diff --git a/BamMap/katmai.BamMap.dat b/BamMap/katmai.BamMap.dat index cf0cff2..f1550e8 100644 --- a/BamMap/katmai.BamMap.dat +++ b/BamMap/katmai.BamMap.dat @@ -395,16 +395,25 @@ C3L-00102.WGS.N.hg38 C3L-00102 PDA WGS blood_normal /diskmnt/Projects/cptac_down C3L-00102.WGS.T.hg38 C3L-00102 PDA WGS tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f122b006-ac29-4911-bbfa-05d08b8f35d8/945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 265771172683 BAM hg38 f122b006-ac29-4911-bbfa-05d08b8f35d8 katmai C3L-00102.WXS.N.hg38 C3L-00102 PDA WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/a4c9d5ea-87f2-4812-bf9e-2a21e0fbd265/b6b55db6-b2f3-4d98-b1d1-3958bf5ae28f_gdc_realn.bam 46868278690 BAM hg38 a4c9d5ea-87f2-4812-bf9e-2a21e0fbd265 katmai C3L-00102.WXS.T.hg38 C3L-00102 PDA WXS tumor /diskmnt/Projects/cptac/GDC_import/data/e4e743cb-4e2d-4ef3-92e9-b6f538ded0c9/945dbda3-ac53-448a-abd8-96ebc5c55b48_gdc_realn.bam 52210107073 BAM hg38 e4e743cb-4e2d-4ef3-92e9-b6f538ded0c9 katmai +C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1c3e5948-a555-47cc-821c-6ba3f483cda1/204367490030_R02C01_Grn.idat 13677885 IDAT NA 1c3e5948-a555-47cc-821c-6ba3f483cda1 katmai +C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c8b1652b-e7b5-48ae-bdd2-930be43ddaf9/204372030070_R01C01_Grn.idat 13677900 IDAT NA c8b1652b-e7b5-48ae-bdd2-930be43ddaf9 katmai C3L-00103.MethArray.Green.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6/202184990069_R01C01_Grn.idat 13676226 IDAT NA e5910ae5-bb8f-46c6-a1e8-b8da04dcbbc6 katmai +C3L-00103.MethArray.Red.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/236d7ab1-b6c7-466f-b39a-296ef1f3aa74/204367490030_R02C01_Red.idat 13677885 IDAT NA 236d7ab1-b6c7-466f-b39a-296ef1f3aa74 katmai +C3L-00103.MethArray.Red.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b3d1ac80-1afe-4638-a9a5-7565d3d2cf3b/204372030070_R01C01_Red.idat 13677900 IDAT NA b3d1ac80-1afe-4638-a9a5-7565d3d2cf3b katmai C3L-00103.MethArray.Red.T C3L-00103 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a7436b52-d702-4260-a6fc-a81ff78e3bf0/202184990069_R01C01_Red.idat 13676226 IDAT NA a7436b52-d702-4260-a6fc-a81ff78e3bf0 katmai C3L-00103.miRNA-Seq.A C3L-00103 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/61ea1844-e06e-4fb4-87ce-8d14e25427d3/181108_UNC31-K00269_0163_BH23TVBBXY_CACCGG_S30_L004_R1_001.unaln.bam 233112878 BAM NA 61ea1844-e06e-4fb4-87ce-8d14e25427d3 katmai +C3L-00103.miRNA-Seq.T C3L-00103 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/73d38500-a837-4cf8-80f8-8e61a7b49a51/200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L002_R1_001.unaln.bam 261660434 BAM NA 73d38500-a837-4cf8-80f8-8e61a7b49a51 katmai C3L-00103.miRNA-Seq.T C3L-00103 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7326dbe9-1164-434b-a9f2-fc1a2a954d32/181113_UNC31-K00269_0164_AH23NNBBXY_TCATTC_S21_L003_R1_001.unaln.bam 181353878 BAM NA 7326dbe9-1164-434b-a9f2-fc1a2a954d32 katmai C3L-00103.RNA-Seq.genomic.A.hg38 C3L-00103 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/b405a565-e045-4547-a333-75c44b4b7505/87f8ea6a-d7ff-4d20-841b-8a3cdb9f5ba0.rna_seq.genomic.gdc_realn.bam 7553438191 BAM hg38 b405a565-e045-4547-a333-75c44b4b7505 katmai C3L-00103.RNA-Seq.genomic.T.hg38 C3L-00103 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/6d0d76bc-abb6-4458-86db-4613092dc1c0/08659a8b-e74c-45e8-ac69-72d2866db59f.rna_seq.genomic.gdc_realn.bam 9215302719 BAM hg38 6d0d76bc-abb6-4458-86db-4613092dc1c0 katmai C3L-00103.RNA-Seq.R1.A C3L-00103 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/7583c79b-d6d8-4669-b558-0aba2ba67054/171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R1_001.fastq.gz 3754354855 FASTQ NA 7583c79b-d6d8-4669-b558-0aba2ba67054 katmai C3L-00103.RNA-Seq.R1.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0432802d-9155-45bd-90b8-8472a758eaa1/170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R1_001.fastq.gz 4211540733 FASTQ NA 0432802d-9155-45bd-90b8-8472a758eaa1 katmai +C3L-00103.RNA-Seq.R1.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3/200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R1_001.fastq.gz 3714824575 FASTQ NA 4c0823f5-5c3b-4dff-9ae1-40a8210c1fc3 katmai +C3L-00103.RNA-Seq.R1.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7dbef68a-aff2-402b-9665-24668fab5908/200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R1_001.fastq.gz 5570232704 FASTQ NA 7dbef68a-aff2-402b-9665-24668fab5908 katmai C3L-00103.RNA-Seq.R2.A C3L-00103 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/de108ae0-884f-4c53-a4ab-40681988ef5c/171208_UNC32-K00270_0071_BHN7K5BBXX_GCCAAT_S56_L007_R2_001.fastq.gz 4014415458 FASTQ NA de108ae0-884f-4c53-a4ab-40681988ef5c katmai C3L-00103.RNA-Seq.R2.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a37d45d8-1c52-4fd2-906f-d70282c859ec/170818_UNC32-K00270_0050_AHL2FHBBXX_CCGTCC_S7_L002_R2_001.fastq.gz 4462888273 FASTQ NA a37d45d8-1c52-4fd2-906f-d70282c859ec katmai +C3L-00103.RNA-Seq.R2.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7f6794c3-542b-481f-9bfe-dd4781ec781c/200518_UNC32-K00270_0247_AHH573BBXY_CCGCGGTT-AGCGCTAG_S29_L004_R2_001.fastq.gz 6449461194 FASTQ NA 7f6794c3-542b-481f-9bfe-dd4781ec781c katmai +C3L-00103.RNA-Seq.R2.T C3L-00103 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fad68f1e-fa0e-4d25-a822-600c8a10afbb/200519_UNC31-K00269_0280_BHHKGNBBXY_GCCACAGG-CATGCCAT_S19_L005_R2_001.fastq.gz 4342999494 FASTQ NA fad68f1e-fa0e-4d25-a822-600c8a10afbb katmai C3L-00103.WXS.N.hg38 C3L-00103 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/be832dc4-0367-4d5a-aa34-b0dfafecaa92/b35e7696-f8f2-4fdb-a2e7-e6b4842a4674_gdc_realn.bam 30381554017 BAM hg38 be832dc4-0367-4d5a-aa34-b0dfafecaa92 katmai C3L-00103.WXS.T.hg38 C3L-00103 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/01c91555-2c8b-462a-9814-236ea632e22f/c5a3c455-b1f3-4125-a6f5-401385ab2720_gdc_realn.bam 33390644310 BAM hg38 01c91555-2c8b-462a-9814-236ea632e22f katmai C3L-00104.MethArray.Green.T C3L-00104 GBM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c09365e6-ee32-4785-8d0c-fd22eab3a45e/202234360029_R01C01_Grn.idat 13676226 IDAT NA c09365e6-ee32-4785-8d0c-fd22eab3a45e katmai @@ -724,16 +733,26 @@ C3L-00368.RNA-Seq.R2.A C3L-00368 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00368.RNA-Seq.R2.T C3L-00368 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/92f50d80-ee03-419b-bb18-47cb4c997113/170828_UNC31-K00269_0077_AHLF33BBXX_GGCTAC_S8_L008_R2_001.fastq.gz 4616759031 FASTQ NA 92f50d80-ee03-419b-bb18-47cb4c997113 katmai C3L-00368.WXS.N.hg38 C3L-00368 LUAD WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/cb0fb2a7-2c6b-4855-9a62-9350f0683bb8/d377ec75-2e7b-4265-bd4f-f012bf517b81_gdc_realn.bam 44407190653 BAM hg38 cb0fb2a7-2c6b-4855-9a62-9350f0683bb8 katmai C3L-00368.WXS.T.hg38 C3L-00368 LUAD WXS tumor /diskmnt/Projects/cptac/GDC_import/data/85024923-5694-4461-81a3-100f9a44db27/72483032-4ef4-40ef-b2f9-64a56252e57d_gdc_realn.bam 51264266651 BAM hg38 85024923-5694-4461-81a3-100f9a44db27 katmai +C3L-00369.MethArray.Green.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/27e06e8e-4c71-4681-a329-88e8305d4c94/204372030161_R03C01_Grn.idat 13677880 IDAT NA 27e06e8e-4c71-4681-a329-88e8305d4c94 katmai +C3L-00369.MethArray.Green.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f7e8073f-4936-42ef-9785-a3c69db7967b/204372030079_R04C01_Grn.idat 13677880 IDAT NA f7e8073f-4936-42ef-9785-a3c69db7967b katmai C3L-00369.MethArray.Green.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/855b3fba-4d12-4402-bf16-7505e37991b2/202178770083_R02C01_Grn.idat 13676231 IDAT NA 855b3fba-4d12-4402-bf16-7505e37991b2 katmai +C3L-00369.MethArray.Red.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2e740af2-85d3-4aa1-9c41-64c3b4b8a057/204372030161_R03C01_Red.idat 13677880 IDAT NA 2e740af2-85d3-4aa1-9c41-64c3b4b8a057 katmai +C3L-00369.MethArray.Red.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fa97092d-7795-495a-b922-277f11222f01/204372030079_R04C01_Red.idat 13677880 IDAT NA fa97092d-7795-495a-b922-277f11222f01 katmai C3L-00369.MethArray.Red.T C3L-00369 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/633f73b1-ac4d-4bc8-9e18-3caa9fa66816/202178770083_R02C01_Red.idat 13676231 IDAT NA 633f73b1-ac4d-4bc8-9e18-3caa9fa66816 katmai C3L-00369.miRNA-Seq.A C3L-00369 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/49bde798-410f-4797-a5d8-45a0a0445f9b/181108_UNC31-K00269_0163_BH23TVBBXY_CATTTT_S35_L004_R1_001.unaln.bam 225042975 BAM NA 49bde798-410f-4797-a5d8-45a0a0445f9b katmai +C3L-00369.miRNA-Seq.T C3L-00369 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7cc1d94f-2d93-4563-bf32-6b36af1fa5dc/200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L002_R1_001.unaln.bam 315804563 BAM NA 7cc1d94f-2d93-4563-bf32-6b36af1fa5dc katmai +C3L-00369.miRNA-Seq.T C3L-00369 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cb5085da-d0c5-479f-9a08-7ce9b20811de/200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L002_R1_001.unaln.bam 362120248 BAM NA cb5085da-d0c5-479f-9a08-7ce9b20811de katmai C3L-00369.miRNA-Seq.T C3L-00369 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c722db17-8629-4a0c-a3b6-225d8f8fc79a/181012_UNC32-K00270_0124_AH223CBBXY_CTATAC_S12_L005_R1_001.unaln.bam 251099581 BAM NA c722db17-8629-4a0c-a3b6-225d8f8fc79a katmai C3L-00369.RNA-Seq.genomic.A.hg38 C3L-00369 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/819c5247-d804-4a1d-a153-06de37ca43e6/83da75b9-fca9-417d-97c5-9d55a03d6776.rna_seq.genomic.gdc_realn.bam 9141018316 BAM hg38 819c5247-d804-4a1d-a153-06de37ca43e6 katmai C3L-00369.RNA-Seq.genomic.T.hg38 C3L-00369 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/73473513-b4ca-4bf4-8458-e98373b54fc5/bc49a54f-9d3a-4237-bd7c-d854d2b537b9.rna_seq.genomic.gdc_realn.bam 8928783923 BAM hg38 73473513-b4ca-4bf4-8458-e98373b54fc5 katmai C3L-00369.RNA-Seq.R1.A C3L-00369 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/b4164ae8-fc6e-483a-962e-d069d7b7a6fa/171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R1_001.fastq.gz 4378813042 FASTQ NA b4164ae8-fc6e-483a-962e-d069d7b7a6fa katmai C3L-00369.RNA-Seq.R1.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ee01ad02-6971-4ec8-acd6-dd2c4b58b90e/170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R1_001.fastq.gz 4385949568 FASTQ NA ee01ad02-6971-4ec8-acd6-dd2c4b58b90e katmai +C3L-00369.RNA-Seq.R1.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d4df7a3-0bc0-433a-b512-9693dcca677d/200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R1_001.fastq.gz 4559357071 FASTQ NA 0d4df7a3-0bc0-433a-b512-9693dcca677d katmai +C3L-00369.RNA-Seq.R1.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d8beac8-1680-43c5-aa5d-5420c89ba6ac/200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R1_001.fastq.gz 4333385636 FASTQ NA 0d8beac8-1680-43c5-aa5d-5420c89ba6ac katmai C3L-00369.RNA-Seq.R2.A C3L-00369 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/88a62ef5-b642-4fbf-a2b5-06b61fb3e50a/171208_UNC32-K00270_0071_BHN7K5BBXX_GGCTAC_S46_L005_R2_001.fastq.gz 4912455712 FASTQ NA 88a62ef5-b642-4fbf-a2b5-06b61fb3e50a katmai C3L-00369.RNA-Seq.R2.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/21c6bcae-8c89-403c-942e-e017be8fcb22/170823_UNC31-K00269_0075_AHLCW5BBXX_ACTGAT_S15_L004_R2_001.fastq.gz 4589565712 FASTQ NA 21c6bcae-8c89-403c-942e-e017be8fcb22 katmai +C3L-00369.RNA-Seq.R2.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/27a5d8ca-2413-4978-ac91-a446d558c6a5/200519_UNC31-K00269_0280_BHHKGNBBXY_AGTACTCC-AACCTGTT_S21_L006_R2_001.fastq.gz 5300994968 FASTQ NA 27a5d8ca-2413-4978-ac91-a446d558c6a5 katmai +C3L-00369.RNA-Seq.R2.T C3L-00369 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ca658797-2345-433f-8617-c14524027bba/200519_UNC31-K00269_0280_BHHKGNBBXY_ACTCGTGT-ATTGGAAC_S17_L005_R2_001.fastq.gz 4951122606 FASTQ NA ca658797-2345-433f-8617-c14524027bba katmai C3L-00369.WXS.N.hg38 C3L-00369 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/b23cc7c4-8879-4c59-9e9c-f8d52cf780a9/e01d567c-94df-4606-95ff-13d11ca6d24d_gdc_realn.bam 36084206720 BAM hg38 b23cc7c4-8879-4c59-9e9c-f8d52cf780a9 katmai C3L-00369.WXS.T.hg38 C3L-00369 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/da894189-0a3e-4a36-8468-19941f32136a/c71f1be9-860c-4cb3-9215-a1a8e78355da_gdc_realn.bam 73052393176 BAM hg38 da894189-0a3e-4a36-8468-19941f32136a katmai C3L-00395.MethArray.Green.T C3L-00395 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dad59a32-aebc-483b-bc24-7fc39ab108b6/202176290095_R06C01_Grn.idat 13676226 IDAT NA dad59a32-aebc-483b-bc24-7fc39ab108b6 katmai @@ -819,16 +838,26 @@ C3L-00416.RNA-Seq.R2.A C3L-00416 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cp C3L-00416.RNA-Seq.R2.T C3L-00416 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ad8325a4-34b9-473f-946e-1a779f0bf08b/170818_UNC32-K00270_0051_BHLCCHBBXX_GTTTCG_S21_L006_R2_001.fastq.gz 4118298802 FASTQ NA ad8325a4-34b9-473f-946e-1a779f0bf08b katmai C3L-00416.WXS.N.hg38 C3L-00416 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/e2a72d3d-3c5f-4a0c-9edb-c6dd309c598d/d0950d5e-e5ef-4f12-8c6f-3b28522b1778_gdc_realn.bam 31037809714 BAM hg38 e2a72d3d-3c5f-4a0c-9edb-c6dd309c598d katmai C3L-00416.WXS.T.hg38 C3L-00416 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/c50c5bcd-3801-4fd5-b0df-b3a834542d18/b6b85465-cb0b-4539-9e85-639a6fe66086_gdc_realn.bam 33078996768 BAM hg38 c50c5bcd-3801-4fd5-b0df-b3a834542d18 katmai +C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0f673095-3367-47e1-b142-09a66f0f5f62/204372030164_R04C01_Grn.idat 13677880 IDAT NA 0f673095-3367-47e1-b142-09a66f0f5f62 katmai +C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/886efe6c-f014-41d7-844c-6e6be155d8a8/204372030139_R04C01_Grn.idat 13677880 IDAT NA 886efe6c-f014-41d7-844c-6e6be155d8a8 katmai C3L-00418.MethArray.Green.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8ec5886e-540b-4c06-9d6e-18cab5bd7a91/202178770008_R02C01_Grn.idat 13676231 IDAT NA 8ec5886e-540b-4c06-9d6e-18cab5bd7a91 katmai +C3L-00418.MethArray.Red.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0f262075-705b-42fd-b3fc-f0db3583afb2/204372030139_R04C01_Red.idat 13677880 IDAT NA 0f262075-705b-42fd-b3fc-f0db3583afb2 katmai +C3L-00418.MethArray.Red.