From 495ea1e21fa9b88614fa92d452f2a0829cd22ff5 Mon Sep 17 00:00:00 2001 From: FrancescoSantini Date: Fri, 23 Aug 2024 11:19:19 +0200 Subject: [PATCH] added dynamic resources to check_annotation_files rule --- snakefile.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/snakefile.py b/snakefile.py index b02766f..b21a630 100644 --- a/snakefile.py +++ b/snakefile.py @@ -257,7 +257,7 @@ def lookup(column, predicate, fields=[]): output: os.path.join(OUTPUT_DIR, 'input_annotation_stats.tsv') resources: - mem_mb = config['execution']['rules']['check_annotation_files']['memory'] + mem_mb = lambda wc, input: max(1.5 * input.size_mb, config['execution']['rules']['check_annotation_files']['memory']) log: os.path.join(LOG_DIR, 'check_annotation_files.log') shell: "{RSCRIPT_EXEC} {SCRIPTS_DIR}/validate_input_annotation.R {input.gtf} {input.cdna} {input.dna} {OUTPUT_DIR} >> {log} 2>&1"