diff --git a/README.md b/README.md index 0157488..7492b16 100644 --- a/README.md +++ b/README.md @@ -26,12 +26,10 @@ Bayesian Single-Cutoff Residence Time Analysis (basicrta) A package to extract binding kinetics from molecular dynamics simulations based -on [Sexton_2024]. +on Sexton (2024) [^1]. -.. [Sexton_2024] Sexton, R.; Fazel, M.; Schweiger, M.; Pressé, S.; - Beckstein, O. Bayesian Nonparametric Analysis of Residence Times for - Protein-Lipid Interactions in Molecular Dynamics Simulations. November 9, - 2024. https://doi.org/10.1101/2024.11.07.622502. +[^1]: Sexton, R.; Fazel, M.; Schweiger, M.; Pressé, S.; Beckstein, O. Bayesian Nonparametric Analysis of Residence Times for + Protein-Lipid Interactions in Molecular Dynamics Simulations. bioRxiv. November 9, 2024. https://doi.org/10.1101/2024.11.07.622502. basicrta is bound by a [Code of Conduct](https://github.com/becksteinlab/basicrta/blob/main/CODE_OF_CONDUCT.md). diff --git a/docs/source/index.rst b/docs/source/index.rst index f9047df..462ac9f 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -11,7 +11,7 @@ nonparametric inference to determine time-scales of the underlying binding processes. The output is processed to give frames belonging to a given process with an associated time-scale, which can be further analyzed. -This package was written to perform the analyses in [Sexton_2024]. +This package was written to perform the analyses in [Sexton_2024]_. .. toctree:: @@ -36,6 +36,6 @@ Indices and tables .. [Sexton_2024] Sexton, R.; Fazel, M.; Schweiger, M.; Pressé, S.; Beckstein, O. Bayesian Nonparametric Analysis of Residence Times for - Protein-Lipid Interactions in Molecular Dynamics Simulations. November 9, + Protein-Lipid Interactions in Molecular Dynamics Simulations. bioRxiv. November 9, 2024. https://doi.org/10.1101/2024.11.07.622502.