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a12c43f5-1650-474c-ae88-63fa2302f3f8/204372030164_R04C01_Red.idat 13677880 IDAT NA a12c43f5-1650-474c-ae88-63fa2302f3f8 katmai C3L-00418.MethArray.Red.T C3L-00418 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/35106cb3-71c4-4e6d-b36b-04e29bfe2723/202178770008_R02C01_Red.idat 13676231 IDAT NA 35106cb3-71c4-4e6d-b36b-04e29bfe2723 katmai C3L-00418.miRNA-Seq.A C3L-00418 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5c27c7e9-d1d9-48dc-9dec-9669999b2823/181108_UNC31-K00269_0163_BH23TVBBXY_CTAGCT_S38_L004_R1_001.unaln.bam 200119320 BAM NA 5c27c7e9-d1d9-48dc-9dec-9669999b2823 katmai +C3L-00418.miRNA-Seq.T C3L-00418 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4f962193-cd5a-42de-8fd0-df40f0f97db9/200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L002_R1_001.unaln.bam 287268011 BAM NA 4f962193-cd5a-42de-8fd0-df40f0f97db9 katmai +C3L-00418.miRNA-Seq.T C3L-00418 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5a82f5a1-bcc8-4e7c-a660-100f26372508/200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L002_R1_001.unaln.bam 423544457 BAM NA 5a82f5a1-bcc8-4e7c-a660-100f26372508 katmai C3L-00418.miRNA-Seq.T C3L-00418 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20d17324-834b-4935-a393-9e351a37d657/181012_UNC32-K00270_0124_AH223CBBXY_CTCAGA_S13_L005_R1_001.unaln.bam 241201505 BAM NA 20d17324-834b-4935-a393-9e351a37d657 katmai C3L-00418.RNA-Seq.genomic.A.hg38 C3L-00418 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/c06852ce-dca0-4b55-a6ff-2beb56044666/4e8a1478-580f-402c-8c62-929c93c38e7d.rna_seq.genomic.gdc_realn.bam 8332331116 BAM hg38 c06852ce-dca0-4b55-a6ff-2beb56044666 katmai C3L-00418.RNA-Seq.genomic.T.hg38 C3L-00418 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/b1cc63f0-8d40-4de7-b8de-2b3022cf24f5/a6e39a7c-f6ba-409d-90d5-1df276972326.rna_seq.genomic.gdc_realn.bam 6985124221 BAM hg38 b1cc63f0-8d40-4de7-b8de-2b3022cf24f5 katmai C3L-00418.RNA-Seq.R1.A C3L-00418 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e75e4811-3a6a-4467-a0d1-a0282b439dc1/180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R1_001.fastq.gz 4038425068 FASTQ NA e75e4811-3a6a-4467-a0d1-a0282b439dc1 katmai C3L-00418.RNA-Seq.R1.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/b67fdb10-3928-4421-894e-628861348b6c/170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R1_001.fastq.gz 3223751307 FASTQ NA b67fdb10-3928-4421-894e-628861348b6c katmai +C3L-00418.RNA-Seq.R1.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7976d875-054b-4336-83eb-2a71d65f8d01/200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R1_001.fastq.gz 3828295281 FASTQ NA 7976d875-054b-4336-83eb-2a71d65f8d01 katmai +C3L-00418.RNA-Seq.R1.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f86a8aa3-2366-4dec-81b2-bd0ac65a29f4/200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R1_001.fastq.gz 3456249727 FASTQ NA f86a8aa3-2366-4dec-81b2-bd0ac65a29f4 katmai C3L-00418.RNA-Seq.R2.A C3L-00418 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/aeb417bd-16a8-4c0b-85ad-7b361d4a701f/180313_UNC32-K00270_0085_BHT2MGBBXX_GTTTCG_S36_L007_R2_001.fastq.gz 4475052648 FASTQ NA aeb417bd-16a8-4c0b-85ad-7b361d4a701f katmai C3L-00418.RNA-Seq.R2.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a3a77dde-7a40-43fa-b991-10fa842d7115/170823_UNC31-K00269_0075_AHLCW5BBXX_ATTCCT_S14_L004_R2_001.fastq.gz 3402799451 FASTQ NA a3a77dde-7a40-43fa-b991-10fa842d7115 katmai +C3L-00418.RNA-Seq.R2.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/998539bc-b93c-4779-b240-b7fd479bde71/200519_UNC31-K00269_0280_BHHKGNBBXY_GACGTCTT-GGTTCACC_S23_L006_R2_001.fastq.gz 3947205801 FASTQ NA 998539bc-b93c-4779-b240-b7fd479bde71 katmai +C3L-00418.RNA-Seq.R2.T C3L-00418 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d69436e3-48bf-48d3-b5b3-67fde49da61a/200608_UNC31-K00269_0281_AHH5NFBBXY_TGCGAGAC-CATTGTTG_S5_L002_R2_001.fastq.gz 4380437830 FASTQ NA d69436e3-48bf-48d3-b5b3-67fde49da61a katmai C3L-00418.WXS.N.hg38 C3L-00418 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/f04b336a-904d-4844-8737-4d84c04119c9/a0658f29-2a4f-43c0-8d17-e351ea2f073f_gdc_realn.bam 31921602535 BAM hg38 f04b336a-904d-4844-8737-4d84c04119c9 katmai C3L-00418.WXS.T.hg38 C3L-00418 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d/1b9f819b-a488-4f4d-8b10-cd30e4ada90c_gdc_realn.bam 31097433856 BAM hg38 4a9f8a4a-599a-4584-8a3f-172e1e4f4f4d katmai C3L-00422.MethArray.Green.A C3L-00422 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a1461f0-4350-4d39-a000-3a009059dbc6/203028200034_R04C01_Grn.idat 13676226 IDAT NA 8a1461f0-4350-4d39-a000-3a009059dbc6 katmai @@ -904,16 +933,26 @@ C3L-00446.RNA-Seq.R1.A C3L-00446 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3L-00446.RNA-Seq.R1.T C3L-00446 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6dc12a76-42da-4bb6-a37c-e7b2600633f0/190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R1_001.fastq.gz 5082749836 FASTQ NA 6dc12a76-42da-4bb6-a37c-e7b2600633f0 katmai C3L-00446.RNA-Seq.R2.A C3L-00446 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e720a590-dbd9-4648-9c4c-80155cfecff4/190131_UNC32-K00270_0142_BH3LFYBBXY_TGACCA_S21_L007_R2_001.fastq.gz 4205733924 FASTQ NA e720a590-dbd9-4648-9c4c-80155cfecff4 katmai C3L-00446.RNA-Seq.R2.T C3L-00446 LUAD RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7c60aa89-72b4-4919-b828-99f4a5a033e2/190201_UNC31-K00269_0190_BH3LFKBBXY_GTCCGC_S20_L006_R2_001.fastq.gz 5819146639 FASTQ NA 7c60aa89-72b4-4919-b828-99f4a5a033e2 katmai +C3L-00447.MethArray.Green.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/76e867b5-95e0-4f06-bca4-a0822ba07174/204367490151_R04C01_Grn.idat 13677895 IDAT NA 76e867b5-95e0-4f06-bca4-a0822ba07174 katmai +C3L-00447.MethArray.Green.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a0b2c3d0-ec99-445c-a66f-8423a4ffd0b5/204367490082_R01C01_Grn.idat 13677900 IDAT NA a0b2c3d0-ec99-445c-a66f-8423a4ffd0b5 katmai C3L-00447.MethArray.Green.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/90dcff0b-8ea6-48cc-aa80-468c8d008295/202163550072_R02C01_Grn.idat 13676236 IDAT NA 90dcff0b-8ea6-48cc-aa80-468c8d008295 katmai +C3L-00447.MethArray.Red.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7fa1fdda-b818-4891-8ca1-71d28278bd2e/204367490082_R01C01_Red.idat 13677900 IDAT NA 7fa1fdda-b818-4891-8ca1-71d28278bd2e katmai +C3L-00447.MethArray.Red.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bcc90441-619b-452f-8e88-ee119dc5b378/204367490151_R04C01_Red.idat 13677895 IDAT NA bcc90441-619b-452f-8e88-ee119dc5b378 katmai C3L-00447.MethArray.Red.T C3L-00447 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/662536f1-4b03-4d05-99ed-76413c86db69/202163550072_R02C01_Red.idat 13676236 IDAT NA 662536f1-4b03-4d05-99ed-76413c86db69 katmai C3L-00447.miRNA-Seq.A C3L-00447 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0e5e857a-40cf-4e10-a339-14007a0ea64e/181108_UNC31-K00269_0163_BH23TVBBXY_CTATAC_S39_L004_R1_001.unaln.bam 184484485 BAM NA 0e5e857a-40cf-4e10-a339-14007a0ea64e katmai +C3L-00447.miRNA-Seq.T C3L-00447 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1517c841-4eeb-4d80-8b70-a6ac61b7fde2/200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L002_R1_001.unaln.bam 281773618 BAM NA 1517c841-4eeb-4d80-8b70-a6ac61b7fde2 katmai +C3L-00447.miRNA-Seq.T C3L-00447 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/edf69397-2751-4ef7-8150-4090301046e5/200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L002_R1_001.unaln.bam 459652727 BAM NA edf69397-2751-4ef7-8150-4090301046e5 katmai C3L-00447.miRNA-Seq.T C3L-00447 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f4bee798-04aa-4916-a12b-3baff5c84f62/181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L005_R1_001.unaln.bam 198207328 BAM NA f4bee798-04aa-4916-a12b-3baff5c84f62 katmai C3L-00447.RNA-Seq.genomic.A.hg38 C3L-00447 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/3423984f-ae86-47a6-857f-d11463f8643e/94a3d3d7-30f1-4de0-90c5-6490e188e5f1.rna_seq.genomic.gdc_realn.bam 6207668252 BAM hg38 3423984f-ae86-47a6-857f-d11463f8643e katmai C3L-00447.RNA-Seq.genomic.T.hg38 C3L-00447 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/bc5c16a3-7029-4b9d-8a9e-65d6a8e2e003/82b3da7f-b8fa-428c-9cf7-439092c2f7bc.rna_seq.genomic.gdc_realn.bam 8039641638 BAM hg38 bc5c16a3-7029-4b9d-8a9e-65d6a8e2e003 katmai C3L-00447.RNA-Seq.R1.A C3L-00447 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/2b47995f-8175-4d08-96ac-f52a5bc41aa5/171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R1_001.fastq.gz 3268525725 FASTQ NA 2b47995f-8175-4d08-96ac-f52a5bc41aa5 katmai C3L-00447.RNA-Seq.R1.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a408e8ca-1132-4cbf-bf67-5c76b012a2b7/170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R1_001.fastq.gz 3819481651 FASTQ NA a408e8ca-1132-4cbf-bf67-5c76b012a2b7 katmai +C3L-00447.RNA-Seq.R1.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/274c496d-765e-4014-aa7a-d298cace23eb/200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R1_001.fastq.gz 3734743600 FASTQ NA 274c496d-765e-4014-aa7a-d298cace23eb katmai +C3L-00447.RNA-Seq.R1.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e11e8977-2f36-41fa-89b5-ce5d4071ef1c/200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R1_001.fastq.gz 3933557689 FASTQ NA e11e8977-2f36-41fa-89b5-ce5d4071ef1c katmai C3L-00447.RNA-Seq.R2.A C3L-00447 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e0807d28-39f2-4c6c-bd40-371a132840a8/171208_UNC32-K00270_0071_BHN7K5BBXX_ATGTCA_S48_L005_R2_001.fastq.gz 3459761848 FASTQ NA e0807d28-39f2-4c6c-bd40-371a132840a8 katmai C3L-00447.RNA-Seq.R2.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44/170823_UNC31-K00269_0075_AHLCW5BBXX_ATCACG_S13_L004_R2_001.fastq.gz 3892291967 FASTQ NA 4690c1e9-6e9e-4f8f-b36a-e88f0fc5eb44 katmai +C3L-00447.RNA-Seq.R2.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0e933d02-8f5a-4490-af96-56d3d88d7c2f/200608_UNC31-K00269_0281_AHH5NFBBXY_ACAGGCGC-CTCTGCCT_S7_L002_R2_001.fastq.gz 4568321600 FASTQ NA 0e933d02-8f5a-4490-af96-56d3d88d7c2f katmai +C3L-00447.RNA-Seq.R2.T C3L-00447 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd/200608_UNC31-K00269_0281_AHH5NFBBXY_CATAGAGT-TGCCACCA_S6_L002_R2_001.fastq.gz 4225260777 FASTQ NA 6ca2d9b8-2ef8-4a01-a7a7-c62215ea68fd katmai C3L-00447.WXS.N.hg38 C3L-00447 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/5fcfa123-8827-4519-aefb-b0189ae82dc8/2acf7759-a2bf-47a0-b5e9-f32f6d1dd576_gdc_realn.bam 30882813614 BAM hg38 5fcfa123-8827-4519-aefb-b0189ae82dc8 katmai C3L-00447.WXS.T.hg38 C3L-00447 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/532f1bc2-2f90-4838-a000-aa75969e323c/51b9c76b-1f15-4493-9047-0d661fe133b6_gdc_realn.bam 31067852101 BAM hg38 532f1bc2-2f90-4838-a000-aa75969e323c katmai C3L-00448.MethArray.Green.T C3L-00448 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aa70c016-7c19-43bf-a766-58db0fe32bd8/202163550115_R02C01_Grn.idat 13676230 IDAT NA aa70c016-7c19-43bf-a766-58db0fe32bd8 katmai @@ -1112,28 +1151,47 @@ C3L-00568.WGS.T.hg38 C3L-00568 LSCC WGS tumor /diskmnt/Projects/cptac_downloads_ C3L-00568.WXS.A.hg38 C3L-00568 LSCC WXS tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/83a5b91e-7e86-49c9-aa73-50784d8d6ed3/d6197e35-b862-4f90-8986-af1a6450b2f7_wxs_gdc_realn.bam 37682193705 BAM hg38 83a5b91e-7e86-49c9-aa73-50784d8d6ed3 katmai C3L-00568.WXS.N.hg38 C3L-00568 LSCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/63c3f570-84a2-4548-b619-ed7c70a38485/556af585-1b23-404c-ae5f-9a74ebc5356b_gdc_realn.bam 53080986015 BAM hg38 63c3f570-84a2-4548-b619-ed7c70a38485 katmai C3L-00568.WXS.T.hg38 C3L-00568 LSCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f/a5b555c2-cf25-4110-829e-6d4d6ba23e1e_gdc_realn.bam 58982752050 BAM hg38 8aa9bbda-91e8-44b1-aa01-0fd1c7cbef5f katmai +C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3a4c98c1-7bee-4735-bcb6-036effb9b606/204367490057_R01C01_Grn.idat 13677905 IDAT NA 3a4c98c1-7bee-4735-bcb6-036effb9b606 katmai +C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b9229d25-50ab-4187-8767-1f6256976d6d/204372030015_R02C01_Grn.idat 13677905 IDAT NA b9229d25-50ab-4187-8767-1f6256976d6d katmai C3L-00581.MethArray.Green.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5e73e331-8d68-4aaa-ad4c-1b3d191049e7/202184990069_R02C01_Grn.idat 13676226 IDAT NA 5e73e331-8d68-4aaa-ad4c-1b3d191049e7 katmai +C3L-00581.MethArray.Red.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/678db087-bb05-44d4-893b-f02b46919fd2/204367490057_R01C01_Red.idat 13677905 IDAT NA 678db087-bb05-44d4-893b-f02b46919fd2 katmai +C3L-00581.MethArray.Red.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e348080d-8087-4bbe-b34e-eb196589dd4e/204372030015_R02C01_Red.idat 13677905 IDAT NA e348080d-8087-4bbe-b34e-eb196589dd4e katmai C3L-00581.MethArray.Red.T C3L-00581 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3f181994-f6be-4497-8fe8-08fc9b75b0e4/202184990069_R02C01_Red.idat 13676226 IDAT NA 3f181994-f6be-4497-8fe8-08fc9b75b0e4 katmai C3L-00581.miRNA-Seq.A C3L-00581 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9cbf526f-aa6c-4d3b-8808-2083db83d63d/181108_UNC31-K00269_0163_BH23TVBBXY_GACGAC_S41_L004_R1_001.unaln.bam 197084497 BAM NA 9cbf526f-aa6c-4d3b-8808-2083db83d63d katmai +C3L-00581.miRNA-Seq.T C3L-00581 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/962009ea-88e0-4cc6-aed4-c36e53eabfcf/200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L003_R1_001.unaln.bam 260391663 BAM NA 962009ea-88e0-4cc6-aed4-c36e53eabfcf katmai C3L-00581.miRNA-Seq.T C3L-00581 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a978f53b-1e05-46e9-a0d6-32a9268da128/181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L005_R1_001.unaln.bam 211021100 BAM NA a978f53b-1e05-46e9-a0d6-32a9268da128 katmai C3L-00581.RNA-Seq.genomic.A.hg38 C3L-00581 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/7bfaaf5f-c318-443b-9854-bdb4b812405c/01bbdb1d-d8e7-41b7-ae03-1d83fe2f27ab.rna_seq.genomic.gdc_realn.bam 9267737497 BAM hg38 7bfaaf5f-c318-443b-9854-bdb4b812405c katmai C3L-00581.RNA-Seq.genomic.T.hg38 C3L-00581 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/02d0ea76-c5e4-48c4-8198-480ae04ce983/75e63139-d91e-4a4c-bada-20cdc905e4c2.rna_seq.genomic.gdc_realn.bam 10468266308 BAM hg38 02d0ea76-c5e4-48c4-8198-480ae04ce983 katmai C3L-00581.RNA-Seq.R1.A C3L-00581 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/f761dab3-3ff1-4a49-9474-8036d27c9280/171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R1_001.fastq.gz 4482778225 FASTQ NA f761dab3-3ff1-4a49-9474-8036d27c9280 katmai C3L-00581.RNA-Seq.R1.