From e7b330fb70eeb675d21d55785548893690b9cc67 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Thu, 4 Nov 2021 10:09:01 -0500 Subject: [PATCH] Discovery performed 11/3/21 * Number of cases renamed to format like GTEX-RU72-0011-R10A-SM-HAKXS --- CPTAC3.Catalog.Summary.dat | 18 +++++------ CPTAC3.Catalog.dat | 61 ++++++++++++++++++++++++++++++++++++++ CPTAC3.Demographics.dat | 9 ++++++ 3 files changed, 79 insertions(+), 9 deletions(-) diff --git a/CPTAC3.Catalog.Summary.dat b/CPTAC3.Catalog.Summary.dat index 6b82150..b554943 100644 --- a/CPTAC3.Catalog.Summary.dat +++ b/CPTAC3.Catalog.Summary.dat @@ -4404,13 +4404,13 @@ C760878 GBM WGS.hg19 T WXS.hg19 T N RNA.fq TT miRNA.fq C761370 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C827913 GBM WGS.hg19 N WXS.hg19 N RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C846363 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-NPJ7 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-P44H GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +GTEX-NPJ7-0011-R10A-SM-HAKXW GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-P44H-0011-R10A-SM-HAKXX GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray PT-Q2AG GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 MethArray -PT-QVJO GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-R55F GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-RN5K GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-RU72 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-UTHO GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-WVLH GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -PT-Y8DK GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +GTEX-QVJO-0011-R10A-SM-HAKXV GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 MethArray +GTEX-R55F-0011-R10A-SM-HAKXY GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-RN5K-0011-R10A-SM-HAKXU GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-RU72-0011-R10A-SM-HAKXS GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-UTHO-0011-R10A-SM-HAKY2 GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-WVLH-0011-R10A-SM-HAKXZ GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray +GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM WGS.hg19 WXS.hg19 RNA.fq AA miRNA.fq A WGS.hg38 WXS.hg38 RNA.hg38 AAA miRNA.hg38 A MethArray diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 7e95f0c..f8b24ca 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -37357,8 +37357,69 @@ C846363.WGS.T C846363 GBM WGS tumor 7316UP-2100-1105219 7316UP-2100-1105219.Whol C846363.WXS.N C846363 GBM WXS blood_normal 7316UP-2100-1105216 7316UP-2100-1105216.WholeExome.RP-1303.bam 29207285501 BAM NA bd45cd04-f40e-405e-9bc2-1c42e8614cb1 4b81d4fab0d67c8ccd13a92280b158a9 hg19 Blood Derived Normal 1105216 C846363.WXS.R C846363 GBM WXS recurrent_tumor 7316UP-2843-1105244 7316UP-2843-1105244.WholeExome.RP-1303.bam 23343495743 BAM NA b8590e83-d959-46b0-90aa-88bc644962fc f99e05802a978632cdb7d8a20b23ba84 hg19 Recurrent Tumor 1105244 C846363.WXS.T C846363 GBM WXS tumor 7316UP-2100-1105219 7316UP-2100-1105219.WholeExome.RP-1303.bam 15815239997 BAM NA 57b43f3a-59cf-4057-9240-5c0965ff2f09 caa81a2c6b3a25623daaf3b4e3918b00 hg19 Primary Tumor 1105219 +GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTAGAG_S46_L004_R1_001.unaln.bam 164935939 BAM NA b04dd504-b320-4b74-8b55-245d542a1591 99204b51c7bca4b47061d2e1b9ab03a7 NA Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.miRNA-Seq.