From da7ce1d672b7c9a548508979c8181fa2d2b3ae40 Mon Sep 17 00:00:00 2001 From: YOUR_FIRSTNAME YOUR_LASTNAME Date: Mon, 16 Dec 2024 12:38:45 -0700 Subject: [PATCH] added option processing for label-cutoff to cluster.py --- basicrta/cluster.py | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/basicrta/cluster.py b/basicrta/cluster.py index cd0b87f..275acb1 100644 --- a/basicrta/cluster.py +++ b/basicrta/cluster.py @@ -182,6 +182,11 @@ def b_color_structure(self, structure): parser.add_argument('--cutoff', type=float) parser.add_argument('--niter', type=int, default=110000) parser.add_argument('--prot', type=str, default=None, nargs='?') + parser.add_argument('--label-cutoff', type=float, default=3, + dest='label_cutoff', + help='Only label residues with tau > ' + 'LABEL-CUTOFF * . ') + parser.add_argument('--structure', type=str, nargs='?') args = parser.parse_args() @@ -189,4 +194,4 @@ def b_color_structure(self, structure): pp.reprocess(nproc=args.nproc) pp.collect_results() pp.write_data() - pp.plot_protein() + pp.plot_protein(label_cutoff=args.label_cutoff)