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/dcb8323b-2167-4006-b110-77be5dc764f2/170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R1_001.fastq.gz 5032213698 FASTQ NA dcb8323b-2167-4006-b110-77be5dc764f2 katmai +C3L-00581.RNA-Seq.R1.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/72c54741-3962-47fe-bd92-4f15eb675c54/200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R1_001.fastq.gz 4121114773 FASTQ NA 72c54741-3962-47fe-bd92-4f15eb675c54 katmai +C3L-00581.RNA-Seq.R1.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c270b0a2-869d-47f9-b418-39a5fc471781/200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R1_001.fastq.gz 3267825908 FASTQ NA c270b0a2-869d-47f9-b418-39a5fc471781 katmai C3L-00581.RNA-Seq.R2.A C3L-00581 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/d3811f1e-b92a-4957-8381-aff5be4e16fe/171208_UNC32-K00270_0071_BHN7K5BBXX_GTCCGC_S44_L004_R2_001.fastq.gz 4732494986 FASTQ NA d3811f1e-b92a-4957-8381-aff5be4e16fe katmai C3L-00581.RNA-Seq.R2.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/9a5a64fa-d904-4a25-be8b-3ba527e2b306/170823_UNC31-K00269_0075_AHLCW5BBXX_TTAGGC_S9_L003_R2_001.fastq.gz 5480544572 FASTQ NA 9a5a64fa-d904-4a25-be8b-3ba527e2b306 katmai +C3L-00581.RNA-Seq.R2.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f/200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCTCTA-GCTCCGAC_S31_L008_R2_001.fastq.gz 4740809569 FASTQ NA 43b5c2c0-f3fb-4e36-bc50-a86a0f1af22f katmai +C3L-00581.RNA-Seq.R2.T C3L-00581 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/758ec05b-4bf7-4841-a92a-63dd823807df/200519_UNC31-K00269_0279_AHH5VTBBXY_GGTGAACC-GCGTTGGA_S32_L008_R2_001.fastq.gz 3872896238 FASTQ NA 758ec05b-4bf7-4841-a92a-63dd823807df katmai C3L-00581.WXS.N.hg38 C3L-00581 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/4d6619b0-b9a1-409b-ada3-8331aa643148/e9638496-3274-4e1b-b294-c8780236f749_gdc_realn.bam 32109620470 BAM hg38 4d6619b0-b9a1-409b-ada3-8331aa643148 katmai C3L-00581.WXS.T.hg38 C3L-00581 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/4575fae3-b4ec-48c7-bfa4-db21f199403d/98006060-84ac-4906-b27b-6f95c0806ab4_gdc_realn.bam 35804199649 BAM hg38 4575fae3-b4ec-48c7-bfa4-db21f199403d katmai +C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9d1393b4-e23d-408c-8581-6fb605e189a2/204372030071_R02C01_Grn.idat 13677890 IDAT NA 9d1393b4-e23d-408c-8581-6fb605e189a2 katmai +C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d3d08696-407a-4430-9590-b59f0121027e/204372030070_R03C01_Grn.idat 13677900 IDAT NA d3d08696-407a-4430-9590-b59f0121027e katmai C3L-00583.MethArray.Green.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/aa57cb7a-fd7f-48cf-bed7-97aa62cd11a5/202178770109_R01C01_Grn.idat 13676233 IDAT NA aa57cb7a-fd7f-48cf-bed7-97aa62cd11a5 katmai +C3L-00583.MethArray.Red.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4c5abb20-9bac-4c45-a828-a93f077c1e61/204372030071_R02C01_Red.idat 13677890 IDAT NA 4c5abb20-9bac-4c45-a828-a93f077c1e61 katmai +C3L-00583.MethArray.Red.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/eb56e239-f3f5-4065-abb3-0a81996ede35/204372030070_R03C01_Red.idat 13677900 IDAT NA eb56e239-f3f5-4065-abb3-0a81996ede35 katmai C3L-00583.MethArray.Red.T C3L-00583 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/41224284-2f94-4a27-abf9-29046edaf51e/202178770109_R01C01_Red.idat 13676233 IDAT NA 41224284-2f94-4a27-abf9-29046edaf51e katmai C3L-00583.miRNA-Seq.A C3L-00583 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/60aa4c60-4495-48b4-bec4-bc9e8891931d/181108_UNC31-K00269_0163_BH23TVBBXY_TCATTC_S45_L004_R1_001.unaln.bam 184482783 BAM NA 60aa4c60-4495-48b4-bec4-bc9e8891931d katmai +C3L-00583.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/16f5c677-61be-478c-8e3e-5d658758b0b0/200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L003_R1_001.unaln.bam 246108794 BAM NA 16f5c677-61be-478c-8e3e-5d658758b0b0 katmai +C3L-00583.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/374be261-8f0a-4a0b-8ae2-b969a0c2b6d2/200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L003_R1_001.unaln.bam 277857726 BAM NA 374be261-8f0a-4a0b-8ae2-b969a0c2b6d2 katmai C3L-00583.miRNA-Seq.T C3L-00583 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ed987edd-f4d5-4cfd-a391-d29d6c258afa/181012_UNC32-K00270_0124_AH223CBBXY_TCGGCA_S21_L004_R1_001.unaln.bam 200595190 BAM NA ed987edd-f4d5-4cfd-a391-d29d6c258afa katmai C3L-00583.RNA-Seq.genomic.A.hg38 C3L-00583 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/69db6e6e-fa5d-4f86-8566-9d1c07ac975a/b9f7f2b2-9df1-4987-aa8a-cd922d3f562d.rna_seq.genomic.gdc_realn.bam 7260924103 BAM hg38 69db6e6e-fa5d-4f86-8566-9d1c07ac975a katmai C3L-00583.RNA-Seq.genomic.T.hg38 C3L-00583 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/c26fbfcc-a9c5-4273-a487-d5a7ac6b974d/c071c041-a061-4e44-b83b-2d9318858784.rna_seq.genomic.gdc_realn.bam 7588647449 BAM hg38 c26fbfcc-a9c5-4273-a487-d5a7ac6b974d katmai C3L-00583.RNA-Seq.R1.A C3L-00583 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/5864effa-7bb3-434f-84ab-b726d8db1631/171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R1_001.fastq.gz 3519064040 FASTQ NA 5864effa-7bb3-434f-84ab-b726d8db1631 katmai C3L-00583.RNA-Seq.R1.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/3a6ea7b6-610e-4afa-9c10-d9019533a96b/170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R1_001.fastq.gz 4073385982 FASTQ NA 3a6ea7b6-610e-4afa-9c10-d9019533a96b katmai +C3L-00583.RNA-Seq.R1.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7f6e3889-42d1-4447-bf21-d3f2c94ebbb6/200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R1_001.fastq.gz 4048728879 FASTQ NA 7f6e3889-42d1-4447-bf21-d3f2c94ebbb6 katmai +C3L-00583.RNA-Seq.R1.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d82386c1-ec69-4e98-a2f7-c25a703e1ce5/200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R1_001.fastq.gz 3425522215 FASTQ NA d82386c1-ec69-4e98-a2f7-c25a703e1ce5 katmai C3L-00583.RNA-Seq.R2.A C3L-00583 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/bd0af26a-a13b-44ab-ae7d-26b25afd8513/171212_UNC31-K00269_0102_AHN5MMBBXX_CGTACG_S8_L008_R2_001.fastq.gz 3934223727 FASTQ NA bd0af26a-a13b-44ab-ae7d-26b25afd8513 katmai C3L-00583.RNA-Seq.R2.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8/170818_UNC32-K00270_0051_BHLCCHBBXX_GAGTGG_S19_L005_R2_001.fastq.gz 4392441326 FASTQ NA 0bb2dca8-6956-4024-ae6c-1a26c1fbf9f8 katmai +C3L-00583.RNA-Seq.R2.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/001a222e-33a9-4117-a953-f7aa168ca968/200519_UNC31-K00269_0280_BHHKGNBBXY_AGGCAGAG-AGAATGCC_S1_L001_R2_001.fastq.gz 4130070234 FASTQ NA 001a222e-33a9-4117-a953-f7aa168ca968 katmai +C3L-00583.RNA-Seq.R2.T C3L-00583 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/11afe406-9c2c-4e80-bc9e-999e5496cb66/200519_UNC31-K00269_0280_BHHKGNBBXY_TGGTGGCA-TCCTGTAA_S4_L001_R2_001.fastq.gz 4821507032 FASTQ NA 11afe406-9c2c-4e80-bc9e-999e5496cb66 katmai C3L-00583.WXS.N.hg38 C3L-00583 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/45d0d4d7-49d7-4693-b792-03bd82f50105/4f7cf63d-7f7d-4b92-9616-d101839c5d0f_gdc_realn.bam 38153859823 BAM hg38 45d0d4d7-49d7-4693-b792-03bd82f50105 katmai C3L-00583.WXS.T.hg38 C3L-00583 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/2d63999a-b9eb-4a93-8f09-bb3df487f938/b95aa1d8-289e-4fb5-8a7c-362ab610d931_gdc_realn.bam 49483675931 BAM hg38 2d63999a-b9eb-4a93-8f09-bb3df487f938 katmai C3L-00586.MethArray.Green.T C3L-00586 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/16464daf-4e9f-452a-bd44-708658e30f26/202163550076_R02C01_Grn.idat 13676226 IDAT NA 16464daf-4e9f-452a-bd44-708658e30f26 katmai @@ -1265,16 +1323,26 @@ C3L-00605.WGS.N.hg38 C3L-00605 UCEC WGS blood_normal /diskmnt/Projects/cptac3_pr C3L-00605.WGS.T.hg38 C3L-00605 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/e8fc5d11-248f-4095-b9bd-e4f2c732e6fb/d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 152827782905 BAM hg38 e8fc5d11-248f-4095-b9bd-e4f2c732e6fb katmai C3L-00605.WXS.N.hg38 C3L-00605 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/54a0c2d4-cbb6-41f9-bfaa-e8c58c7f5362/9c7363c2-750a-408e-aa11-1bfaae41e7d0_gdc_realn.bam 44867241203 BAM hg38 54a0c2d4-cbb6-41f9-bfaa-e8c58c7f5362 katmai C3L-00605.WXS.T.hg38 C3L-00605 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/d3e79d6a-2baf-4059-9ecb-ec1073619f26/d9a888d9-211a-4a13-bbed-23dba208a9d2_gdc_realn.bam 42595336721 BAM hg38 d3e79d6a-2baf-4059-9ecb-ec1073619f26 katmai +C3L-00606.MethArray.Green.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/55abf0fc-a0a8-421e-b091-7547b1e9148e/204372030161_R01C01_Grn.idat 13677880 IDAT NA 55abf0fc-a0a8-421e-b091-7547b1e9148e katmai +C3L-00606.MethArray.Green.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e4d82f96-e089-4441-902c-cd182bf86f19/204372030072_R04C01_Grn.idat 13677880 IDAT NA e4d82f96-e089-4441-902c-cd182bf86f19 katmai C3L-00606.MethArray.Green.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/944d78ee-cb1c-4522-bab7-bdeba711649d/202184990008_R03C01_Grn.idat 13676216 IDAT NA 944d78ee-cb1c-4522-bab7-bdeba711649d katmai +C3L-00606.MethArray.Red.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7a425473-3d0f-48df-a02f-4d0a8aea3aa1/204372030072_R04C01_Red.idat 13677880 IDAT NA 7a425473-3d0f-48df-a02f-4d0a8aea3aa1 katmai +C3L-00606.MethArray.Red.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d13a71a2-7aab-4182-9325-209cc33aea89/204372030161_R01C01_Red.idat 13677880 IDAT NA d13a71a2-7aab-4182-9325-209cc33aea89 katmai C3L-00606.MethArray.Red.T C3L-00606 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a8be6067-ae24-495f-845e-c6e4d460afee/202184990008_R03C01_Red.idat 13676216 IDAT NA a8be6067-ae24-495f-845e-c6e4d460afee katmai C3L-00606.miRNA-Seq.A C3L-00606 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e2795bea-2f23-4bc3-86fc-4d667b1ebd0e/181108_UNC31-K00269_0163_BH23TVBBXY_TCCCGA_S46_L004_R1_001.unaln.bam 245669922 BAM NA e2795bea-2f23-4bc3-86fc-4d667b1ebd0e katmai +C3L-00606.miRNA-Seq.T C3L-00606 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/14369cde-31ea-471c-b2cf-cac30a449f59/200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L003_R1_001.unaln.bam 258462014 BAM NA 14369cde-31ea-471c-b2cf-cac30a449f59 katmai +C3L-00606.miRNA-Seq.T C3L-00606 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ed840d13-64bd-4ed5-8416-ec7c2579bbc5/200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L003_R1_001.unaln.bam 244651016 BAM NA ed840d13-64bd-4ed5-8416-ec7c2579bbc5 katmai C3L-00606.miRNA-Seq.T C3L-00606 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5578cd29-c004-4a34-80d9-262c11eb3da3/181012_UNC32-K00270_0124_AH223CBBXY_TGACCA_S25_L007_R1_001.unaln.bam 186801172 BAM NA 5578cd29-c004-4a34-80d9-262c11eb3da3 katmai C3L-00606.RNA-Seq.genomic.A.hg38 C3L-00606 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/683ee716-e5b4-4563-a3fd-d708bb03f094/a111d320-887d-42ad-8872-525ea51e7504.rna_seq.genomic.gdc_realn.bam 8731602790 BAM hg38 683ee716-e5b4-4563-a3fd-d708bb03f094 katmai C3L-00606.RNA-Seq.genomic.T.hg38 C3L-00606 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/576eba01-cf56-41c6-9a80-241f80a77088/5037704e-720e-44d1-9aa5-cf0e4216b419.rna_seq.genomic.gdc_realn.bam 8205658867 BAM hg38 576eba01-cf56-41c6-9a80-241f80a77088 katmai C3L-00606.RNA-Seq.R1.A C3L-00606 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/17763b60-3901-4f7f-8074-d075ec244076/171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R1_001.fastq.gz 4236947704 FASTQ NA 17763b60-3901-4f7f-8074-d075ec244076 katmai C3L-00606.RNA-Seq.R1.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/c609497c-f015-409f-9cf7-3b466a1dd9e4/170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R1_001.fastq.gz 4073068847 FASTQ NA c609497c-f015-409f-9cf7-3b466a1dd9e4 katmai +C3L-00606.RNA-Seq.R1.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/09b97952-9927-4705-95f5-70dfc575427e/200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R1_001.fastq.gz 3161018660 FASTQ NA 09b97952-9927-4705-95f5-70dfc575427e katmai +C3L-00606.RNA-Seq.R1.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/35a41cff-30e6-444b-8e79-5ed6bcd0c649/200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R1_001.fastq.gz 4766794011 FASTQ NA 35a41cff-30e6-444b-8e79-5ed6bcd0c649 katmai C3L-00606.RNA-Seq.R2.A C3L-00606 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e298efe4-16f4-46ec-af52-d098a306ee1d/171212_UNC31-K00269_0102_AHN5MMBBXX_GAGTGG_S7_L008_R2_001.fastq.gz 4683728721 FASTQ NA e298efe4-16f4-46ec-af52-d098a306ee1d katmai C3L-00606.RNA-Seq.R2.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0f88b422-2196-4cc5-a77b-f48806ec407f/170905_UNC31-K00269_0079_AHLCF7BBXX_CGATGT_S14_L004_R2_001.fastq.gz 4450605623 FASTQ NA 0f88b422-2196-4cc5-a77b-f48806ec407f katmai +C3L-00606.RNA-Seq.R2.