diff --git a/analyses/infercnv-consensus-cell-type/exploratory-notebooks/reference-query-counts.nb.html b/analyses/infercnv-consensus-cell-type/exploratory-notebooks/reference-query-counts.nb.html index 4d6cb461d..00ff022e6 100644 --- a/analyses/infercnv-consensus-cell-type/exploratory-notebooks/reference-query-counts.nb.html +++ b/analyses/infercnv-consensus-cell-type/exploratory-notebooks/reference-query-counts.nb.html @@ -11,7 +11,7 @@ - + Diagnoses and cell types @@ -1750,7 +1750,7 @@

Diagnoses and cell types

Stephanie J. Spielman

-

2025-10-16

+

2026-02-05

@@ -1989,10 +1989,10 @@

Analysis

usable_counts_df - +
@@ -2028,8 +2028,8 @@

Analysis

sum(library_counts_df$reference >= params$n_reference_threshold) / total_libraries
- -
[1] 0.4986111
+ +
[1] 0.5180556
@@ -2046,10 +2046,10 @@

Analysis

fewer_query_df - +
@@ -2067,10 +2067,10 @@

Analysis

dplyr::count(scpca_library_id, validation_group_annotation) |> dplyr::arrange(scpca_library_id) - +
@@ -2136,7 +2136,7 @@

Plot cell types

) -

+

@@ -2168,10 +2168,10 @@

Session Info

# record the versions of the packages used in this analysis and other environment information
 sessionInfo()
- +
R version 4.4.0 (2024-04-24)
 Platform: aarch64-apple-darwin20
-Running under: macOS 15.6.1
+Running under: macOS 15.5
 
 Matrix products: default
 BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib