diff --git a/.keep b/.keep
new file mode 100644
index 00000000..e69de29b
diff --git a/.nojekyll b/.nojekyll
new file mode 100644
index 00000000..e69de29b
diff --git a/assets/doctave-app.js b/assets/doctave-app.js
new file mode 100644
index 00000000..4351ffc1
--- /dev/null
+++ b/assets/doctave-app.js
@@ -0,0 +1,241 @@
+function search() {
+ box = document.getElementById('search-box');
+ list = document.getElementById('search-results');
+ list.innerHTML = '';
+
+ if (box.value == "") {
+ return
+ }
+
+ config = {
+ fields: {
+ title: {
+ boost: 2,
+ },
+ body: {
+ boost: 1
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+ },
+ bool: "OR",
+ expand: true
+ }
+
+ INDEX.search(box.value, config).forEach(function (result) {
+ listItem = document.createElement("li");
+ listItem.className = "search-result-item";
+ listItem.innerHTML =
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+ " " + searchPreview(result.doc.body) + "
");
+
+ element.innerHTML = "
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+Example workflow
+
+
+ # Assemble and recover from each sample individually
+# 20 samples used for differential abundance binning
+binchicken coassemble \
+ --forward-list samples_forward.txt --reverse-list samples_reverse.txt \
+ --run-aviary --single-assembly \
+ --cores 64 --output binchicken_single_assembly
+
+# Assemble and recover from 2-sample coassemblies
+# Prioritising samples with genomes not previously recovered
+binchicken iterate \
+ --coassemble-output binchicken_single_assembly \
+ --run-aviary --assemble-unmapped \
+ --cores 64 --output binchicken_2_coassembly
+
+# Perform another iteration of coassembly, with 3-samples this time
+binchicken iterate \
+ --coassembly-samples 3 \
+ --coassemble-output binchicken_2_coassembly \
+ --run-aviary --assemble-unmapped \
+ --cores 64 --output binchicken_3_coassembly
+