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5f052edd-5f06-49f4-b792-f02153f1f13a/200519_UNC31-K00269_0280_BHHKGNBBXY_GAATGAGA-GAGGCATT_S3_L001_R2_001.fastq.gz 5664402490 FASTQ NA 5f052edd-5f06-49f4-b792-f02153f1f13a katmai +C3L-00606.RNA-Seq.R2.T C3L-00606 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a024c126-7dca-4417-9a95-60649b9384b2/200519_UNC31-K00269_0280_BHHKGNBBXY_CAACAATG-CTTCACGG_S2_L001_R2_001.fastq.gz 3815255893 FASTQ NA a024c126-7dca-4417-9a95-60649b9384b2 katmai C3L-00606.WXS.N.hg38 C3L-00606 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/e6c6780a-4cc7-432e-8431-5b59a15d11c6/b8fe112b-ae62-4c1f-8856-7599e851035c_gdc_realn.bam 30061559684 BAM hg38 e6c6780a-4cc7-432e-8431-5b59a15d11c6 katmai C3L-00606.WXS.T.hg38 C3L-00606 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/08e74cee-0100-4130-8225-fd2b77b0e592/c873d23c-79cd-44f8-bfe1-1991e24a6f7d_gdc_realn.bam 43524921618 BAM hg38 08e74cee-0100-4130-8225-fd2b77b0e592 katmai C3L-00607.MethArray.Green.T C3L-00607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cd8d2e9c-72fe-4001-99cb-1a1fdc57be21/202184990066_R03C01_Grn.idat 13676216 IDAT NA cd8d2e9c-72fe-4001-99cb-1a1fdc57be21 katmai @@ -1687,17 +1755,27 @@ C3L-00905.WGS.T.hg38 C3L-00905 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1 C3L-00905.WXS.N.hg38 C3L-00905 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/faace15d-2171-48b5-9abb-8eb89ca66633/609e24b7-042b-4088-a100-b55d5f0beaf5_gdc_realn.bam 50418178617 BAM hg38 faace15d-2171-48b5-9abb-8eb89ca66633 katmai C3L-00905.WXS.T.hg38 C3L-00905 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/e6585c40-504d-419a-b31d-bacbfadc10da/d678d221-9dbd-4e9f-8f94-9aaef5f7092f_gdc_realn.bam 47057271603 BAM hg38 e6585c40-504d-419a-b31d-bacbfadc10da katmai C3L-00907.MethArray.Green.A C3L-00907 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/66404e28-1762-4b50-b93f-2cffeb05d3d0/203027380024_R04C01_Grn.idat 13676241 IDAT NA 66404e28-1762-4b50-b93f-2cffeb05d3d0 katmai +C3L-00907.MethArray.Green.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6da1c805-b648-4d6d-881c-f05953da1760/204367460011_R01C01_Grn.idat 13677880 IDAT NA 6da1c805-b648-4d6d-881c-f05953da1760 katmai +C3L-00907.MethArray.Green.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e456fd25-c0ca-4a73-8a29-eafddc945ced/204367490066_R01C01_Grn.idat 13677900 IDAT NA e456fd25-c0ca-4a73-8a29-eafddc945ced katmai C3L-00907.MethArray.Green.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2be4b73f-7c38-4e75-a90f-a28a47706fde/202184990057_R07C01_Grn.idat 13676220 IDAT NA 2be4b73f-7c38-4e75-a90f-a28a47706fde katmai C3L-00907.MethArray.Red.A C3L-00907 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/11973091-3dbe-40cc-bb3f-2ffa23d1316e/203027380024_R04C01_Red.idat 13676241 IDAT NA 11973091-3dbe-40cc-bb3f-2ffa23d1316e katmai +C3L-00907.MethArray.Red.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/382461a5-fb01-4644-8a02-154378e5224b/204367490066_R01C01_Red.idat 13677900 IDAT NA 382461a5-fb01-4644-8a02-154378e5224b katmai +C3L-00907.MethArray.Red.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/82484ee2-aadf-4c2c-8b92-5cb15a76c2c3/204367460011_R01C01_Red.idat 13677880 IDAT NA 82484ee2-aadf-4c2c-8b92-5cb15a76c2c3 katmai C3L-00907.MethArray.Red.T C3L-00907 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ca5bb86d-a65f-4dc8-b9e6-a26b23b189a5/202184990057_R07C01_Red.idat 13676220 IDAT NA ca5bb86d-a65f-4dc8-b9e6-a26b23b189a5 katmai C3L-00907.miRNA-Seq.A C3L-00907 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1fe3ad17-7b95-4b88-900f-cbfe636ef4f2/181108_UNC31-K00269_0163_BH23TVBBXY_GCCAAT_S6_L003_R1_001.unaln.bam 235584971 BAM NA 1fe3ad17-7b95-4b88-900f-cbfe636ef4f2 katmai +C3L-00907.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8e67a76b-8ab6-42e9-aa05-80c273d239fb/200526_UNC32-K00270_0248_BHH7WFBBXY_TGACCA_S46_L005_R1_001.unaln.bam 210415246 BAM NA 8e67a76b-8ab6-42e9-aa05-80c273d239fb katmai +C3L-00907.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9d07b5de-5ebb-4127-9dd5-9a8c7fc5df1c/200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L005_R1_001.unaln.bam 191519127 BAM NA 9d07b5de-5ebb-4127-9dd5-9a8c7fc5df1c katmai C3L-00907.miRNA-Seq.T C3L-00907 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ddfbd273-8d32-4cbb-b0a4-29fc4dc150d7/181113_UNC31-K00269_0164_AH23NNBBXY_TCGAAG_S23_L001_R1_001.unaln.bam 198149818 BAM NA ddfbd273-8d32-4cbb-b0a4-29fc4dc150d7 katmai C3L-00907.RNA-Seq.genomic.A.hg38 C3L-00907 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/13ec00f5-4a5f-484b-abb5-5248fbf23193/ad8ba4d4-7b4f-4256-81ee-0f74fdb0c6c4.rna_seq.genomic.gdc_realn.bam 7976899739 BAM hg38 13ec00f5-4a5f-484b-abb5-5248fbf23193 katmai C3L-00907.RNA-Seq.genomic.T.hg38 C3L-00907 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/ec0ed042-62f4-4765-b762-f5bdd5503593/4f7ad694-0a1a-4ca4-b862-daccf72bfdd2.rna_seq.genomic.gdc_realn.bam 7937380637 BAM hg38 ec0ed042-62f4-4765-b762-f5bdd5503593 katmai C3L-00907.RNA-Seq.R1.A C3L-00907 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/91e9deed-abfa-4e77-b5d0-771da7e6042c/171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R1_001.fastq.gz 4116509305 FASTQ NA 91e9deed-abfa-4e77-b5d0-771da7e6042c katmai C3L-00907.RNA-Seq.R1.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/feff905e-00f6-45d8-a067-6d887961203d/170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R1_001.fastq.gz 3806635927 FASTQ NA feff905e-00f6-45d8-a067-6d887961203d katmai +C3L-00907.RNA-Seq.R1.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/26820d22-be01-42dd-a1a1-748d7932a7a8/200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R1_001.fastq.gz 3901703095 FASTQ NA 26820d22-be01-42dd-a1a1-748d7932a7a8 katmai +C3L-00907.RNA-Seq.R1.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/355dd7a7-51a6-45e8-994d-ab93fc4e99d7/200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R1_001.fastq.gz 2953592785 FASTQ NA 355dd7a7-51a6-45e8-994d-ab93fc4e99d7 katmai C3L-00907.RNA-Seq.R2.A C3L-00907 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/fb84b43b-fbda-42e2-a32a-9f031db8feff/171212_UNC31-K00269_0102_AHN5MMBBXX_GCCAAT_S22_L006_R2_001.fastq.gz 4550943116 FASTQ NA fb84b43b-fbda-42e2-a32a-9f031db8feff katmai C3L-00907.RNA-Seq.R2.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/1ba5d8a7-958c-40af-958c-4d7c070debe4/170828_UNC31-K00269_0077_AHLF33BBXX_CGTACG_S19_L005_R2_001.fastq.gz 4134224462 FASTQ NA 1ba5d8a7-958c-40af-958c-4d7c070debe4 katmai +C3L-00907.RNA-Seq.R2.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bdea7f13-83db-4fc4-93ff-f770fd4f0859/200518_UNC32-K00270_0247_AHH573BBXY_GGACTTGG-CGCAGACG_S30_L004_R2_001.fastq.gz 4614033820 FASTQ NA bdea7f13-83db-4fc4-93ff-f770fd4f0859 katmai +C3L-00907.RNA-Seq.R2.T C3L-00907 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d14ba0d0-db53-4b1a-8b2a-08d713dec9b2/200518_UNC32-K00270_0247_AHH573BBXY_AAGTCCAA-TATGAGTA_S28_L004_R2_001.fastq.gz 3482612086 FASTQ NA d14ba0d0-db53-4b1a-8b2a-08d713dec9b2 katmai C3L-00907.WXS.N.hg38 C3L-00907 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/fd93766a-9f13-4593-8ef2-48d84271719c/9e37fe3b-588b-4e4b-87fb-8e427490226e_gdc_realn.bam 43540660835 BAM hg38 fd93766a-9f13-4593-8ef2-48d84271719c katmai C3L-00907.WXS.T.hg38 C3L-00907 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/5b8f478a-209f-47bc-893b-5d7302cd4f79/f746e289-2012-475a-840c-dc31a8909963_gdc_realn.bam 42988709588 BAM hg38 5b8f478a-209f-47bc-893b-5d7302cd4f79 katmai C3L-00908.MethArray.Green.T C3L-00908 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3013b22a-439d-4497-ac9f-bf75810cd989/203027390040_R02C01_Grn.idat 13676241 IDAT NA 3013b22a-439d-4497-ac9f-bf75810cd989 katmai @@ -2673,29 +2751,49 @@ C3L-01285.WXS.A.hg38 C3L-01285 LSCC WXS tissue_normal /diskmnt/Projects/cptac_do C3L-01285.WXS.N.hg38 C3L-01285 LSCC WXS blood_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/425b6b9a-af16-45d3-995d-790e291ca478/e704b262-5c0a-46f1-bdb2-463b4fe83c1a_wxs_gdc_realn.bam 38641817752 BAM hg38 425b6b9a-af16-45d3-995d-790e291ca478 katmai C3L-01285.WXS.T.hg38 C3L-01285 LSCC WXS tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803/09f170eb-d0fd-4f2c-818f-20bdfa042fb6_wxs_gdc_realn.bam 42998316223 BAM hg38 6d6e2b9d-4d1c-42b4-a6cb-756b8d0ca803 katmai C3L-01286.MethArray.Green.A C3L-01286 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/df2ff300-0973-4f0d-a656-9e7b855d5186/203027390029_R08C01_Grn.idat 13676246 IDAT NA df2ff300-0973-4f0d-a656-9e7b855d5186 katmai +C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/58be5587-c8b0-4d17-9b24-14151a8f1678/204372030085_R01C01_Grn.idat 13677880 IDAT NA 58be5587-c8b0-4d17-9b24-14151a8f1678 katmai +C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b44e188c-0878-400f-af62-52165e0b9fa8/204367470124_R03C01_Grn.idat 13677880 IDAT NA b44e188c-0878-400f-af62-52165e0b9fa8 katmai C3L-01286.MethArray.Green.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0a817c99-ca6f-4012-9afa-f115ff0859e4/202176300001_R08C01_Grn.idat 13676216 IDAT NA 0a817c99-ca6f-4012-9afa-f115ff0859e4 katmai C3L-01286.MethArray.Red.A C3L-01286 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e02f45ab-52f2-4795-84e4-1fccdca7b231/203027390029_R08C01_Red.idat 13676246 IDAT NA e02f45ab-52f2-4795-84e4-1fccdca7b231 katmai +C3L-01286.MethArray.Red.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/34e3608c-0ec3-49da-b67b-a6debc61555d/204372030085_R01C01_Red.idat 13677880 IDAT NA 34e3608c-0ec3-49da-b67b-a6debc61555d katmai +C3L-01286.MethArray.Red.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9858e47c-fcd6-41fa-9d99-1e69bab6674d/204367470124_R03C01_Red.idat 13677880 IDAT NA 9858e47c-fcd6-41fa-9d99-1e69bab6674d katmai C3L-01286.MethArray.Red.T C3L-01286 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/66262ed3-30d1-4cbc-bb0c-d4ba644df1ca/202176300001_R08C01_Red.idat 13676216 IDAT NA 66262ed3-30d1-4cbc-bb0c-d4ba644df1ca katmai C3L-01286.miRNA-Seq.A C3L-01286 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/eb0c04ae-dd29-4342-b668-3bfffabf2775/181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L005_R1_001.unaln.bam 152344550 BAM NA eb0c04ae-dd29-4342-b668-3bfffabf2775 katmai +C3L-01286.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/12897640-8046-49f3-97d3-2141b7a0fbd7/200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L004_R1_001.unaln.bam 183791928 BAM NA 12897640-8046-49f3-97d3-2141b7a0fbd7 katmai +C3L-01286.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9daa5cb1-886d-4531-9bf3-054ca6131646/200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L004_R1_001.unaln.bam 251964153 BAM NA 9daa5cb1-886d-4531-9bf3-054ca6131646 katmai C3L-01286.miRNA-Seq.T C3L-01286 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e590a1e3-dd10-4e73-aa9a-c48bbaf21566/181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L001_R1_001.unaln.bam 233567705 BAM NA e590a1e3-dd10-4e73-aa9a-c48bbaf21566 katmai C3L-01286.RNA-Seq.genomic.A.hg38 C3L-01286 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d89d2ed0-5c9d-4242-92e1-e13983a04b98/14608375-5f16-417e-b5f1-79a180b53b96.rna_seq.genomic.gdc_realn.bam 8750539708 BAM hg38 d89d2ed0-5c9d-4242-92e1-e13983a04b98 katmai C3L-01286.RNA-Seq.genomic.T.hg38 C3L-01286 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d82803ac-7509-452d-92aa-e75fe36f67a1/d49ce8f8-0618-472b-ab40-a57d586c6d8c.rna_seq.genomic.gdc_realn.bam 7522023969 BAM hg38 d82803ac-7509-452d-92aa-e75fe36f67a1 katmai C3L-01286.RNA-Seq.R1.A C3L-01286 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/7c03923c-a1f3-44cc-a70c-89a22a27f780/171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R1_001.fastq.gz 4256220377 FASTQ NA 7c03923c-a1f3-44cc-a70c-89a22a27f780 katmai C3L-01286.RNA-Seq.R1.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0d7011ca-0c48-43ef-8143-4c0b5e342cc8/171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R1_001.fastq.gz 3814402880 FASTQ NA 0d7011ca-0c48-43ef-8143-4c0b5e342cc8 katmai +C3L-01286.RNA-Seq.R1.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/13262c45-16ad-4c4d-8b2f-332613c9e5af/200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R1_001.fastq.gz 3713606868 FASTQ NA 13262c45-16ad-4c4d-8b2f-332613c9e5af katmai +C3L-01286.RNA-Seq.R1.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8cde48de-4e58-439a-8be7-9df3c665e913/200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R1_001.fastq.gz 3975358314 FASTQ NA 8cde48de-4e58-439a-8be7-9df3c665e913 katmai C3L-01286.RNA-Seq.R2.A C3L-01286 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/387efbbe-ed80-4e0d-a72d-bc8dad68a2e5/171205_UNC32-K00270_0069_BHN2HGBBXX_CCGTCC_S8_L002_R2_001.fastq.gz 4199001179 FASTQ NA 387efbbe-ed80-4e0d-a72d-bc8dad68a2e5 katmai C3L-01286.RNA-Seq.R2.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/c07931d4-4634-4705-8c0f-f7c78ce8b017/171011_UNC31-K00269_0086_AHLJLCBBXX_GTTTCG_S6_L006_R2_001.fastq.gz 4005785828 FASTQ NA c07931d4-4634-4705-8c0f-f7c78ce8b017 katmai +C3L-01286.RNA-Seq.R2.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/05abf494-6e36-49bc-82b0-c00d8d43bba4/200519_UNC31-K00269_0279_AHH5VTBBXY_ATATGGAT-CTGTATTA_S22_L006_R2_001.fastq.gz 4553952342 FASTQ NA 05abf494-6e36-49bc-82b0-c00d8d43bba4 katmai +C3L-01286.RNA-Seq.R2.T C3L-01286 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d81807be-d2cb-4a97-83f0-6999d9282f5a/200519_UNC31-K00269_0279_AHH5VTBBXY_GCGCAAGC-TCACGCCG_S23_L006_R2_001.fastq.gz 4364596156 FASTQ NA d81807be-d2cb-4a97-83f0-6999d9282f5a katmai C3L-01286.WXS.N.hg38 C3L-01286 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/c44e27d0-9c27-42c1-8a29-760ae836bab5/d82565ca-eaa7-41fe-8a36-6cd4ec201b64_gdc_realn.bam 41430327836 BAM hg38 c44e27d0-9c27-42c1-8a29-760ae836bab5 katmai C3L-01286.WXS.T.hg38 C3L-01286 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/b7647bbe-e07f-45e9-84e3-1d0073c81f28/055ee558-21d4-4aff-8edd-54f646918acc_gdc_realn.bam 43614684455 BAM hg38 b7647bbe-e07f-45e9-84e3-1d0073c81f28 katmai +C3L-01287.MethArray.Green.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3d25a9c8-5e6a-442f-92e0-1df43e0f6f01/204367470127_R04C01_Grn.idat 13677890 IDAT NA 3d25a9c8-5e6a-442f-92e0-1df43e0f6f01 katmai +C3L-01287.MethArray.Green.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f3a8e55b-36f0-4dc8-90b0-97e107689fd8/204372030011_R03C01_Grn.idat 13677890 IDAT NA f3a8e55b-36f0-4dc8-90b0-97e107689fd8 katmai C3L-01287.MethArray.Green.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3accc92b-f813-4e0b-ad5e-fb260d344300/202178770045_R05C01_Grn.idat 13676241 IDAT NA 3accc92b-f813-4e0b-ad5e-fb260d344300 katmai +C3L-01287.MethArray.Red.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2f8ecc89-5f68-4dc8-aa7f-18098edd5edc/204367470127_R04C01_Red.idat 13677890 IDAT NA 2f8ecc89-5f68-4dc8-aa7f-18098edd5edc katmai +C3L-01287.MethArray.Red.