I noticed that we have a file consensus-immune-celltypes.tsv that has not been updated since we updated the consensus cell types to include SCimilarity. This was generated manually when we were doing some exploratory analysis on the Brain and CNS samples.
We were using this to generate the immune barplot in the paper (but I'm hoping to remove that dependency in AlexsLemonade/scpca-paper-figures#397). I'm not able to find any other scenarios where we use the file, but just in case, we should make sure it is up to date.
I noticed that we have a file
consensus-immune-celltypes.tsvthat has not been updated since we updated the consensus cell types to includeSCimilarity. This was generated manually when we were doing some exploratory analysis on the Brain and CNS samples.We were using this to generate the immune barplot in the paper (but I'm hoping to remove that dependency in AlexsLemonade/scpca-paper-figures#397). I'm not able to find any other scenarios where we use the file, but just in case, we should make sure it is up to date.