Guidelines
Project Version
all
Platform and OS Version
Ubuntu 22.04
Existing Issues
no
What happened?
The flip argument of the visual_channel_y function does not work, while in gosling.js it works pretty well
Steps to reproduce
`
track_met_neg <- add_single_track(
data = track_data_gr(
data_met_gr_neg, chromosomeField = 'seqnames',
genomicFields = c('start','end'), value = 'cov_value'
),
mark = 'bar',
x = visual_channel_x(
field = 'start', type = 'genomic', axis = 'none'
),
xe = visual_channel_x(
field = 'end', type = 'genomic', axis = 'none'
),
y = visual_channel_y(
field = 'cov_value', type = 'quantitative', axis = 'none', flip = TRUE
), color = 'red',
color = visual_channel_color(
field = 'cov_value',
type = 'quantitative'
#legend = TRUE
),
style = default_track_styles(inlineLegend = TRUE, legendTitle = 'cnv', linkStyle = 'circular'),
tooltip = visual_channel_tooltips(
visual_channel_tooltip(field = "start", type = "genomic",
alt = "Start position:"),
visual_channel_tooltip(field = "end", type = "genomic",
alt = "End Position:"),
visual_channel_tooltip(
field = "cov_value",
title = "cnv",
type = "quantitative",
alt = "CNV Value:",
format = "0.2"
),
visual_channel_tooltip(
field = 'gene',
type = 'nominal',
alt = 'Gene Name:'
)
),
size = list(value = 2)
)
`
Expected behavior
inversion of the y axis
Attachments
No response
Screenshots or Videos
No response
Additional Information
No response
Guidelines
Project Version
all
Platform and OS Version
Ubuntu 22.04
Existing Issues
no
What happened?
The flip argument of the visual_channel_y function does not work, while in gosling.js it works pretty well
Steps to reproduce
`
track_met_neg <- add_single_track(
data = track_data_gr(
data_met_gr_neg, chromosomeField = 'seqnames',
genomicFields = c('start','end'), value = 'cov_value'
),
mark = 'bar',
x = visual_channel_x(
field = 'start', type = 'genomic', axis = 'none'
),
xe = visual_channel_x(
field = 'end', type = 'genomic', axis = 'none'
),
y = visual_channel_y(
field = 'cov_value', type = 'quantitative', axis = 'none', flip = TRUE
), color = 'red',
color = visual_channel_color(
field = 'cov_value',
type = 'quantitative'
#legend = TRUE
),
style = default_track_styles(inlineLegend = TRUE, legendTitle = 'cnv', linkStyle = 'circular'),
tooltip = visual_channel_tooltips(
visual_channel_tooltip(field = "start", type = "genomic",
alt = "Start position:"),
visual_channel_tooltip(field = "end", type = "genomic",
alt = "End Position:"),
visual_channel_tooltip(
field = "cov_value",
title = "cnv",
type = "quantitative",
alt = "CNV Value:",
format = "0.2"
),
visual_channel_tooltip(
field = 'gene',
type = 'nominal',
alt = 'Gene Name:'
)
),
size = list(value = 2)
)
`
Expected behavior
inversion of the y axis
Attachments
No response
Screenshots or Videos
No response
Additional Information
No response