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/327b06ce-2bf4-47c1-b2c2-274db67130a2/204372030011_R03C01_Red.idat 13677890 IDAT NA 327b06ce-2bf4-47c1-b2c2-274db67130a2 katmai C3L-01287.MethArray.Red.T C3L-01287 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/56eff7b2-bcdd-4eb1-9758-3b553c2b6d27/202178770045_R05C01_Red.idat 13676241 IDAT NA 56eff7b2-bcdd-4eb1-9758-3b553c2b6d27 katmai C3L-01287.miRNA-Seq.A C3L-01287 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/11a4b592-52f8-41bc-a8ef-4885dca97bab/181108_UNC31-K00269_0163_BH23TVBBXY_CGATGT_S2_L003_R1_001.unaln.bam 219604775 BAM NA 11a4b592-52f8-41bc-a8ef-4885dca97bab katmai +C3L-01287.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/098a5f29-49cd-4a32-ba63-c8488549e5e5/200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L005_R1_001.unaln.bam 313342157 BAM NA 098a5f29-49cd-4a32-ba63-c8488549e5e5 katmai +C3L-01287.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b415b5e9-0f18-40bc-a775-76ff89768368/200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L005_R1_001.unaln.bam 295681447 BAM NA b415b5e9-0f18-40bc-a775-76ff89768368 katmai C3L-01287.miRNA-Seq.T C3L-01287 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/384b760a-1bc5-4dac-8c46-b16c3d289001/181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L001_R1_001.unaln.bam 159949140 BAM NA 384b760a-1bc5-4dac-8c46-b16c3d289001 katmai C3L-01287.RNA-Seq.genomic.A.hg38 C3L-01287 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/5a92f6f3-2492-486e-b764-55cdf37f7665/3b0ee8d9-8fe9-4a5e-8cea-7f98c3540ad1.rna_seq.genomic.gdc_realn.bam 8768981989 BAM hg38 5a92f6f3-2492-486e-b764-55cdf37f7665 katmai C3L-01287.RNA-Seq.genomic.T.hg38 C3L-01287 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/5b81c13c-5ff2-42ab-806f-0a39302018d2/55f14c21-2a46-4be0-a3f0-ae0a994dc0d9.rna_seq.genomic.gdc_realn.bam 7472818955 BAM hg38 5b81c13c-5ff2-42ab-806f-0a39302018d2 katmai C3L-01287.RNA-Seq.R1.A C3L-01287 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/35c21dfb-4da7-4c62-961a-5724f2353fa6/171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R1_001.fastq.gz 4432088711 FASTQ NA 35c21dfb-4da7-4c62-961a-5724f2353fa6 katmai C3L-01287.RNA-Seq.R1.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ffb43c31-d570-4796-8b3a-fcc3cd19c884/170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R1_001.fastq.gz 3997328288 FASTQ NA ffb43c31-d570-4796-8b3a-fcc3cd19c884 katmai +C3L-01287.RNA-Seq.R1.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/61a7995b-61cc-4d4c-a894-3cf34cf6428d/200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R1_001.fastq.gz 3848758785 FASTQ NA 61a7995b-61cc-4d4c-a894-3cf34cf6428d katmai +C3L-01287.RNA-Seq.R1.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d65261b4-8bde-4d0e-8575-7eaf615c6e5d/200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R1_001.fastq.gz 3684659898 FASTQ NA d65261b4-8bde-4d0e-8575-7eaf615c6e5d katmai C3L-01287.RNA-Seq.R2.A C3L-01287 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e45e4ad2-c8e1-4c06-81e8-647f36e01b5d/171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L007_R2_001.fastq.gz 4684276351 FASTQ NA e45e4ad2-c8e1-4c06-81e8-647f36e01b5d katmai C3L-01287.RNA-Seq.R2.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/123a7b3b-32f8-4460-910d-f05757a239a8/170905_UNC31-K00269_0079_AHLCF7BBXX_TGACCA_S16_L004_R2_001.fastq.gz 4217433923 FASTQ NA 123a7b3b-32f8-4460-910d-f05757a239a8 katmai +C3L-01287.RNA-Seq.R2.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/054227df-d99a-4fe5-a411-061ccb226e8c/200518_UNC32-K00270_0247_AHH573BBXY_TTGGACTC-GGAAGCAG_S42_L007_R2_001.fastq.gz 4314615042 FASTQ NA 054227df-d99a-4fe5-a411-061ccb226e8c katmai +C3L-01287.RNA-Seq.R2.T C3L-01287 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0fae67c7-b141-487b-a4af-d45b25b6f81d/200518_UNC32-K00270_0247_AHH573BBXY_GGCTTAAG-TCGTGACC_S41_L007_R2_001.fastq.gz 4414315910 FASTQ NA 0fae67c7-b141-487b-a4af-d45b25b6f81d katmai C3L-01287.WXS.N.hg38 C3L-01287 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/8f61ee95-ee30-47d2-b678-3b345ff918f8/5ed32977-dc68-4499-91a2-14b00a4c0c9e_gdc_realn.bam 34480365456 BAM hg38 8f61ee95-ee30-47d2-b678-3b345ff918f8 katmai C3L-01287.WXS.T.hg38 C3L-01287 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/e58d856a-e047-41f2-8700-4a7f61158cd4/07514a87-8290-46cf-9276-ed86d25cafcb_gdc_realn.bam 48626755556 BAM hg38 e58d856a-e047-41f2-8700-4a7f61158cd4 katmai C3L-01288.MethArray.Green.T C3L-01288 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/28d6b96b-846f-4d74-a865-066d2a1d421a/202184900128_R03C01_Grn.idat 13676246 IDAT NA 28d6b96b-846f-4d74-a865-066d2a1d421a katmai @@ -3012,16 +3110,26 @@ C3L-01601.RNA-Seq.R1.A C3L-01601 SAR RNA-Seq tissue_normal /diskmnt/Projects/cpt C3L-01601.RNA-Seq.R1.T C3L-01601 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/74bd7423-bd88-4774-b5af-1969b53a8aa8/171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R1_001.fastq.gz 3655471469 FASTQ NA 74bd7423-bd88-4774-b5af-1969b53a8aa8 katmai C3L-01601.RNA-Seq.R2.A C3L-01601 SAR RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/79b04c28-861b-49c8-96d0-3deccc138236/180606_UNC32-K00270_0097_AHVCKFBBXX_CGTACG_S14_L004_R2_001.fastq.gz 4348466857 FASTQ NA 79b04c28-861b-49c8-96d0-3deccc138236 katmai C3L-01601.RNA-Seq.R2.T C3L-01601 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7b9fccf0-a718-492b-8698-8a72a2c2a719/171116_UNC31-K00269_0093_BHMFKJBBXX_ATGTCA_S8_L002_R2_001.fastq.gz 4038026134 FASTQ NA 7b9fccf0-a718-492b-8698-8a72a2c2a719 katmai +C3L-01603.MethArray.Green.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/027f2f66-c51f-4876-9234-8c39721c605a/204367470132_R01C01_Grn.idat 13677880 IDAT NA 027f2f66-c51f-4876-9234-8c39721c605a katmai +C3L-01603.MethArray.Green.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d5c255a4-c167-4b53-aec3-57d5847b3a42/204372030139_R03C01_Grn.idat 13677880 IDAT NA d5c255a4-c167-4b53-aec3-57d5847b3a42 katmai C3L-01603.MethArray.Green.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/87caae1f-10fc-44a8-9331-584b73ab0f61/202176290095_R07C01_Grn.idat 13676226 IDAT NA 87caae1f-10fc-44a8-9331-584b73ab0f61 katmai +C3L-01603.MethArray.Red.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3c154978-4a64-4756-add3-4600afc99de0/204367470132_R01C01_Red.idat 13677880 IDAT NA 3c154978-4a64-4756-add3-4600afc99de0 katmai +C3L-01603.MethArray.Red.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc5276c9-1105-4c26-9645-666f288a0f06/204372030139_R03C01_Red.idat 13677880 IDAT NA dc5276c9-1105-4c26-9645-666f288a0f06 katmai C3L-01603.MethArray.Red.T C3L-01603 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6e142cb4-4c18-4900-ae6d-e05c1a5403db/202176290095_R07C01_Red.idat 13676226 IDAT NA 6e142cb4-4c18-4900-ae6d-e05c1a5403db katmai C3L-01603.miRNA-Seq.A C3L-01603 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4a2a5ef9-7b5c-4386-8c59-078df6b4d8ae/181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L005_R1_001.unaln.bam 163344795 BAM NA 4a2a5ef9-7b5c-4386-8c59-078df6b4d8ae katmai +C3L-01603.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2b19c8c6-da19-4267-a82c-a2d1e5662c47/200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L003_R1_001.unaln.bam 384606700 BAM NA 2b19c8c6-da19-4267-a82c-a2d1e5662c47 katmai +C3L-01603.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d2f2dee4-4830-4dea-adfd-0c59e72eebd5/200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L003_R1_001.unaln.bam 342183985 BAM NA d2f2dee4-4830-4dea-adfd-0c59e72eebd5 katmai C3L-01603.miRNA-Seq.T C3L-01603 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c2952661-cc69-4792-870f-e15cef2ddfb4/181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L008_R1_001.unaln.bam 215307960 BAM NA c2952661-cc69-4792-870f-e15cef2ddfb4 katmai C3L-01603.RNA-Seq.genomic.A.hg38 C3L-01603 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/cf9e6057-90f4-472d-9c3a-c16ce3005530/ae66ea9e-686c-4d8e-bd84-8726972b6930.rna_seq.genomic.gdc_realn.bam 9734577438 BAM hg38 cf9e6057-90f4-472d-9c3a-c16ce3005530 katmai C3L-01603.RNA-Seq.genomic.T.hg38 C3L-01603 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/6fcb822a-87b7-42a4-b3d1-48a85033e0b3/037e008c-1acf-48e4-a463-ba942b34dcba.rna_seq.genomic.gdc_realn.bam 6787279576 BAM hg38 6fcb822a-87b7-42a4-b3d1-48a85033e0b3 katmai C3L-01603.RNA-Seq.R1.A C3L-01603 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e138348f-c1aa-4865-a8bc-1784557a4f89/171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R1_001.fastq.gz 4805210218 FASTQ NA e138348f-c1aa-4865-a8bc-1784557a4f89 katmai C3L-01603.RNA-Seq.R1.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/2fec763c-44ca-4f62-ac76-cf3f28d272c4/171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R1_001.fastq.gz 3431472766 FASTQ NA 2fec763c-44ca-4f62-ac76-cf3f28d272c4 katmai +C3L-01603.RNA-Seq.R1.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8b099758-d7e9-4d93-8efb-f32ec126a22f/200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R1_001.fastq.gz 3759773869 FASTQ NA 8b099758-d7e9-4d93-8efb-f32ec126a22f katmai +C3L-01603.RNA-Seq.R1.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cb95c513-52ca-4641-aa21-ee16ecb9bf76/200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R1_001.fastq.gz 3934128919 FASTQ NA cb95c513-52ca-4641-aa21-ee16ecb9bf76 katmai C3L-01603.RNA-Seq.R2.A C3L-01603 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/23bf8a0e-ebc4-4f6a-978f-a04a170d9979/171205_UNC32-K00270_0069_BHN2HGBBXX_GTCCGC_S7_L002_R2_001.fastq.gz 5008820276 FASTQ NA 23bf8a0e-ebc4-4f6a-978f-a04a170d9979 katmai C3L-01603.RNA-Seq.R2.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/d09aa237-4266-4f20-b503-82f401998031/171011_UNC31-K00269_0086_AHLJLCBBXX_CGTACG_S15_L005_R2_001.fastq.gz 3674265253 FASTQ NA d09aa237-4266-4f20-b503-82f401998031 katmai +C3L-01603.RNA-Seq.R2.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d1f8769-7831-4527-9fad-7baeb5269902/200519_UNC31-K00269_0279_AHH5VTBBXY_GGAGCGTC-GTCCGTGC_S24_L006_R2_001.fastq.gz 4442281635 FASTQ NA 0d1f8769-7831-4527-9fad-7baeb5269902 katmai +C3L-01603.RNA-Seq.R2.T C3L-01603 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dbfcd61d-13bd-434f-88f8-39a69e5c0460/200519_UNC31-K00269_0279_AHH5VTBBXY_AAGATACT-ACTTACAT_S21_L006_R2_001.fastq.gz 4490562842 FASTQ NA dbfcd61d-13bd-434f-88f8-39a69e5c0460 katmai C3L-01603.WXS.N.hg38 C3L-01603 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/dc692a2f-c698-4e56-a99c-4de2ab303ec1/0bf76841-56c0-4d7b-9ac8-404463eebb19_gdc_realn.bam 47249064201 BAM hg38 dc692a2f-c698-4e56-a99c-4de2ab303ec1 katmai C3L-01603.WXS.T.hg38 C3L-01603 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/9cf6e0c1-e777-4ca3-b956-07947dce8216/68b4ea45-a8af-4d72-b8b0-35a102d2f517_gdc_realn.bam 65921297500 BAM hg38 9cf6e0c1-e777-4ca3-b956-07947dce8216 katmai C3L-01604.MethArray.Green.T C3L-01604 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5b0d4980-f174-4309-81c7-b752ef145e53/202176290105_R07C01_Grn.idat 13676216 IDAT NA 5b0d4980-f174-4309-81c7-b752ef145e53 katmai @@ -3052,16 +3160,26 @@ C3L-01606.WGS.T.hg38 C3L-01606 LSCC WGS tumor /diskmnt/Projects/cptac_downloads_ C3L-01606.WXS.A.hg38 C3L-01606 LSCC WXS tissue_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9c5754ff-1b55-40e6-bacc-5fabb58aa7c5/1a00f5ef-418f-466c-a02c-3fd5f9af96ac_wxs_gdc_realn.bam 40925187576 BAM hg38 9c5754ff-1b55-40e6-bacc-5fabb58aa7c5 katmai C3L-01606.WXS.N.hg38 C3L-01606 LSCC WXS blood_normal /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ba67c547-f229-44c3-b97d-8a8caea30e47/14f61799-01e6-4bc3-8da4-8d52b448bdaf_wxs_gdc_realn.bam 40451984185 BAM hg38 ba67c547-f229-44c3-b97d-8a8caea30e47 katmai C3L-01606.WXS.T.hg38 C3L-01606 LSCC WXS tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6cef75a3-5204-4914-948c-673047273d59/ae2ea600-3419-45eb-a7cc-e397a4f13e2e_wxs_gdc_realn.bam 42392754674 BAM hg38 6cef75a3-5204-4914-948c-673047273d59 katmai +C3L-01607.MethArray.Green.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6a552b5f-0ba7-4469-a729-981ce12973bc/204372030071_R05C01_Grn.idat 13677890 IDAT NA 6a552b5f-0ba7-4469-a729-981ce12973bc katmai +C3L-01607.MethArray.Green.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/80a96047-b286-4d7e-aebb-66788fe9b08b/204367470131_R03C01_Grn.idat 13677880 IDAT NA 80a96047-b286-4d7e-aebb-66788fe9b08b katmai C3L-01607.MethArray.Green.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f2629a18-c437-4c62-9f0f-f1c0ddd24ca1/202234380069_R04C01_Grn.idat 13676246 IDAT NA f2629a18-c437-4c62-9f0f-f1c0ddd24ca1 katmai +C3L-01607.MethArray.Red.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4b5e8dc3-a4ee-4066-9c3a-06502aa123a2/204372030071_R05C01_Red.idat 13677890 IDAT NA 4b5e8dc3-a4ee-4066-9c3a-06502aa123a2 katmai +C3L-01607.MethArray.Red.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b821d0f1-413f-45ce-a27d-da8c0a283ca2/204367470131_R03C01_Red.idat 13677880 IDAT NA b821d0f1-413f-45ce-a27d-da8c0a283ca2 katmai C3L-01607.MethArray.Red.T C3L-01607 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/35c3fd9f-2b85-478a-b539-0d15519c3b73/202234380069_R04C01_Red.idat 13676246 IDAT NA 35c3fd9f-2b85-478a-b539-0d15519c3b73 katmai C3L-01607.miRNA-Seq.A C3L-01607 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6c77cf2f-97e5-4465-91cb-c70d5b2e6dd6/181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L005_R1_001.unaln.bam 193654998 BAM NA 6c77cf2f-97e5-4465-91cb-c70d5b2e6dd6 katmai +C3L-01607.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3fd361a6-5a7d-45f9-bea2-45fdce426b5d/200526_UNC32-K00270_0248_BHH7WFBBXY_TCATTC_S18_L003_R1_001.unaln.bam 289966674 BAM NA 3fd361a6-5a7d-45f9-bea2-45fdce426b5d katmai +C3L-01607.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9a4d4eab-a784-41bc-af14-9f222a157562/200526_UNC32-K00270_0248_BHH7WFBBXY_TATAAT_S17_L001_R1_001.unaln.bam 209689675 BAM NA 9a4d4eab-a784-41bc-af14-9f222a157562 katmai C3L-01607.miRNA-Seq.T C3L-01607 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2d5021e4-fbff-4675-9d3d-13b676f53324/180724_UNC32-K00270_0106_BHWK3MBBXX_CACGAT_S7_L007_R1_001.unaln.bam 258690073 BAM NA 2d5021e4-fbff-4675-9d3d-13b676f53324 katmai C3L-01607.RNA-Seq.genomic.A.hg38 C3L-01607 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/c1a372fa-e3f9-4da9-997a-f76915d7a221/18dae440-ef2f-4145-aeac-09c4f7e5209f.rna_seq.genomic.gdc_realn.bam 8935854620 BAM hg38 c1a372fa-e3f9-4da9-997a-f76915d7a221 katmai C3L-01607.RNA-Seq.genomic.T.hg38 C3L-01607 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/4346cf05-e2e9-445e-8c50-83e4c0408476/c4e027f0-da5f-4c2b-99d5-c9c697c75662.rna_seq.genomic.gdc_realn.bam 9456622464 BAM hg38 4346cf05-e2e9-445e-8c50-83e4c0408476 katmai C3L-01607.RNA-Seq.R1.A C3L-01607 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/6c109f03-8177-45d3-a4a2-f19074ee4ed6/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R1_001.fastq.gz 4412072551 FASTQ NA 6c109f03-8177-45d3-a4a2-f19074ee4ed6 katmai C3L-01607.RNA-Seq.R1.