From 2e05e6ae7aa9d71809df4e5685fcd5b212ebddd8 Mon Sep 17 00:00:00 2001
From: jscgh <j.caley@unsw.edu.au>
Date: Tue, 23 Jun 2026 16:28:04 +1000
Subject: [PATCH] Expose random seed form option for Boltz

---
 form.yml.erb           | 2 +-
 template/script.sh.erb | 3 +++
 2 files changed, 4 insertions(+), 1 deletion(-)

diff --git a/form.yml.erb b/form.yml.erb
index 79e8ec6..8e36059 100644
--- a/form.yml.erb
+++ b/form.yml.erb
@@ -78,7 +78,7 @@ attributes:
                 <li><b>ESMFold</b> Medium/Low accuracy, Fastest; No evolutionary sequence calculations - <a href="https://doi.org/10.1126/science.ade2574">Paper</a></li>
             </ul>
         options:
-            - ["Boltz", "boltz", {data-hide-prot_mode: true, data-hide-full_dbs: true, data-hide-random_seed: true, data-hide-colabfold_num_recycles: true, data-hide-colabfold_advanced_options: true, data-hide-colabfold_num_seeds: true, data-hide-colabfold_use_dropout: true, data-hide-colabfold_max_msa: true, data-hide-esmfold_num_recycles: true}]
+            - ["Boltz", "boltz", {data-hide-prot_mode: true, data-hide-full_dbs: true, data-hide-colabfold_num_recycles: true, data-hide-colabfold_advanced_options: true, data-hide-colabfold_num_seeds: true, data-hide-colabfold_use_dropout: true, data-hide-colabfold_max_msa: true, data-hide-esmfold_num_recycles: true}]
             - ["AlphaFold2", "alphafold2", {data-hide-colabfold_num_recycles: true, data-hide-colabfold_advanced_options: true, data-hide-colabfold_num_seeds: true, data-hide-colabfold_use_dropout: true, data-hide-colabfold_max_msa: true, data-hide-esmfold_num_recycles: true, data-hide-boltz_use_potentials: true}]
             - ["ColabFold", "colabfold", {data-hide-full_dbs: true, data-hide-esmfold_num_recycles: true, data-hide-boltz_use_potentials: true}]
             - ["ESMFold", "esmfold", {data-hide-full_dbs: true, data-hide-random_seed: true, data-hide-colabfold_num_recycles: true, data-hide-colabfold_advanced_options: true, data-hide-colabfold_num_seeds: true, data-hide-colabfold_use_dropout: true, data-hide-colabfold_max_msa: true, data-hide-boltz_use_potentials: true}]
diff --git a/template/script.sh.erb b/template/script.sh.erb
index d360cf6..1fb2339 100755
--- a/template/script.sh.erb
+++ b/template/script.sh.erb
@@ -304,6 +304,9 @@ fi
 if [ "<%= context.af_method %>" == "boltz" ]; then
     PROT_MODE="boltz"
     ARGS="${ARGS} --boltz_db ${DB_PATH} --colabfold_db ${DB_PATH} --use_msa_server ${USE_MSA_SERVER}"
+    if [ -n "${RANDOM_SEED}" ]; then
+        ARGS="${ARGS} --random_seed ${RANDOM_SEED}"
+    fi
     if [ "${BOLTZ_USE_POTENTIALS}" == "true" ]; then
         ARGS="${ARGS} --boltz_use_potentials true"
     fi