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM miRNA-Seq tissue_normal CPT0286590000 59a32933-dcc8-4347-b3ea-ac4f0b41a1ed_mirnaseq_gdc_realn.bam 186345250 BAM NA 8d438eb7-7ede-4df3-9f1e-47063e2c0428 5297814bbb233db6b16068da94dcac73 hg38 Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.chimeric.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 59d64612-5d47-499c-95ff-0b95e0826a4c.rna_seq.chimeric.gdc_realn.bam 59049482 BAM chimeric deabb2b1-898f-43f4-b617-e36f1295e626 09d1c4494bd034e1a780aa14054d3d78 hg38 Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.genomic.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 59d64612-5d47-499c-95ff-0b95e0826a4c.rna_seq.genomic.gdc_realn.bam 8041144276 BAM genomic d18a6fce-a1bb-4f12-a745-d862c87e4f65 ce87b1f090194829699649fb32035075 hg38 Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R1.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R1_001.fastq.gz 3765743130 FASTQ NA bc06c745-5e1d-4360-98b5-5932622e5ad6 f8bdda1f1e5572a24b4ee3ce7b40fcd2 NA Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.R2.A GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 190702_UNC32-K00270_0187_AH7FK2BBXY_GCTTGTCA-GAACATAC_S13_L005_R2_001.fastq.gz 4079829284 FASTQ NA 0c2c947c-f8b3-4cf4-aa09-c4a484c21efc 293130ebc12c8588458aa3f0f66623e9 NA Solid Tissue Normal PT-NPJ7-01 +GTEX-NPJ7-0011-R10A-SM-HAKXW.RNA-Seq.transcriptome.A.hg38 GTEX-NPJ7-0011-R10A-SM-HAKXW GBM RNA-Seq tissue_normal CPT0286590000 59d64612-5d47-499c-95ff-0b95e0826a4c.rna_seq.transcriptome.gdc_realn.bam 8636131391 BAM transcriptome bcc31411-c883-419c-bd42-cd182f877466 ff461d09a52ffa1986deb3d36c550b30 hg38 Solid Tissue Normal PT-NPJ7-01 +GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGGCC_S5_L004_R1_001.unaln.bam 232944125 BAM NA 9215c9ae-265c-4863-b79c-2cefb9211a3b c4a772d8bfe747d235d6b36ef231b54f NA Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.miRNA-Seq.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM miRNA-Seq tissue_normal CPT0286600000 a1dfef8b-8633-4127-8bf3-ffb0038d94c3_mirnaseq_gdc_realn.bam 255528989 BAM NA 043612f4-af3a-4875-9e05-73a0cca6e184 3e850f62007829c7133df2f20422b51c hg38 Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.chimeric.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 04b5846d-dc37-4f90-91e7-01ad367ee711.rna_seq.chimeric.gdc_realn.bam 66571003 BAM chimeric d776a618-26a5-4018-a979-2dba4d0c9c75 3530cd533255b35701bd88424a409015 hg38 Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.genomic.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 04b5846d-dc37-4f90-91e7-01ad367ee711.rna_seq.genomic.gdc_realn.bam 7999145120 BAM genomic 3c4b64ce-c8b1-40b1-925c-8f481f8269d5 9b9203e89e7046de1065a5b2b3eda754 hg38 Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R1.