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0cca5899-0e8e-48ad-86dd-613e61876cc8/171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R1_001.fastq.gz 4333613798 FASTQ NA 0cca5899-0e8e-48ad-86dd-613e61876cc8 katmai +C3L-01607.RNA-Seq.R1.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d7b825fc-a5a5-415e-bd76-2356d4df3d64/200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R1_001.fastq.gz 3424823977 FASTQ NA d7b825fc-a5a5-415e-bd76-2356d4df3d64 katmai +C3L-01607.RNA-Seq.R1.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e028725b-d0c9-4181-8f50-fd1c079da914/200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R1_001.fastq.gz 4209730181 FASTQ NA e028725b-d0c9-4181-8f50-fd1c079da914 katmai C3L-01607.RNA-Seq.R2.A C3L-01607 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/8c20a402-e741-42c8-9f58-d50da87cef25/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGAAA_S3_L001_R2_001.fastq.gz 4324449781 FASTQ NA 8c20a402-e741-42c8-9f58-d50da87cef25 katmai C3L-01607.RNA-Seq.R2.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ce2ab1d4-c67d-4eed-9a1a-66e753edff5b/171129_UNC32-K00270_0066_AHM25VBBXX_CAGATC_S1_L006_R2_001.fastq.gz 4832978770 FASTQ NA ce2ab1d4-c67d-4eed-9a1a-66e753edff5b katmai +C3L-01607.RNA-Seq.R2.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5613d162-73a9-4540-9011-1d9ae35f221d/200608_UNC31-K00269_0281_AHH5NFBBXY_ACGCACCT-GGTGAAGG_S4_L001_R2_001.fastq.gz 5046398238 FASTQ NA 5613d162-73a9-4540-9011-1d9ae35f221d katmai +C3L-01607.RNA-Seq.R2.T C3L-01607 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fc584b2b-cb19-41da-a8bd-fe57c972f412/200519_UNC31-K00269_0279_AHH5VTBBXY_ATGGCATG-AAGGTACC_S26_L007_R2_001.fastq.gz 4061944604 FASTQ NA fc584b2b-cb19-41da-a8bd-fe57c972f412 katmai C3L-01631.MethArray.Green.T C3L-01631 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/810c3000-3a91-4e59-ab17-2a5b3abedc4a/202234380051_R04C01_Grn.idat 13676231 IDAT NA 810c3000-3a91-4e59-ab17-2a5b3abedc4a katmai C3L-01631.MethArray.Red.T C3L-01631 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6c51a1b7-3ff1-4fcd-8d34-91bf052be2db/202234380051_R04C01_Red.idat 13676231 IDAT NA 6c51a1b7-3ff1-4fcd-8d34-91bf052be2db katmai C3L-01631.miRNA-Seq.T C3L-01631 UCEC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9f1e509d-1e57-413f-8f8c-5615d31b0486/180828_UNC32-K00270_0112_AHWTLNBBXX_GATCAG_S1_L006_R1_001.unaln.bam 199721113 BAM NA 9f1e509d-1e57-413f-8f8c-5615d31b0486 katmai @@ -3356,16 +3474,26 @@ C3L-01834.WGS.N.hg38 C3L-01834 GBM WGS blood_normal /diskmnt/Projects/cptac_down C3L-01834.WXS.N.hg38 C3L-01834 GBM WXS blood_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/2ce1baf3-67b6-4de5-bb81-51f89abbf1c6/7bd95971-f2a9-4d31-beb1-cb3aa2d72fb5_wxs_gdc_realn.bam 47769398348 BAM hg38 2ce1baf3-67b6-4de5-bb81-51f89abbf1c6 katmai C3L-01834.WXS.T.hg38 C3L-01834 GBM WXS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/18d26f34-47b9-4b58-81da-48f777001d49/c0308317-bfca-4564-bc9a-9e31ec5b1336_wxs_gdc_realn.bam 31018736739 BAM hg38 18d26f34-47b9-4b58-81da-48f777001d49 katmai C3L-01836.MethArray.Green.A C3L-01836 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/78fb1b7a-7014-4667-90f1-8955462cbf39/203027390029_R04C01_Grn.idat 13676246 IDAT NA 78fb1b7a-7014-4667-90f1-8955462cbf39 katmai +C3L-01836.MethArray.Green.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0ffe1538-3497-4520-93ca-12ac44151a15/204372030074_R04C01_Grn.idat 13677880 IDAT NA 0ffe1538-3497-4520-93ca-12ac44151a15 katmai +C3L-01836.MethArray.Green.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4b24c5f2-9ea4-4ecb-bfb2-aa0a597f1ef2/204367490090_R03C01_Grn.idat 13677885 IDAT NA 4b24c5f2-9ea4-4ecb-bfb2-aa0a597f1ef2 katmai C3L-01836.MethArray.Green.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0fc6c07f-eaec-44a6-bf1a-935915738899/202184900127_R04C01_Grn.idat 13676246 IDAT NA 0fc6c07f-eaec-44a6-bf1a-935915738899 katmai C3L-01836.MethArray.Red.A C3L-01836 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7e96551c-9ef4-4fa7-b344-67290ae7819d/203027390029_R04C01_Red.idat 13676246 IDAT NA 7e96551c-9ef4-4fa7-b344-67290ae7819d katmai +C3L-01836.MethArray.Red.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/058b7baf-b6a8-4904-a13c-6f32d3cc9d7b/204372030074_R04C01_Red.idat 13677880 IDAT NA 058b7baf-b6a8-4904-a13c-6f32d3cc9d7b katmai +C3L-01836.MethArray.Red.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/400d51ff-1295-4a0a-b2df-1f1a0a975b9f/204367490090_R03C01_Red.idat 13677885 IDAT NA 400d51ff-1295-4a0a-b2df-1f1a0a975b9f katmai C3L-01836.MethArray.Red.T C3L-01836 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b68bf43a-b285-41a0-b622-39d35dce7808/202184900127_R04C01_Red.idat 13676246 IDAT NA b68bf43a-b285-41a0-b622-39d35dce7808 katmai C3L-01836.miRNA-Seq.A C3L-01836 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d03167d7-e706-45ae-b4ac-1baea839b683/181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L005_R1_001.unaln.bam 159544806 BAM NA d03167d7-e706-45ae-b4ac-1baea839b683 katmai +C3L-01836.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/253cf67e-a8ac-4980-8f79-82b2e6774950/200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L004_R1_001.unaln.bam 291075684 BAM NA 253cf67e-a8ac-4980-8f79-82b2e6774950 katmai +C3L-01836.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2d61528b-198d-4dac-8a54-a6d1e4716a81/200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L004_R1_001.unaln.bam 219403427 BAM NA 2d61528b-198d-4dac-8a54-a6d1e4716a81 katmai C3L-01836.miRNA-Seq.T C3L-01836 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8bc4d187-1dd6-4a76-aa51-f0e158ad0590/181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L008_R1_001.unaln.bam 226158135 BAM NA 8bc4d187-1dd6-4a76-aa51-f0e158ad0590 katmai C3L-01836.RNA-Seq.genomic.A.hg38 C3L-01836 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/6959d231-8d3d-4500-b0e5-3daeed35fed9/fdb8a962-50d7-480d-a5b5-d7d080b41bb8.rna_seq.genomic.gdc_realn.bam 6926681377 BAM hg38 6959d231-8d3d-4500-b0e5-3daeed35fed9 katmai C3L-01836.RNA-Seq.genomic.T.hg38 C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/11e2c835-c493-4ebe-a1c5-d4f1e98876bd/7d93dfb2-a734-4449-9c4f-f65df1a5f049.rna_seq.genomic.gdc_realn.bam 6925640039 BAM hg38 11e2c835-c493-4ebe-a1c5-d4f1e98876bd katmai C3L-01836.RNA-Seq.R1.A C3L-01836 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/2aeeecab-38f1-4ac1-b075-46ae5151bd1a/171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R1_001.fastq.gz 3550419957 FASTQ NA 2aeeecab-38f1-4ac1-b075-46ae5151bd1a katmai +C3L-01836.RNA-Seq.R1.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/29ae1811-9252-44f8-aee8-7419a6f881f0/200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R1_001.fastq.gz 4285952667 FASTQ NA 29ae1811-9252-44f8-aee8-7419a6f881f0 katmai +C3L-01836.RNA-Seq.R1.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/768aa7e6-69e3-4feb-8b45-1c6858776a7d/200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R1_001.fastq.gz 4097422514 FASTQ NA 768aa7e6-69e3-4feb-8b45-1c6858776a7d katmai C3L-01836.RNA-Seq.R1.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/a3e2839a-6453-485b-9a7d-e085f009d98a/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R1_001.fastq.gz 3635126627 FASTQ NA a3e2839a-6453-485b-9a7d-e085f009d98a katmai C3L-01836.RNA-Seq.R2.A C3L-01836 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/9c8f1419-35ba-4a6f-b41f-57473a598e05/171205_UNC32-K00270_0069_BHN2HGBBXX_ATGTCA_S6_L002_R2_001.fastq.gz 3690039175 FASTQ NA 9c8f1419-35ba-4a6f-b41f-57473a598e05 katmai +C3L-01836.RNA-Seq.R2.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/17b69746-ad1c-4716-9bc4-ff423e8bbc65/200519_UNC31-K00269_0279_AHH5VTBBXY_CGGACAAC-TCCGGATT_S17_L005_R2_001.fastq.gz 5055432049 FASTQ NA 17b69746-ad1c-4716-9bc4-ff423e8bbc65 katmai +C3L-01836.RNA-Seq.R2.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/859c5418-0c86-4271-b106-c1baebf4cbb7/200519_UNC31-K00269_0279_AHH5VTBBXY_TAAGTGGT-CTTAAGCC_S19_L005_R2_001.fastq.gz 4752243493 FASTQ NA 859c5418-0c86-4271-b106-c1baebf4cbb7 katmai C3L-01836.RNA-Seq.R2.T C3L-01836 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9bcfe727-df26-44e6-89dd-9cd978ec3659/171011_UNC31-K00269_0086_AHLJLCBBXX_GTGGCC_S8_L006_R2_001.fastq.gz 3808781355 FASTQ NA 9bcfe727-df26-44e6-89dd-9cd978ec3659 katmai C3L-01836.WXS.N.hg38 C3L-01836 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/247f32de-8c96-4795-9a98-7a342e6570ec/d8619652-f544-49a1-83ca-bf3bdaaea21c_gdc_realn.bam 54929211870 BAM hg38 247f32de-8c96-4795-9a98-7a342e6570ec katmai C3L-01836.WXS.T.hg38 C3L-01836 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/c889a7bb-fcd6-4246-94a8-324b1d86ef07/8ec46333-92ee-4b6a-9b5f-3cd668959bcb_gdc_realn.bam 49992051960 BAM hg38 c889a7bb-fcd6-4246-94a8-324b1d86ef07 katmai @@ -3391,16 +3519,26 @@ C3L-01840.WGS.N.hg38 C3L-01840 UCEC WGS blood_normal /diskmnt/Projects/cptac_dow C3L-01840.WGS.T.hg38 C3L-01840 UCEC WGS tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/810231c7-c588-4775-9973-a2356a1ddfc2/b5e15343-b733-4c14-87d8-161b1e37c3be_wgs_gdc_realn.bam 87308457395 BAM hg38 810231c7-c588-4775-9973-a2356a1ddfc2 katmai C3L-01840.WXS.N.hg38 C3L-01840 UCEC WXS blood_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4774dc1a-c467-46bc-8fd5-57b71339bb49/bd1c53fe-d5ab-423d-96ba-114e2b5f8b1a_wxs_gdc_realn.bam 36252189767 BAM hg38 4774dc1a-c467-46bc-8fd5-57b71339bb49 katmai C3L-01840.WXS.T.hg38 C3L-01840 UCEC WXS tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7f428eb9-3cb6-45b0-bdac-3391556ecacd/b5e15343-b733-4c14-87d8-161b1e37c3be_wxs_gdc_realn.bam 56398414014 BAM hg38 7f428eb9-3cb6-45b0-bdac-3391556ecacd katmai +C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/53730193-2e1b-4f6b-abeb-e59fd4f35588/204367460011_R04C01_Grn.idat 13677880 IDAT NA 53730193-2e1b-4f6b-abeb-e59fd4f35588 katmai +C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c6896b39-cccf-4a62-a074-5f136c62596b/204372030070_R04C01_Grn.idat 13677900 IDAT NA c6896b39-cccf-4a62-a074-5f136c62596b katmai C3L-01861.MethArray.Green.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e29fb20a-4aa3-4941-a00f-bff79be1f5af/202234370091_R05C01_Grn.idat 13676231 IDAT NA e29fb20a-4aa3-4941-a00f-bff79be1f5af katmai +C3L-01861.MethArray.Red.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/260c9ecb-f5a1-4371-af85-6fb8e6417def/204367460011_R04C01_Red.idat 13677880 IDAT NA 260c9ecb-f5a1-4371-af85-6fb8e6417def katmai +C3L-01861.MethArray.Red.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f739728a-d1f8-4cb2-9b81-718b8766df47/204372030070_R04C01_Red.idat 13677900 IDAT NA f739728a-d1f8-4cb2-9b81-718b8766df47 katmai C3L-01861.MethArray.Red.T C3L-01861 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6f57a2a7-e892-46ab-9465-536de9d0e0e6/202234370091_R05C01_Red.idat 13676231 IDAT NA 6f57a2a7-e892-46ab-9465-536de9d0e0e6 katmai C3L-01861.miRNA-Seq.A C3L-01861 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/97d610c5-3236-48ac-80d0-a9d6bd344354/181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L005_R1_001.unaln.bam 194998969 BAM NA 97d610c5-3236-48ac-80d0-a9d6bd344354 katmai +C3L-01861.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/73a38291-2a86-46da-9627-836d76c79ce3/200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L001_R1_001.unaln.bam 315870709 BAM NA 73a38291-2a86-46da-9627-836d76c79ce3 katmai +C3L-01861.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cc0a8d45-43d8-4734-a275-2e8e7d5d9fa3/200526_UNC32-K00270_0248_BHH7WFBBXY_CTATAC_S10_L001_R1_001.unaln.bam 234550563 BAM NA cc0a8d45-43d8-4734-a275-2e8e7d5d9fa3 katmai C3L-01861.miRNA-Seq.T C3L-01861 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ad88944a-abb8-4ac6-825a-88fdf2daf161/181119_UNC31-K00269_0165_AH27WCBBXY_CGATGT_S26_L003_R1_001.unaln.bam 270625391 BAM NA ad88944a-abb8-4ac6-825a-88fdf2daf161 katmai C3L-01861.RNA-Seq.genomic.A.hg38 C3L-01861 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/5679dd35-110e-4099-9a4a-4bdbb8a38b12/fc9801f7-f6bb-4a15-a8a9-1986b499393b.rna_seq.genomic.gdc_realn.bam 8155861250 BAM hg38 5679dd35-110e-4099-9a4a-4bdbb8a38b12 katmai C3L-01861.RNA-Seq.genomic.T.hg38 C3L-01861 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d1ed00be-0a17-4c37-a1ed-6d52f41e546b/f7f1b5e6-da6b-4899-9a3e-cd12521614c9.rna_seq.genomic.gdc_realn.bam 9537526980 BAM hg38 d1ed00be-0a17-4c37-a1ed-6d52f41e546b katmai C3L-01861.RNA-Seq.R1.A C3L-01861 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/2ecc3a28-7e0e-4680-9f69-77060ad2835f/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R1_001.fastq.gz 4271755155 FASTQ NA 2ecc3a28-7e0e-4680-9f69-77060ad2835f katmai C3L-01861.RNA-Seq.R1.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/dad117ab-2b82-4007-8738-65dd691734bc/171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R1_001.fastq.gz 4425587923 FASTQ NA dad117ab-2b82-4007-8738-65dd691734bc katmai +C3L-01861.RNA-Seq.R1.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1ad2341c-5b62-4ec7-b0da-7b417d931840/200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R1_001.fastq.gz 3568920690 FASTQ NA 1ad2341c-5b62-4ec7-b0da-7b417d931840 katmai +C3L-01861.RNA-Seq.R1.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e05ca40e-28a6-4ed3-acad-dcaccee06f9f/200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R1_001.fastq.gz 3603210624 FASTQ NA e05ca40e-28a6-4ed3-acad-dcaccee06f9f katmai C3L-01861.RNA-Seq.R2.A C3L-01861 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba/171205_UNC32-K00270_0069_BHN2HGBBXX_GTGGCC_S2_L001_R2_001.fastq.gz 4468740133 FASTQ NA 7ea16c75-8f3d-40ac-83cb-eb1b8103e5ba katmai C3L-01861.RNA-Seq.R2.