From 628e1abc548b90581ff3467c0dd667af29c788c2 Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Wed, 18 Mar 2026 15:07:30 -0500 Subject: [PATCH 1/2] restore FAQ for downloading programmatically --- docs/faq.md | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/docs/faq.md b/docs/faq.md index 963ad85..5a1f860 100644 --- a/docs/faq.md +++ b/docs/faq.md @@ -298,6 +298,11 @@ This package allows you to search for and download data from the ScPCA Portal di Please see the [package documentation](https://alexslemonade.github.io/ScPCAr/) for more details about installation and usage. Source code for the package can be found on [GitHub](https://github.com/AlexsLemonade/ScPCAr). +We provide an R package, [`ScPCAr`](https://alexslemonade.github.io/ScPCAr/), to facilitate programmatic access to the ScPCA Portal. +This package allows you to search for and download data from the ScPCA Portal directly within R. +Please see the [package documentation](https://alexslemonade.github.io/ScPCAr/) for more details about installation and usage. +Source code for the package can be found on [GitHub](https://github.com/AlexsLemonade/ScPCAr). + When creating a {ref}`custom dataset for download` (`My Dataset`), all single-cell sample or project data included must be of the same {ref}`data format`, either `SingleCellExperiment` for use in R or `AnnData` for use in Python. We currently do not support including both data formats at once in `My Dataset`. Once a sample or project of a given data format has been added to `My Dataset`, all subsequent single-cell or single-nuclei data added will automatically be in that same format. From 4891fbaa989e946afa9b89990b60260b2b97990b Mon Sep 17 00:00:00 2001 From: Ally Hawkins Date: Wed, 18 Mar 2026 15:09:17 -0500 Subject: [PATCH 2/2] move FAQ title --- docs/faq.md | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/docs/faq.md b/docs/faq.md index 5a1f860..337ab30 100644 --- a/docs/faq.md +++ b/docs/faq.md @@ -291,17 +291,13 @@ Download links expire in 7 days, but you can generate a new link on the ScPCA Po Download links are only available for projects (i.e., not for downloading individual samples). ## Can I download data from the Portal programmatically? -## Why can't I change the data format in My Dataset? We provide an R package, [`ScPCAr`](https://alexslemonade.github.io/ScPCAr/), to facilitate programmatic access to the ScPCA Portal. This package allows you to search for and download data from the ScPCA Portal directly within R. Please see the [package documentation](https://alexslemonade.github.io/ScPCAr/) for more details about installation and usage. Source code for the package can be found on [GitHub](https://github.com/AlexsLemonade/ScPCAr). -We provide an R package, [`ScPCAr`](https://alexslemonade.github.io/ScPCAr/), to facilitate programmatic access to the ScPCA Portal. -This package allows you to search for and download data from the ScPCA Portal directly within R. -Please see the [package documentation](https://alexslemonade.github.io/ScPCAr/) for more details about installation and usage. -Source code for the package can be found on [GitHub](https://github.com/AlexsLemonade/ScPCAr). +## Why can't I change the data format in My Dataset? When creating a {ref}`custom dataset for download` (`My Dataset`), all single-cell sample or project data included must be of the same {ref}`data format`, either `SingleCellExperiment` for use in R or `AnnData` for use in Python. We currently do not support including both data formats at once in `My Dataset`.