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R1_001.fastq.gz 3585455144 FASTQ NA eaee871f-6c1c-4b68-ae45-c02b26e03112 e43d9aa30db9773c7ec59aa287f8987c NA Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.R2.A GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 190715_UNC31-K00269_0232_BH7H7CBBXY_AGTTCAGG-CCAACAGA_S14_L004_R2_001.fastq.gz 3823964368 FASTQ NA ac5d5942-5109-443b-a92f-a2cc70ea4764 03b608c12f6090518048609ae436d54a NA Solid Tissue Normal PT-P44H-01 +GTEX-P44H-0011-R10A-SM-HAKXX.RNA-Seq.transcriptome.A.hg38 GTEX-P44H-0011-R10A-SM-HAKXX GBM RNA-Seq tissue_normal CPT0286600000 04b5846d-dc37-4f90-91e7-01ad367ee711.rna_seq.transcriptome.gdc_realn.bam 10611620851 BAM transcriptome 46db3edb-9f60-4665-8401-abf9275e81aa 5ca1af7ae75d9acab8bea56c463e7079 hg38 Solid Tissue Normal PT-P44H-01 PT-Q2AG.RNA-Seq.chimeric.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.chimeric.gdc_realn.bam 520151066 BAM chimeric bafd4b94-94e6-4e1f-8b6e-05330da3362c 9a13707828ab03751b781c2946e9f019 hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.genomic.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.genomic.gdc_realn.bam 13360810828 BAM genomic 4393dcd0-75c6-42e6-8db6-3d8321d724bd c41c144ea11705e4e393473a5a9f3003 hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.R1.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R1_001.fastq.gz 5898206072 FASTQ NA 624298d8-62b5-48e2-8dbb-114aa81b99b3 daa12bbc628c67bbe970376515961d18 NA Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.R2.A PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 201030_UNC32-K00270_0263_AHJ7K3BBXY_CCGCGGTT-AGCGCTAG_S8_L003_R2_001.fastq.gz 6587430382 FASTQ NA 0fce5ae6-0a02-4802-8167-dd6405540e55 ad0d73b84334fddc373c6386f45998d8 NA Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU PT-Q2AG.RNA-Seq.transcriptome.A.hg38 PT-Q2AG GBM RNA-Seq tissue_normal CPT0285080000 71d17708-12a4-41ef-8258-a65c5cb01c57.rna_seq.transcriptome.gdc_realn.bam 21046952385 BAM transcriptome a3231b5e-b6ed-464b-bff1-4d370cb8cc9e 8e3a0ad7a991e352c1d9a98d27303c9b hg38 Solid Tissue Normal GTEX-Q2AG-0011-R10A-SM-J3EVU +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.chimeric.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 4aba1ae0-7e2b-45ca-95fe-e9c661219ebc.rna_seq.chimeric.gdc_realn.bam 42742803 BAM chimeric 267f59f7-f5c1-45ec-8db4-3fb9c699fb5e efaf4b65e44769d3da2b3f6c1d028832 hg38 Solid Tissue Normal PT-QVJO-01 +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.genomic.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 4aba1ae0-7e2b-45ca-95fe-e9c661219ebc.rna_seq.genomic.gdc_realn.bam 7208517654 BAM genomic 1c8063ff-49b5-4a6e-bb47-693850a55bef 3d52bf609a02ae2791696d5b80f95794 hg38 Solid Tissue Normal PT-QVJO-01 +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R1.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R1_001.fastq.gz 3415853912 FASTQ NA 3c47d5e3-b037-4bc6-80c2-eba31eeb58e0 1142a485efe83ea669c4dc28c77eeae2 NA Solid Tissue Normal PT-QVJO-01 +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.R2.A GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 190702_UNC32-K00270_0187_AH7FK2BBXY_GGACTTGG-CGCAGACG_S20_L006_R2_001.fastq.gz 3709398511 FASTQ NA 222a2d66-7b96-4170-bf35-7b9c23d8953f 14cbbfc67bde2f79877cd7e8c927d607 NA Solid Tissue Normal PT-QVJO-01 +GTEX-QVJO-0011-R10A-SM-HAKXV.RNA-Seq.transcriptome.A.hg38 GTEX-QVJO-0011-R10A-SM-HAKXV GBM RNA-Seq tissue_normal CPT0286560000 