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| 1 | +--- |
| 2 | +title: "CRAN comments" |
| 3 | +--- |
| 4 | +## Resubmission |
| 5 | + |
| 6 | +This is a resubmission following CRAN's feedback dated [23/12/2025]. |
| 7 | + |
| 8 | +This is an update after the earlier CRAN releases, ver 1.0.0 and now 1.0.1. |
| 9 | +The package was removed from CRAN on December 12, 2025, due to two errors on |
| 10 | +the r-devel-linux-x86_64-fedora-clang platform. These included OMP threads and |
| 11 | +duckdb errors, all from the vignettes during package testing. |
| 12 | +I have accordingly addressed them in the following ways. |
| 13 | + |
| 14 | +### 1. OpenMP and number of thread errors. |
| 15 | + |
| 16 | +OMP: Warning #96: Cannot form a team with 24 threads, using 2 instead. |
| 17 | +OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set). |
| 18 | +[gannet:3215232:0:3215232] Caught signal 11 (Segmentation fault: Sent by the kernel at address (nil)) |
| 19 | + |
| 20 | +- This error emanated from the isolation.forest function from the isotree package that sets nthreads = parallel::detectCores(). |
| 21 | +I solved it by setting the number of threads to 1, which prevents the indiscriminate allocation of threads based on detectCores(), a default setting made by the isotree package developer. |
| 22 | + |
| 23 | +### 2. duckdb errors |
| 24 | + |
| 25 | +! error in evaluating the argument 'conn' in selecting a method for function 'dbGetQuery': Invalid Error: Invalid Input Error: |
| 26 | + |
| 27 | +I solved it by incorporating the test dataset with the package and commented out the getdata function from vignettes |
| 28 | +that instates the errors on the platform. The getdata function is based on rgbif, rinat, and rvertnet. During that download, |
| 29 | +the data providers' access to DuckDB, but possibly the settings used are not compliant with the Linux platform, |
| 30 | +which raised the errors. |
| 31 | + |
| 32 | +## Minor chnages |
| 33 | + |
| 34 | +Minor chnages were also implemented including |
| 35 | +- Upgrading RoxygenNote: 7.3.3 from RoxygenNote: 7.3.2 |
| 36 | + |
| 37 | +## Reverse dependencies |
| 38 | + |
| 39 | +No reverse dependencies |
| 40 | + |
| 41 | +## R CMD check results |
| 42 | +0 errors ✔ | 0 warnings ✔ | 0 notes ✔ |
| 43 | + |
| 44 | +* This is a resubmission. |
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