Daugava

[MarkusKonk]

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URLs

URL to input datasets: https://doi.org/10.5281/zenodo.15234377
URL to GitHub: https://github.com/AstraLabuce/aquainfra-usecase-Daugava/tree/containerize
Data-to-Knowledge Package: https://doi.org/10.5281/zenodo.14830529

Commands for running Docker commands:

https://github.com/AstraLabuce/aquainfra-usecase-Daugava/tree/containerize?tab=readme-ov-file#running-functions-via-docker

Checklist

• Input data is identified and/or accessible via DDAS
  • Input data is made accessible under an open license
• Analysis code is available on GitHub
  • Analysis code is made accessible under an open license
• Workflow is sketched
• Analysis is split into reusable functions
  • Input parameters are identified
  • functions follow input - processing - output - logic
  • input data can be passes via URL
  • output data is stored in file, e.g., csv, json etc.
• Reusable functions are saved in separate files
• Runtime, libraries, and library versions identified
• R commands are added to README
• Analysis is dockerized
• Docker commands are added to README
• OGC API Processes created locally
  • python scripts created
  • titles and descriptions for input parameters added to json
• OGC API Processes deployed on server
• Tests successful
• Galaxy tool created locally
• Galaxy tool deployed on server
• Tests successful
• Workflow is complete