4aba1ae0-7e2b-45ca-95fe-e9c661219ebc.rna_seq.transcriptome.gdc_realn.bam 7202825353 BAM transcriptome 72c3aa9a-4d92-4e59-9b74-e4c6f4b05230 24afea6c0f0d7db8707ab7291830b4e1 hg38 Solid Tissue Normal PT-QVJO-01 +GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 190813_UNC32-K00270_0196_AH5MCWBBXY_AGTCAA_S42_L004_R1_001.unaln.bam 353147146 BAM NA 46fdcb55-7313-4293-981a-ee424abf1681 57cbe3e56107a6921f3f3651e96ba6c4 NA Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.miRNA-Seq.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM miRNA-Seq tissue_normal CPT0286550000 fd4e6d5f-3714-4791-9122-7a56650788b5_mirnaseq_gdc_realn.bam 403589976 BAM NA a51bec4b-ffa3-4c69-ac7d-d35fc070a93f 50f6f67ce92a34daa193d2f63f30514c hg38 Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.chimeric.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 44f11b05-0dad-4b09-bbd0-00e568a81cd6.rna_seq.chimeric.gdc_realn.bam 104135660 BAM chimeric e0c64208-dba2-436a-bda4-aa9e458f994e 2e4453d302a4fdc32ea48c8ea9721687 hg38 Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.genomic.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 44f11b05-0dad-4b09-bbd0-00e568a81cd6.rna_seq.genomic.gdc_realn.bam 9803953238 BAM genomic d3ee1d1a-979a-4dfa-a197-2cb019b2e356 f5b89e928ddb98ef8a605fe1f2125975 hg38 Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R1.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R1_001.fastq.gz 4465868783 FASTQ NA ebbf052b-938b-4978-87bb-e203ecd9ea8d e0733607fd2f05ad4932dd4d8cc6f597 NA Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.R2.A GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 190702_UNC32-K00270_0187_AH7FK2BBXY_TTATAACC-GATATCGA_S17_L006_R2_001.fastq.gz 4376071746 FASTQ NA 5493009c-4e84-42d1-845e-f597e8538bdf aaec4180b35509ed2ed4785de4a4a201 NA Solid Tissue Normal PT-R55F-01 +GTEX-R55F-0011-R10A-SM-HAKXY.RNA-Seq.transcriptome.A.hg38 GTEX-R55F-0011-R10A-SM-HAKXY GBM RNA-Seq tissue_normal CPT0286550000 44f11b05-0dad-4b09-bbd0-00e568a81cd6.rna_seq.transcriptome.gdc_realn.bam 9088385860 BAM transcriptome 80f6b417-f920-43ed-bc9d-755b355c7ad1 abc812cf9a1c6a905174224eb288d915 hg38 Solid Tissue Normal PT-R55F-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 190813_UNC32-K00270_0196_AH5MCWBBXY_CTTGTA_S41_L004_R1_001.unaln.bam 362426253 BAM NA 206ee6f5-9a67-413f-bf39-6973090d9318 a32c794f0004c67d13834a8a4ec2d67a NA Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.miRNA-Seq.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM miRNA-Seq tissue_normal CPT0286540000 bec258dd-30cd-4908-b5f9-e00bf74e3cb9_mirnaseq_gdc_realn.bam 402752717 BAM NA 4ba89b6f-5b90-4449-987b-9ffaf6553cf2 16544569a2c93fbf721ae36eec78a069 hg38 Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.chimeric.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 72a8f016-8990-40a4-ba9b-30fe0f77c850.rna_seq.chimeric.gdc_realn.bam 157315874 BAM chimeric a8c16f51-aa1d-40c0-affa-1e2c84a33f65 49e17a12a0fca8d026347a0a03a76c16 hg38 Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.genomic.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 72a8f016-8990-40a4-ba9b-30fe0f77c850.rna_seq.genomic.gdc_realn.bam 11743988611 BAM genomic acb37ba0-55c3-450b-9800-c5c358fce861 4761dc382181d2904eae93de0aa4ca0c hg38 Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R1.