diff --git a/R/readRangedSummarizedExperiment.R b/R/readRangedSummarizedExperiment.R index 774314b..d0c984a 100644 --- a/R/readRangedSummarizedExperiment.R +++ b/R/readRangedSummarizedExperiment.R @@ -3,7 +3,7 @@ #' Read a \linkS4class{RangedSummarizedExperiment} from its on-disk representation. #' This is usually not directly called by users, but is instead called by dispatch in \code{\link{readObject}}. #' -#' @param path String containing a path to a directory, itself created using the \code{\link{stageObject}} method for \linkS4class{RangedSummarizedExperiment} objects. +#' @param path String containing a path to a directory, itself created using the \code{\link{saveObject}} method for \linkS4class{RangedSummarizedExperiment} objects. #' @param metadata Named list of metadata for this object, see \code{\link{readObjectFile}} for details. #' @param ... Further arguments passed to \code{\link{readSummarizedExperiment}} and internal \code{\link{altReadObject}} calls. #' @@ -11,7 +11,7 @@ #' #' @author Aaron Lun #' @seealso -#' \code{"\link{saveObject,RangedSummarizedExperiment-method}"}, to save the SummarizedExperiment to disk. +#' \code{"\link{saveObject,RangedSummarizedExperiment-method}"}, to save the RangedSummarizedExperiment to disk. #' #' @examples #' # Mocking up an experiment: diff --git a/R/readSummarizedExperiment.R b/R/readSummarizedExperiment.R index 45956c0..fdf890b 100644 --- a/R/readSummarizedExperiment.R +++ b/R/readSummarizedExperiment.R @@ -3,7 +3,7 @@ #' Read a \linkS4class{SummarizedExperiment} from its on-disk representation. #' This is usually not directly called by users, but is instead called by dispatch in \code{\link{readObject}}. #' -#' @param path String containing a path to a directory, itself created using the \code{\link{stageObject}} method for \linkS4class{SummarizedExperiment} objects. +#' @param path String containing a path to a directory, itself created using the \code{\link{saveObject}} method for \linkS4class{SummarizedExperiment} objects. #' @param metadata Named list of metadata for this object, see \code{\link{readObjectFile}} for details. #' @param ... Further arguments passed to internal \code{\link{altReadObject}} calls. #' diff --git a/man/readRangedSummarizedExperiment.Rd b/man/readRangedSummarizedExperiment.Rd index d4811bb..fce4de0 100644 --- a/man/readRangedSummarizedExperiment.Rd +++ b/man/readRangedSummarizedExperiment.Rd @@ -7,7 +7,7 @@ readRangedSummarizedExperiment(path, metadata, ...) } \arguments{ -\item{path}{String containing a path to a directory, itself created using the \code{\link{stageObject}} method for \linkS4class{RangedSummarizedExperiment} objects.} +\item{path}{String containing a path to a directory, itself created using the \code{\link{saveObject}} method for \linkS4class{RangedSummarizedExperiment} objects.} \item{metadata}{Named list of metadata for this object, see \code{\link{readObjectFile}} for details.} @@ -38,7 +38,7 @@ readObject(tmp) } \seealso{ -\code{"\link{saveObject,RangedSummarizedExperiment-method}"}, to save the SummarizedExperiment to disk. +\code{"\link{saveObject,RangedSummarizedExperiment-method}"}, to save the RangedSummarizedExperiment to disk. } \author{ Aaron Lun diff --git a/man/readSummarizedExperiment.Rd b/man/readSummarizedExperiment.Rd index f9d1c43..409601a 100644 --- a/man/readSummarizedExperiment.Rd +++ b/man/readSummarizedExperiment.Rd @@ -8,7 +8,7 @@ readSummarizedExperiment(path, metadata, ...) } \arguments{ -\item{path}{String containing a path to a directory, itself created using the \code{\link{stageObject}} method for \linkS4class{SummarizedExperiment} objects.} +\item{path}{String containing a path to a directory, itself created using the \code{\link{saveObject}} method for \linkS4class{SummarizedExperiment} objects.} \item{metadata}{Named list of metadata for this object, see \code{\link{readObjectFile}} for details.}