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Fix linting and update Changelog
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CHANGELOG.md

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@@ -40,6 +40,7 @@ Code contributions to the release:
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- Remove wrapper from github actions (test_sftp_modules) [#421](https://github.com/BU-ISCIII/relecov-tools/pull/421)
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- Add Validation for Dropdown Columns: Notify Users of Invalid Entries in build-schema module [#423](https://github.com/BU-ISCIII/relecov-tools/pull/423)
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- Test SFTP Login by Updating Port Assignment in wrapper_manager [#426](https://github.com/BU-ISCIII/relecov-tools/pull/426)
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- Update Test Data for new Schema & Modify JSON Filepaths in read-bioinfo-metadata [#427](https://github.com/BU-ISCIII/relecov-tools/pull/427)
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#### Fixes
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relecov_tools/read_bioinfo_metadata.py

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@@ -679,7 +679,11 @@ def add_bioinfo_files_path(self, files_found_dict, j_data):
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break # Exit loop if match found
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path_key = f"{self.software_name}_filepath_{key}"
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if file_path != "Not Provided [GENEPIO:0001668]":
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analysis_results_path = os.path.join(self.output_folder, "analysis_results", os.path.basename(file_path))
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analysis_results_path = os.path.join(
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self.output_folder,
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"analysis_results",
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os.path.basename(file_path),
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)
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row[path_key] = analysis_results_path
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else:
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row[path_key] = file_path

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