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R1_001.fastq.gz 5085066252 FASTQ NA ae85444e-59ad-43b5-bab7-4c138b7291af ad92a12cdcb9075829349f6c7ae37196 NA Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.R2.A GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 190702_UNC32-K00270_0187_AH7FK2BBXY_CCGCGGTT-AGCGCTAG_S18_L006_R2_001.fastq.gz 5392721495 FASTQ NA 41592dab-9730-40dc-8c7a-1c164445e2fc c83c21e32099a08875aa8a1c13fee84e NA Solid Tissue Normal PT-RN5K-01 +GTEX-RN5K-0011-R10A-SM-HAKXU.RNA-Seq.transcriptome.A.hg38 GTEX-RN5K-0011-R10A-SM-HAKXU GBM RNA-Seq tissue_normal CPT0286540000 72a8f016-8990-40a4-ba9b-30fe0f77c850.rna_seq.transcriptome.gdc_realn.bam 9440292258 BAM transcriptome acd51fc6-a511-401c-9ed3-cfa21bcad4be fbe7929305bbe126539a7a237459e0af hg38 Solid Tissue Normal PT-RN5K-01 +GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTCCGC_S3_L004_R1_001.unaln.bam 216076917 BAM NA f8569758-ef9d-4d7c-bc10-2b2e8278dc5e bd6f1b1e46ab00c5a272389f9b35c476 NA Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.miRNA-Seq.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM miRNA-Seq tissue_normal CPT0286620000 6d2665ea-80dc-47cc-86ee-0689f34bacac_mirnaseq_gdc_realn.bam 241146961 BAM NA 73a5dc2c-3604-4360-a23c-c417a43b8f52 e891e693b2cbc468fb1d0097d16e7c20 hg38 Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.chimeric.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 e0e1dbad-4411-4abc-bd21-8727ee29d9d5.rna_seq.chimeric.gdc_realn.bam 66713842 BAM chimeric 2aadf658-d405-40bd-87c7-b373d15d4ad1 e1833bedf114decdbafa2fbc3a28e0fd hg38 Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.genomic.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 e0e1dbad-4411-4abc-bd21-8727ee29d9d5.rna_seq.genomic.gdc_realn.bam 9465270184 BAM genomic df1afa0f-5a5e-4de2-96df-eb62b45845cc 208dcafa4e77898279f3efcd58a690dd hg38 Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R1.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R1_001.fastq.gz 4343747954 FASTQ NA 991c731a-f70e-46c6-82f8-fe5b1c4f2014 4e46a4a777ab0eaaf2339dd94a0ac815 NA Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.R2.A GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 190702_UNC32-K00270_0187_AH7FK2BBXY_CAAGCTAG-ACATAGCG_S16_L005_R2_001.fastq.gz 4681867735 FASTQ NA 169530bc-e43c-40b8-938d-55fc0c5afbb2 191d575dd05a76e0f293cdb4474a4c83 NA Solid Tissue Normal PT-RU72-01 +GTEX-RU72-0011-R10A-SM-HAKXS.RNA-Seq.transcriptome.A.hg38 GTEX-RU72-0011-R10A-SM-HAKXS GBM RNA-Seq tissue_normal CPT0286620000 e0e1dbad-4411-4abc-bd21-8727ee29d9d5.rna_seq.transcriptome.gdc_realn.bam 8790656568 BAM transcriptome 2b667beb-eeab-40c9-bdfc-06ced22caa4c af4f6e2bc402233e985e1edf16ffa91e hg38 Solid Tissue Normal PT-RU72-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 190813_UNC32-K00270_0196_AH5MCWBBXY_ATGTCA_S44_L004_R1_001.unaln.bam 222201696 BAM NA 88011b61-b19a-4364-92dc-6bc5016b3431 4154040b94c7f71641e1e34aeb3df546 NA Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.miRNA-Seq.