;mask&gt;&#39;</span> <span class="ow">in</span> <span class="n">seq</span>
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<span class="k">assert</span> <span class="mi">5</span> <span class="o">&gt;=</span> <span class="n">model_num</span> <span class="o">&gt;=</span> <span class="mi">1</span>

‎html/4.0_ESM-IF1.html‎

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@@ -97,7 +97,7 @@ <h2 id="API-Call-with-Python-requests">API Call with Python requests<a class="an
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<div class=" highlight hl-ipython3"><pre><span></span><span class="n">SLUG</span> <span class="o">=</span> <span class="s1">&#39;esm-if1&#39;</span>
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<span class="n">ACTION</span> <span class="o">=</span> <span class="s1">&#39;generate&#39;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v2/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">url</span> <span class="o">=</span> <span class="sa">f</span><span class="s2">&quot;https://biolm.ai/api/v3/</span><span class="si">{</span><span class="n">SLUG</span><span class="si">}</span><span class="s2">/</span><span class="si">{</span><span class="n">ACTION</span><span class="si">}</span><span class="s2">/&quot;</span>
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<span class="n">headers</span> <span class="o">=</span> <span class="p">{</span>
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<span class="s2">&quot;Content-Type&quot;</span><span class="p">:</span> <span class="s2">&quot;application/json&quot;</span><span class="p">,</span>

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