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/f0a3c65b-b19d-4dd2-b374-45f0bc1056dd/171107_UNC32-K00270_0063_BHLNTCBBXX_GTGGCC_S49_L004_R2_001.fastq.gz 4907942717 FASTQ NA f0a3c65b-b19d-4dd2-b374-45f0bc1056dd katmai +C3L-01861.RNA-Seq.R2.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d63abc1-54c4-447f-8687-683eeec387a5/200519_UNC31-K00269_0280_BHHKGNBBXY_CTCACCAA-CTAGGCAA_S30_L008_R2_001.fastq.gz 4321608798 FASTQ NA 0d63abc1-54c4-447f-8687-683eeec387a5 katmai +C3L-01861.RNA-Seq.R2.T C3L-01861 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bcfffcc7-8d6f-4195-825e-48d10cbc2ad5/200519_UNC31-K00269_0280_BHHKGNBBXY_GAACCGCG-TGACCTTA_S31_L008_R2_001.fastq.gz 4096244295 FASTQ NA bcfffcc7-8d6f-4195-825e-48d10cbc2ad5 katmai C3L-01862.MethArray.Green.T C3L-01862 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e848e74e-5a73-4f4a-a916-b33930a82636/202234370079_R02C01_Grn.idat 13676231 IDAT NA e848e74e-5a73-4f4a-a916-b33930a82636 katmai C3L-01862.MethArray.Red.T C3L-01862 LUAD Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d7de1cac-0c4f-4e22-8c58-872d137e44fd/202234370079_R02C01_Red.idat 13676231 IDAT NA d7de1cac-0c4f-4e22-8c58-872d137e44fd katmai C3L-01862.miRNA-Seq.T C3L-01862 LUAD miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2ffff661-1587-474c-a731-2b9cf09022f4/180724_UNC32-K00270_0106_BHWK3MBBXX_CCAACA_S12_L007_R1_001.unaln.bam 235287641 BAM NA 2ffff661-1587-474c-a731-2b9cf09022f4 katmai @@ -5829,44 +5967,84 @@ C3L-07036.RNA-Seq.R1.A C3L-07036 PDA RNA-Seq tissue_normal /diskmnt/Projects/cpt C3L-07036.RNA-Seq.R2.A C3L-07036 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/55668996-4f4e-4508-9152-634da507607d/200731_UNC31-K00269_0286_AHHWJ2BBXY_TGCGGCGT-CCTCGGTA_S4_L001_R2_001.fastq.gz 3441842587 FASTQ NA 55668996-4f4e-4508-9152-634da507607d katmai C3L-07037.RNA-Seq.R1.A C3L-07037 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/3399328b-16f5-4c7a-8e1f-338368645ed8/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R1_001.fastq.gz 4194791505 FASTQ NA 3399328b-16f5-4c7a-8e1f-338368645ed8 katmai C3L-07037.RNA-Seq.R2.A C3L-07037 PDA RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/db70a6b8-672d-4a13-bd16-bd52d87843fe/200731_UNC31-K00269_0286_AHHWJ2BBXY_CATAATAC-TTCTAACG_S2_L001_R2_001.fastq.gz 4651885575 FASTQ NA db70a6b8-672d-4a13-bd16-bd52d87843fe katmai +C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/54703a27-f4ab-4cbb-adea-1242035925df/204367490093_R04C01_Grn.idat 13677900 IDAT NA 54703a27-f4ab-4cbb-adea-1242035925df katmai +C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/605b2e6a-941f-4a09-80f6-682edbc8f380/204372030072_R02C01_Grn.idat 13677880 IDAT NA 605b2e6a-941f-4a09-80f6-682edbc8f380 katmai +C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f6eaed9e-16f0-4b1f-bb96-86a35c644127/204367490043_R03C01_Grn.idat 13677880 IDAT NA f6eaed9e-16f0-4b1f-bb96-86a35c644127 katmai C3N-00148.MethArray.Green.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3fa87ccb-2393-4f48-957e-812d6cad2eae/202184900104_R08C01_Grn.idat 13676256 IDAT NA 3fa87ccb-2393-4f48-957e-812d6cad2eae katmai +C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/67dcaa43-600e-4513-aa8a-fa39dab8a129/204372030072_R02C01_Red.idat 13677880 IDAT NA 67dcaa43-600e-4513-aa8a-fa39dab8a129 katmai +C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/955ef901-2188-49a2-9201-11cd2f8094f9/204367490043_R03C01_Red.idat 13677880 IDAT NA 955ef901-2188-49a2-9201-11cd2f8094f9 katmai +C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ecd429b3-fc1c-4671-959e-8775ec4cef9e/204367490093_R04C01_Red.idat 13677900 IDAT NA ecd429b3-fc1c-4671-959e-8775ec4cef9e katmai C3N-00148.MethArray.Red.T C3N-00148 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/42e7346d-ce99-406c-bef4-2fa6bc79f095/202184900104_R08C01_Red.idat 13676256 IDAT NA 42e7346d-ce99-406c-bef4-2fa6bc79f095 katmai C3N-00148.miRNA-Seq.A C3N-00148 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5df9e78b-e37d-4284-9eed-64a9a6166eeb/181108_UNC31-K00269_0163_BH23TVBBXY_ATGAGC_S26_L002_R1_001.unaln.bam 189924824 BAM NA 5df9e78b-e37d-4284-9eed-64a9a6166eeb katmai +C3N-00148.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/27fa6e25-69ea-46ca-9d7d-bcf6a2cbdd94/200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L004_R1_001.unaln.bam 216922501 BAM NA 27fa6e25-69ea-46ca-9d7d-bcf6a2cbdd94 katmai +C3N-00148.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cb9a8508-6510-457a-9740-817831f8215e/200526_UNC32-K00270_0248_BHH7WFBBXY_CAGGCG_S4_L004_R1_001.unaln.bam 215706607 BAM NA cb9a8508-6510-457a-9740-817831f8215e katmai +C3N-00148.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f8ac9419-3f47-4dbf-8714-3d727d046dfa/200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L004_R1_001.unaln.bam 164986231 BAM NA f8ac9419-3f47-4dbf-8714-3d727d046dfa katmai C3N-00148.miRNA-Seq.T C3N-00148 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3a781daf-e927-4eae-8a82-bea66bf67dc2/181012_UNC32-K00270_0124_AH223CBBXY_CACTCA_S5_L006_R1_001.unaln.bam 236100123 BAM NA 3a781daf-e927-4eae-8a82-bea66bf67dc2 katmai C3N-00148.RNA-Seq.genomic.A.hg38 C3N-00148 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/0de6a5ce-49b7-4245-92c5-86fb7f959fa4/1c7e30ac-fb93-47d7-9898-540c990d1c29.rna_seq.genomic.gdc_realn.bam 9264237372 BAM hg38 0de6a5ce-49b7-4245-92c5-86fb7f959fa4 katmai C3N-00148.RNA-Seq.genomic.T.hg38 C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/ed0ad172-796a-4170-9b3b-186c2afdbe68/db7c4b7c-9bdd-4d1c-b628-3024afb4b8a3.rna_seq.genomic.gdc_realn.bam 9900787022 BAM hg38 ed0ad172-796a-4170-9b3b-186c2afdbe68 katmai C3N-00148.RNA-Seq.R1.A C3N-00148 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e8912d94-cb0d-43a9-8162-74cfaa687f6b/171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R1_001.fastq.gz 4500742385 FASTQ NA e8912d94-cb0d-43a9-8162-74cfaa687f6b katmai C3N-00148.RNA-Seq.R1.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/48e2576c-57dd-4e80-8362-7c35daed4204/170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R1_001.fastq.gz 4810717249 FASTQ NA 48e2576c-57dd-4e80-8362-7c35daed4204 katmai +C3N-00148.RNA-Seq.R1.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2cdd2b94-10a0-41f6-adb6-6aa717245a40/200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R1_001.fastq.gz 3701454243 FASTQ NA 2cdd2b94-10a0-41f6-adb6-6aa717245a40 katmai +C3N-00148.RNA-Seq.R1.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7057f456-2a17-45fc-9ef7-15142e833631/200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R1_001.fastq.gz 3662990781 FASTQ NA 7057f456-2a17-45fc-9ef7-15142e833631 katmai +C3N-00148.RNA-Seq.R1.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/76502b9a-7e4d-4688-a0e9-18f695e7e2b8/200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R1_001.fastq.gz 4104332900 FASTQ NA 76502b9a-7e4d-4688-a0e9-18f695e7e2b8 katmai C3N-00148.RNA-Seq.R2.A C3N-00148 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/295e5db0-2734-4385-9867-95978059c72f/171212_UNC31-K00269_0102_AHN5MMBBXX_CGATGT_S1_L001_R2_001.fastq.gz 4876089984 FASTQ NA 295e5db0-2734-4385-9867-95978059c72f katmai C3N-00148.RNA-Seq.R2.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a250f5fc-fc5b-45e1-83b7-9139dd06398e/170908_UNC31-K00269_0080_BHLJ52BBXX_GCCAAT_S6_L008_R2_001.fastq.gz 5280330533 FASTQ NA a250f5fc-fc5b-45e1-83b7-9139dd06398e katmai +C3N-00148.RNA-Seq.R2.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2932e604-2fe0-4aa2-90c6-186a4dd73334/200519_UNC31-K00269_0279_AHH5VTBBXY_AATGCCTC-TCGATCCA_S9_L003_R2_001.fastq.gz 4251757262 FASTQ NA 2932e604-2fe0-4aa2-90c6-186a4dd73334 katmai +C3N-00148.RNA-Seq.R2.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/65c1a61a-ffe3-4e34-96cd-1d5452ce0d90/200519_UNC31-K00269_0279_AHH5VTBBXY_CGTTAGAA-TTCAGGTC_S14_L004_R2_001.fastq.gz 4536249627 FASTQ NA 65c1a61a-ffe3-4e34-96cd-1d5452ce0d90 katmai +C3N-00148.RNA-Seq.R2.T C3N-00148 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7872472a-affb-433b-bf1f-b492058828bb/200519_UNC31-K00269_0279_AHH5VTBBXY_TACCGAGG-CCTGAACT_S16_L004_R2_001.fastq.gz 4888105949 FASTQ NA 7872472a-affb-433b-bf1f-b492058828bb katmai C3N-00148.WXS.N.hg38 C3N-00148 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/06dcff89-4b72-4e25-ac00-9f8ad4f4a30c/925a6f92-a5cd-4b65-8fe4-11ff3c4efd2b_gdc_realn.bam 45883027420 BAM hg38 06dcff89-4b72-4e25-ac00-9f8ad4f4a30c katmai C3N-00148.WXS.T.hg38 C3N-00148 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/d32aed5c-6bb2-47ac-aa60-98df1b7e2472/127293c3-8feb-4aa1-8f52-1461eeff35ca_gdc_realn.bam 43598251608 BAM hg38 d32aed5c-6bb2-47ac-aa60-98df1b7e2472 katmai C3N-00149.MethArray.Green.A C3N-00149 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2793cf05-30f8-4d1b-829d-509897c0d575/203027390029_R06C01_Grn.idat 13676246 IDAT NA 2793cf05-30f8-4d1b-829d-509897c0d575 katmai +C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0ff762c9-d7a3-47f8-953a-81430771e8f0/204372030076_R03C01_Grn.idat 13677890 IDAT NA 0ff762c9-d7a3-47f8-953a-81430771e8f0 katmai +C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/21afa015-4a00-48b7-a31d-185b6f371928/204367470132_R03C01_Grn.idat 13677880 IDAT NA 21afa015-4a00-48b7-a31d-185b6f371928 katmai C3N-00149.MethArray.Green.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/80169744-b1d4-4c40-9866-0e729f87393b/202178770079_R04C01_Grn.idat 13676241 IDAT NA 80169744-b1d4-4c40-9866-0e729f87393b katmai C3N-00149.MethArray.Red.A C3N-00149 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c237d6fd-ff1b-452d-9f43-487d768ac621/203027390029_R06C01_Red.idat 13676246 IDAT NA c237d6fd-ff1b-452d-9f43-487d768ac621 katmai +C3N-00149.MethArray.Red.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/457c04a5-d5d7-4f23-a7f0-ca37269ab5d3/204367470132_R03C01_Red.idat 13677880 IDAT NA 457c04a5-d5d7-4f23-a7f0-ca37269ab5d3 katmai +C3N-00149.MethArray.Red.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c7d35b4c-1e53-4824-ae3c-37e3020b3e33/204372030076_R03C01_Red.idat 13677890 IDAT NA c7d35b4c-1e53-4824-ae3c-37e3020b3e33 katmai C3N-00149.MethArray.Red.T C3N-00149 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f1603619-a19a-4ee4-bbd3-886751f75e87/202178770079_R04C01_Red.idat 13676241 IDAT NA f1603619-a19a-4ee4-bbd3-886751f75e87 katmai C3N-00149.miRNA-Seq.A C3N-00149 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e87ec9ab-d4df-4060-bf22-ecebd32049f3/181108_UNC31-K00269_0163_BH23TVBBXY_CAAAAG_S28_L002_R1_001.unaln.bam 191321196 BAM NA e87ec9ab-d4df-4060-bf22-ecebd32049f3 katmai +C3N-00149.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8a2931ef-421e-42ac-bbf9-94d569db08a5/200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L004_R1_001.unaln.bam 330404915 BAM NA 8a2931ef-421e-42ac-bbf9-94d569db08a5 katmai +C3N-00149.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b9a93c6b-f991-4e3e-8626-5bbfcb6f9273/200526_UNC32-K00270_0248_BHH7WFBBXY_CTAGCT_S9_L004_R1_001.unaln.bam 318693839 BAM NA b9a93c6b-f991-4e3e-8626-5bbfcb6f9273 katmai C3N-00149.miRNA-Seq.T C3N-00149 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/372f3c62-16b3-4c5c-8f61-3ec462e46012/181113_UNC31-K00269_0164_AH23NNBBXY_GAGTGG_S47_L002_R1_001.unaln.bam 244767996 BAM NA 372f3c62-16b3-4c5c-8f61-3ec462e46012 katmai C3N-00149.RNA-Seq.genomic.A.hg38 C3N-00149 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/f73086dd-c557-40e5-8d4d-933be75c296a/8f164ae5-1f91-445c-8f02-c281e6b05120.rna_seq.genomic.gdc_realn.bam 5838659425 BAM hg38 f73086dd-c557-40e5-8d4d-933be75c296a katmai C3N-00149.RNA-Seq.genomic.T.hg38 C3N-00149 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/6fc1bd26-c9fa-4bae-921b-3bae0bb0e0d7/650f0999-1b65-4931-91c2-54f9a816af7b.rna_seq.genomic.gdc_realn.bam 11329699832 BAM hg38 6fc1bd26-c9fa-4bae-921b-3bae0bb0e0d7 katmai C3N-00149.RNA-Seq.R1.A C3N-00149 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/81baf6a5-a453-415f-be76-609893ec38ac/171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R1_001.fastq.gz 2946131294 FASTQ NA 81baf6a5-a453-415f-be76-609893ec38ac katmai C3N-00149.RNA-Seq.R1.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/32f8484e-8802-4c31-9950-0c5003ee0a54/170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R1_001.fastq.gz 4478859396 FASTQ NA 32f8484e-8802-4c31-9950-0c5003ee0a54 katmai +C3N-00149.RNA-Seq.R1.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2ac76f97-64f6-4a49-9e87-9ec850b6c55e/200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R1_001.fastq.gz 3375429210 FASTQ NA 2ac76f97-64f6-4a49-9e87-9ec850b6c55e katmai +C3N-00149.RNA-Seq.R1.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a941166b-5b56-45e2-98a7-59ba41c85957/200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R1_001.fastq.gz 3537365441 FASTQ NA a941166b-5b56-45e2-98a7-59ba41c85957 katmai C3N-00149.RNA-Seq.R2.A C3N-00149 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/40b15200-8776-4170-a2e0-aebec6f52f39/171215_UNC32-K00270_0072_AHN3THBBXX_TGACCA_S5_L008_R2_001.fastq.gz 3120262615 FASTQ NA 40b15200-8776-4170-a2e0-aebec6f52f39 katmai C3N-00149.RNA-Seq.R2.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/2ee5d97a-9a01-41f0-8211-bfd983276c3f/170908_UNC31-K00269_0080_BHLJ52BBXX_GGCTAC_S1_L007_R2_001.fastq.gz 5047149306 FASTQ NA 2ee5d97a-9a01-41f0-8211-bfd983276c3f katmai +C3N-00149.RNA-Seq.R2.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0e99e57d-7be8-4722-a1ae-215713fd506f/200519_UNC31-K00269_0279_AHH5VTBBXY_TCGTAGTG-AGACTTGG_S20_L005_R2_001.fastq.gz 4166328187 FASTQ NA 0e99e57d-7be8-4722-a1ae-215713fd506f katmai +C3N-00149.RNA-Seq.R2.T C3N-00149 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5aee2bb7-8d0c-4980-b9df-40433e73cc3f/200519_UNC31-K00269_0279_AHH5VTBBXY_CTACGACA-GAGTCCAA_S18_L005_R2_001.fastq.gz 3945741454 FASTQ NA 5aee2bb7-8d0c-4980-b9df-40433e73cc3f katmai C3N-00149.WXS.N.hg38 C3N-00149 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/41500ac9-600c-48df-959c-c9b85224b648/59f6a8d8-d2ee-44ae-8a9d-473c5812c66a_gdc_realn.bam 28851974478 BAM hg38 41500ac9-600c-48df-959c-c9b85224b648 katmai C3N-00149.WXS.T.hg38 C3N-00149 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/601c9136-7233-4309-b694-ea5eeaa9e2b4/449ffb6b-9f0e-4cc3-8632-720344de67ca_gdc_realn.bam 29971126713 BAM hg38 601c9136-7233-4309-b694-ea5eeaa9e2b4 katmai C3N-00150.MethArray.Green.A C3N-00150 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8a9a7add-83a3-4366-93ef-fe4c6af83dbf/203027390029_R05C01_Grn.idat 13676246 IDAT NA 8a9a7add-83a3-4366-93ef-fe4c6af83dbf katmai +C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/45e98501-5d86-48d1-ab41-e3129c5f6f05/204367490056_R03C01_Grn.idat 13677895 IDAT NA 45e98501-5d86-48d1-ab41-e3129c5f6f05 katmai +C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/86776df8-1b6a-4832-a1bc-1a5d2bfa3b27/204367490030_R01C01_Grn.idat 13677885 IDAT NA 86776df8-1b6a-4832-a1bc-1a5d2bfa3b27 katmai +C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e78b8b17-bfb6-4bdc-ae5b-19b21216e3db/204367490061_R01C01_Grn.idat 13677885 IDAT NA e78b8b17-bfb6-4bdc-ae5b-19b21216e3db katmai C3N-00150.MethArray.Green.