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM miRNA-Seq tissue_normal CPT0286570000 9b53c058-3e78-447b-bf8a-3ebd67b36176_mirnaseq_gdc_realn.bam 261541459 BAM NA 4a26be34-750c-41cf-ab2e-db70e3b1343f 93f7413eb052a2026331584c8ce2b968 hg38 Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.chimeric.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 6a9ce53f-2f79-45db-958f-869ae019f324.rna_seq.chimeric.gdc_realn.bam 44411194 BAM chimeric 1a91667a-944a-4a8d-bbb8-2a8d896d3fc7 84c2e64ff2a93770edcd028006b674a6 hg38 Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.genomic.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 6a9ce53f-2f79-45db-958f-869ae019f324.rna_seq.genomic.gdc_realn.bam 6965486913 BAM genomic eb9b2560-de68-44f4-86fe-2c110e6faf34 5260ec1bf9c9ed34b3adb9e060850960 hg38 Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R1.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R1_001.fastq.gz 3264885576 FASTQ NA 440b3a6f-55b1-4a6e-b60f-875dff4a1648 9096833e0ea58b49e95ffd713f9cc04c NA Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.R2.A GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 190702_UNC32-K00270_0187_AH7FK2BBXY_AAGTCCAA-TATGAGTA_S15_L005_R2_001.fastq.gz 3488807105 FASTQ NA f64b4605-5731-4f25-b62a-c0bb5e52402e e3f6403767708b7208df0fed4d20452a NA Solid Tissue Normal PT-UTHO-01 +GTEX-UTHO-0011-R10A-SM-HAKY2.RNA-Seq.transcriptome.A.hg38 GTEX-UTHO-0011-R10A-SM-HAKY2 GBM RNA-Seq tissue_normal CPT0286570000 6a9ce53f-2f79-45db-958f-869ae019f324.rna_seq.transcriptome.gdc_realn.bam 6335954651 BAM transcriptome a63bcf64-9f41-4aa8-9011-a19d0c914862 fac8c5c8469584a506209ceaad5f4e21 hg38 Solid Tissue Normal PT-UTHO-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 190828_UNC32-K00270_0200_BH7GVJBBXY_GTTTCG_S143_L008_R1_001.unaln.bam 283348378 BAM NA a47b8637-33a3-4e49-8897-a5b08fec15de b0c874e7cb87ae81397803412e1d0c0a NA Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.miRNA-Seq.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM miRNA-Seq tissue_normal CPT0286610000 34c82ef7-3cfc-4161-89b4-9b20f770af83_mirnaseq_gdc_realn.bam 320278768 BAM NA e9c05438-5dc3-4a20-8256-2086a96ef3e6 08b53e7ff898f19df423240b3614f853 hg38 Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.chimeric.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 85f86ddc-bc69-45f1-81cf-8120f8981f75.rna_seq.chimeric.gdc_realn.bam 69176333 BAM chimeric 28b99b7d-113f-40f6-a517-3022ddf3b1e6 5cb13faf0e3eed98d582dcc4fdf06c50 hg38 Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.genomic.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 85f86ddc-bc69-45f1-81cf-8120f8981f75.rna_seq.genomic.gdc_realn.bam 8912973871 BAM genomic 0205bb8d-9a2c-402d-b289-a25c538620a3 5ce7e6d1b9fd89778c15e91c34db6804 hg38 Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R1.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R1_001.fastq.gz 4306549496 FASTQ NA cdf168a3-2eb6-4368-bf54-f23950626b10 b747d1bfc7eae3c1a2398a28dd15b788 NA Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.R2.A GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 190715_UNC31-K00269_0232_BH7H7CBBXY_GACCTGAA-TTGGTGAG_S15_L004_R2_001.fastq.gz 4425085797 FASTQ NA aec464aa-f28d-407d-a76f-869a3121d472 d079a6542e3381afde42c39e4e43dacf NA Solid Tissue Normal PT-WVLH-01 +GTEX-WVLH-0011-R10A-SM-HAKXZ.RNA-Seq.transcriptome.A.hg38 GTEX-WVLH-0011-R10A-SM-HAKXZ GBM RNA-Seq tissue_normal CPT0286610000 85f86ddc-bc69-45f1-81cf-8120f8981f75.rna_seq.transcriptome.gdc_realn.bam 15506078884 BAM transcriptome 693f320a-b519-4bc8-a7c9-a675f7a8daac bd2e963ae1e0177ffb8242a60a72f1d7 hg38 Solid Tissue Normal PT-WVLH-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 190813_UNC32-K00270_0196_AH5MCWBBXY_GTGAAA_S4_L004_R1_001.unaln.bam 352802300 BAM NA 14842e9b-1fa3-423c-9e35-8a3ab1163b20 c72b90870ab495f5969953ea1103d188 NA Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.miRNA-Seq.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM miRNA-Seq tissue_normal CPT0286630000 5be949d3-314a-4699-8cfc-c62cbbc00736_mirnaseq_gdc_realn.bam 421417241 BAM NA fcbf1822-3a29-4f5f-b6f0-0bcb37d8b165 82ec6745b18d8b671eb1f25d5a08c81c hg38 Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.chimeric.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 dbc1bc06-3d81-4bd7-a3f3-b63a347e8473.rna_seq.chimeric.gdc_realn.bam 92514808 BAM chimeric 1b674971-2952-4e1f-87ee-6428dc412575 4b7533fa2cb0089fe730904909baf93c hg38 Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.genomic.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 dbc1bc06-3d81-4bd7-a3f3-b63a347e8473.rna_seq.genomic.gdc_realn.bam 10267609975 BAM genomic 56e11ff6-3e61-4727-a4de-e40a28329f32 9b3de0d7cf7a3ff9a85be06173f4ac11 hg38 Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R1.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R1_001.fastq.gz 4854888143 FASTQ NA 682b4036-c822-40d0-9662-2c18077f8493 eb02f8ffcd30f1698dfff8249c6f1e4e NA Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.R2.A GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 190715_UNC31-K00269_0232_BH7H7CBBXY_TGGATCGA-GTGCGATA_S13_L004_R2_001.fastq.gz 5090597822 FASTQ NA 43e9394a-420b-4a99-907a-2f0a293a9f1c 18d6aeee1c0f9ee6f99474eb9695c62b NA Solid Tissue Normal PT-Y8DK-01 +GTEX-Y8DK-0011-R10A-SM-HAKY1.RNA-Seq.transcriptome.A.hg38 GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM RNA-Seq tissue_normal CPT0286630000 dbc1bc06-3d81-4bd7-a3f3-b63a347e8473.rna_seq.transcriptome.gdc_realn.bam 16356123676 BAM transcriptome f446d9ea-180a-42bd-848a-be859944dd38 9afaa57b4a2d951a5259162bdb6e50ab hg38 Solid Tissue Normal PT-Y8DK-01 diff --git a/CPTAC3.Demographics.dat b/CPTAC3.Demographics.dat index 8e4698c..16a8e23 100644 --- a/CPTAC3.Demographics.dat +++ b/CPTAC3.Demographics.dat @@ -1625,3 +1625,12 @@ C3N-05919 HNSCC not reported male not reported -17730 C3N-05923 LSCC not reported female not reported -27298 C3N-05929 LSCC not reported male not reported -28182 C3N-05991 GBM not reported male not reported -10474 +GTEX-NPJ7-0011-R10A-SM-HAKXW GBM not reported female white null +GTEX-P44H-0011-R10A-SM-HAKXX GBM not reported male white null +GTEX-QVJO-0011-R10A-SM-HAKXV GBM not hispanic or latino female white null +GTEX-R55F-0011-R10A-SM-HAKXY GBM not hispanic or latino male white null +GTEX-RN5K-0011-R10A-SM-HAKXU GBM not hispanic or latino female white null +GTEX-RU72-0011-R10A-SM-HAKXS GBM Unknown female asian null +GTEX-UTHO-0011-R10A-SM-HAKY2 GBM Unknown male white null +GTEX-WVLH-0011-R10A-SM-HAKXZ GBM Unknown male white null +GTEX-Y8DK-0011-R10A-SM-HAKY1 GBM not hispanic or latino male white null