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fd558bdd-3f77-4bd6-b034-47c8baba30aa/202184990008_R05C01_Grn.idat 13676216 IDAT NA fd558bdd-3f77-4bd6-b034-47c8baba30aa katmai C3N-00150.MethArray.Red.A C3N-00150 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/69b4770c-6aa2-47d7-af17-3c9c464ae0b8/203027390029_R05C01_Red.idat 13676246 IDAT NA 69b4770c-6aa2-47d7-af17-3c9c464ae0b8 katmai +C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3152a092-f7eb-4fd9-a32c-b9b073974a02/204367490061_R01C01_Red.idat 13677885 IDAT NA 3152a092-f7eb-4fd9-a32c-b9b073974a02 katmai +C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/85b2fa7a-fed3-4cf6-a57c-2e1e7b02821b/204367490056_R03C01_Red.idat 13677895 IDAT NA 85b2fa7a-fed3-4cf6-a57c-2e1e7b02821b katmai +C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9a5e72fb-9938-48ee-b44f-d1833aafa011/204367490030_R01C01_Red.idat 13677885 IDAT NA 9a5e72fb-9938-48ee-b44f-d1833aafa011 katmai C3N-00150.MethArray.Red.T C3N-00150 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/05122d3c-3a39-4287-9fbf-7da47391e803/202184990008_R05C01_Red.idat 13676216 IDAT NA 05122d3c-3a39-4287-9fbf-7da47391e803 katmai C3N-00150.miRNA-Seq.A C3N-00150 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3898782d-7339-45da-b974-7d614b6b2bb0/181108_UNC31-K00269_0163_BH23TVBBXY_CTTGTA_S12_L003_R1_001.unaln.bam 207117983 BAM NA 3898782d-7339-45da-b974-7d614b6b2bb0 katmai +C3N-00150.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8dc713a6-31b1-40ac-86b3-1738601a18a6/200526_UNC32-K00270_0248_BHH7WFBBXY_TAATCG_S15_L001_R1_001.unaln.bam 311456281 BAM NA 8dc713a6-31b1-40ac-86b3-1738601a18a6 katmai +C3N-00150.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c71d4bcc-731e-45d1-8bd5-9a66047e9c5a/200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L005_R1_001.unaln.bam 262975676 BAM NA c71d4bcc-731e-45d1-8bd5-9a66047e9c5a katmai +C3N-00150.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f8047bac-2075-434f-954a-1daab31cb4a0/200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L005_R1_001.unaln.bam 380182361 BAM NA f8047bac-2075-434f-954a-1daab31cb4a0 katmai C3N-00150.miRNA-Seq.T C3N-00150 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/53605880-e082-4afe-bd6a-c36f38cca0a1/181113_UNC31-K00269_0164_AH23NNBBXY_TCCCGA_S22_L001_R1_001.unaln.bam 198592751 BAM NA 53605880-e082-4afe-bd6a-c36f38cca0a1 katmai C3N-00150.RNA-Seq.genomic.A.hg38 C3N-00150 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/fe19d7e5-ed4b-4c13-9029-be75648f0c03/54c6dbce-7f19-4862-8c42-628716ad4cb7.rna_seq.genomic.gdc_realn.bam 7545976791 BAM hg38 fe19d7e5-ed4b-4c13-9029-be75648f0c03 katmai C3N-00150.RNA-Seq.genomic.T.hg38 C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/8a7e025c-892b-459a-bcd2-ae9bda7fc4ad/577c89ab-c3ae-4b1f-9ac1-7a1f2fcbc148.rna_seq.genomic.gdc_realn.bam 6641663545 BAM hg38 8a7e025c-892b-459a-bcd2-ae9bda7fc4ad katmai C3N-00150.RNA-Seq.R1.A C3N-00150 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/48645880-9721-4027-8168-48b937146d8f/171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R1_001.fastq.gz 3764973522 FASTQ NA 48645880-9721-4027-8168-48b937146d8f katmai C3N-00150.RNA-Seq.R1.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/150293f5-6224-4de0-a778-9206a16aa41a/170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R1_001.fastq.gz 3249194491 FASTQ NA 150293f5-6224-4de0-a778-9206a16aa41a katmai +C3N-00150.RNA-Seq.R1.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/781182a7-69b1-48db-bdc5-3857e93951b8/200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R1_001.fastq.gz 4987071225 FASTQ NA 781182a7-69b1-48db-bdc5-3857e93951b8 katmai +C3N-00150.RNA-Seq.R1.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f2399c07-4ee4-4777-8edb-88a422f1c979/200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R1_001.fastq.gz 4912531183 FASTQ NA f2399c07-4ee4-4777-8edb-88a422f1c979 katmai +C3N-00150.RNA-Seq.R1.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fc944036-cd67-4263-b94e-cec2d6eaa30f/200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R1_001.fastq.gz 3969540349 FASTQ NA fc944036-cd67-4263-b94e-cec2d6eaa30f katmai C3N-00150.RNA-Seq.R2.A C3N-00150 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/d615fdfa-8133-421e-b1e7-fb8fcb83b92a/171212_UNC31-K00269_0102_AHN5MMBBXX_CTTGTA_S14_L004_R2_001.fastq.gz 4017114783 FASTQ NA d615fdfa-8133-421e-b1e7-fb8fcb83b92a katmai C3N-00150.RNA-Seq.R2.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/dcc3c017-ead2-4264-89f0-6b97c01e4005/170830_UNC31-K00269_0078_AHLCVMBBXX_ATTCCT_S12_L003_R2_001.fastq.gz 3523187235 FASTQ NA dcc3c017-ead2-4264-89f0-6b97c01e4005 katmai +C3N-00150.RNA-Seq.R2.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/28c45fe7-ca60-4a75-91dc-7132d592c14d/200518_UNC32-K00270_0247_AHH573BBXY_TCTCTACT-CGCGGTTC_S38_L006_R2_001.fastq.gz 4592438801 FASTQ NA 28c45fe7-ca60-4a75-91dc-7132d592c14d katmai +C3N-00150.RNA-Seq.R2.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2e50309f-29d7-44cd-a1aa-4bb6118e5d78/200518_UNC32-K00270_0247_AHH573BBXY_GACCTGAA-TTGGTGAG_S37_L006_R2_001.fastq.gz 5833583567 FASTQ NA 2e50309f-29d7-44cd-a1aa-4bb6118e5d78 katmai +C3N-00150.RNA-Seq.R2.T C3N-00150 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9fb17392-f2d0-4d12-8503-aab183708848/200608_UNC31-K00269_0281_AHH5NFBBXY_CGCTATGT-TCCGACAC_S2_L001_R2_001.fastq.gz 5975142522 FASTQ NA 9fb17392-f2d0-4d12-8503-aab183708848 katmai C3N-00150.WXS.N.hg38 C3N-00150 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/33187984-635f-4440-b9d6-5798acf8df20/3810cfb3-a774-44ea-9122-965669d70781_gdc_realn.bam 34453307020 BAM hg38 33187984-635f-4440-b9d6-5798acf8df20 katmai C3N-00150.WXS.T.hg38 C3N-00150 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/b2863f3c-46e2-44e6-9669-702996e320b1/ff4668a7-c6a6-42a8-b0a2-87e2ef2e888a_gdc_realn.bam 45301042702 BAM hg38 b2863f3c-46e2-44e6-9669-702996e320b1 katmai C3N-00151.MethArray.Green.T C3N-00151 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/631b2ed0-4fea-4ff5-af59-a9795416b0d1/202178770100_R05C01_Grn.idat 13676233 IDAT NA 631b2ed0-4fea-4ff5-af59-a9795416b0d1 katmai @@ -5907,16 +6085,31 @@ C3N-00167.RNA-Seq.R2.A C3N-00167 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00167.RNA-Seq.R2.T C3N-00167 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/bdaf1927-26a6-4947-bdad-0956e610efc0/170823_UNC31-K00269_0076_BHLCTFBBXX_CGATGT_S5_L002_R2_001.fastq.gz 4866437509 FASTQ NA bdaf1927-26a6-4947-bdad-0956e610efc0 katmai C3N-00167.WXS.N.hg38 C3N-00167 LUAD WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/c787fccf-de43-4170-93af-fa09eccdbe10/ec89929f-7eaa-44e9-bee0-98a39da5ee6f_gdc_realn.bam 35790226008 BAM hg38 c787fccf-de43-4170-93af-fa09eccdbe10 katmai C3N-00167.WXS.T.hg38 C3N-00167 LUAD WXS tumor /diskmnt/Projects/cptac/GDC_import/data/96d46109-6c4b-4e88-bcbe-91be63779414/f674b5fd-beb5-48ec-834e-b6ebdb8e9056_gdc_realn.bam 32000296946 BAM hg38 96d46109-6c4b-4e88-bcbe-91be63779414 katmai +C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7dc13dc4-8848-4ac0-a936-244da8cd5d0e/204372030013_R04C01_Grn.idat 13677895 IDAT NA 7dc13dc4-8848-4ac0-a936-244da8cd5d0e katmai +C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/af0d43ec-a762-43c3-903e-3be2c62336f5/204367490082_R04C01_Grn.idat 13677900 IDAT NA af0d43ec-a762-43c3-903e-3be2c62336f5 katmai +C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc3e9a48-f554-49f7-8fd1-cb31a25a6f09/204367470157_R01C01_Grn.idat 13677880 IDAT NA dc3e9a48-f554-49f7-8fd1-cb31a25a6f09 katmai C3N-00168.MethArray.Green.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/412dab18-7159-4dfa-add4-91b3b616bf44/202178770100_R03C01_Grn.idat 13676231 IDAT NA 412dab18-7159-4dfa-add4-91b3b616bf44 katmai +C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a4045b23-b779-4eb5-bed9-ed2c5bba450f/204367470157_R01C01_Red.idat 13677880 IDAT NA a4045b23-b779-4eb5-bed9-ed2c5bba450f katmai +C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a56050d4-9124-4b45-b898-6cc07be7db3c/204367490082_R04C01_Red.idat 13677900 IDAT NA a56050d4-9124-4b45-b898-6cc07be7db3c katmai +C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c3964b12-32a9-4a10-b6e5-ca08f3c6d218/204372030013_R04C01_Red.idat 13677895 IDAT NA c3964b12-32a9-4a10-b6e5-ca08f3c6d218 katmai C3N-00168.MethArray.Red.T C3N-00168 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/52cb9e3f-37dd-46cd-a139-db2295a97802/202178770100_R03C01_Red.idat 13676231 IDAT NA 52cb9e3f-37dd-46cd-a139-db2295a97802 katmai C3N-00168.miRNA-Seq.A C3N-00168 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/51b4106c-4afd-44e5-9665-dafe1058546b/181108_UNC31-K00269_0163_BH23TVBBXY_TCGGCA_S48_L004_R1_001.unaln.bam 183265466 BAM NA 51b4106c-4afd-44e5-9665-dafe1058546b katmai +C3N-00168.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/011ccbdd-2a34-4132-b53a-169196fd4cb1/200526_UNC32-K00270_0248_BHH7WFBBXY_GGCTAC_S43_L003_R1_001.unaln.bam 282708142 BAM NA 011ccbdd-2a34-4132-b53a-169196fd4cb1 katmai C3N-00168.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3d5b4bcf-8dfa-4223-97c4-69c0e9b5e53a/181012_UNC32-K00270_0124_AH223CBBXY_ACTTGA_S29_L004_R1_001.unaln.bam 264928279 BAM NA 3d5b4bcf-8dfa-4223-97c4-69c0e9b5e53a katmai +C3N-00168.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9003572f-a41c-47ab-bb5c-64474a1e2e62/200526_UNC32-K00270_0248_BHH7WFBBXY_TAGCTT_S44_L003_R1_001.unaln.bam 357275569 BAM NA 9003572f-a41c-47ab-bb5c-64474a1e2e62 katmai +C3N-00168.miRNA-Seq.T C3N-00168 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f2e0266a-63ba-4aaf-be09-f3183a98c1e0/200526_UNC32-K00270_0248_BHH7WFBBXY_GATCAG_S13_L003_R1_001.unaln.bam 199304708 BAM NA f2e0266a-63ba-4aaf-be09-f3183a98c1e0 katmai C3N-00168.RNA-Seq.genomic.A.hg38 C3N-00168 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/a0804327-8b35-4d43-8ce5-10da502dfdff/ef8eedd1-bdf1-41b9-bc86-26ff77ad3b64.rna_seq.genomic.gdc_realn.bam 6765887155 BAM hg38 a0804327-8b35-4d43-8ce5-10da502dfdff katmai C3N-00168.RNA-Seq.genomic.T.hg38 C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/dcd3839c-c8e2-41f5-96dd-feaf691348c1/7b0fea47-8cdd-408e-98cb-2c19f88e9c10.rna_seq.genomic.gdc_realn.bam 7971280949 BAM hg38 dcd3839c-c8e2-41f5-96dd-feaf691348c1 katmai C3N-00168.RNA-Seq.R1.A C3N-00168 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/dbb0640c-e567-48bf-9a78-a36fb22cb612/171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R1_001.fastq.gz 3345283097 FASTQ NA dbb0640c-e567-48bf-9a78-a36fb22cb612 katmai C3N-00168.RNA-Seq.R1.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/c5ed3de6-ac9f-48c5-923c-79f0d45c0929/170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R1_001.fastq.gz 3864148159 FASTQ NA c5ed3de6-ac9f-48c5-923c-79f0d45c0929 katmai +C3N-00168.RNA-Seq.R1.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/06b7bc41-372f-4272-974c-3403b43fcc72/200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R1_001.fastq.gz 3513323682 FASTQ NA 06b7bc41-372f-4272-974c-3403b43fcc72 katmai +C3N-00168.RNA-Seq.R1.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2/200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R1_001.fastq.gz 4364226137 FASTQ NA 7c3020d8-ddfa-4c72-bc6a-04f349f4a1f2 katmai +C3N-00168.RNA-Seq.R1.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e97e9e36-b700-4168-af27-f3499251270f/200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R1_001.fastq.gz 3629532073 FASTQ NA e97e9e36-b700-4168-af27-f3499251270f katmai C3N-00168.RNA-Seq.R2.A C3N-00168 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/54ebbfd3-243e-4136-a4ec-896075f4a319/171212_UNC31-K00269_0102_AHN5MMBBXX_ATTCCT_S3_L007_R2_001.fastq.gz 3499237068 FASTQ NA 54ebbfd3-243e-4136-a4ec-896075f4a319 katmai C3N-00168.RNA-Seq.R2.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c/170818_UNC32-K00270_0051_BHLCCHBBXX_CGATGT_S15_L004_R2_001.fastq.gz 4262014354 FASTQ NA b9e5e48d-e2ee-4478-b3fe-5d4a04cc6e8c katmai +C3N-00168.RNA-Seq.R2.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/15de8ab5-f8ea-483c-9ce1-0bde72a71a7a/200519_UNC31-K00269_0280_BHHKGNBBXY_CATAATAC-TTCTAACG_S6_L002_R2_001.fastq.gz 4211308110 FASTQ NA 15de8ab5-f8ea-483c-9ce1-0bde72a71a7a katmai +C3N-00168.RNA-Seq.R2.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/15f273ef-9b19-4757-890a-0372f73b4163/200519_UNC31-K00269_0280_BHHKGNBBXY_GATCTATC-ATGAGGCT_S7_L002_R2_001.fastq.gz 3996998381 FASTQ NA 15f273ef-9b19-4757-890a-0372f73b4163 katmai +C3N-00168.RNA-Seq.R2.T C3N-00168 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/381701d8-7529-441b-93c2-657e05b87270/200519_UNC31-K00269_0280_BHHKGNBBXY_TGCGGCGT-CCTCGGTA_S8_L002_R2_001.fastq.gz 5091998320 FASTQ NA 381701d8-7529-441b-93c2-657e05b87270 katmai C3N-00168.WXS.N.hg38 C3N-00168 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/1fb9529e-f39e-4033-bd25-5e8a83dd1ea2/9c909c63-b574-4d09-ba11-1cacb92a327a_gdc_realn.bam 31284464630 BAM hg38 1fb9529e-f39e-4033-bd25-5e8a83dd1ea2 katmai C3N-00168.WXS.T.hg38 C3N-00168 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/8c93a797-778d-4b3f-a018-006a6e45d827/b3eac668-b97c-4ca0-a475-4f3415c8eb65_gdc_realn.bam 35776200041 BAM hg38 8c93a797-778d-4b3f-a018-006a6e45d827 katmai C3N-00169.MethArray.Green.A C3N-00169 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/188a30d0-f201-4d53-87c9-5fca0c9babcc/203027390034_R03C01_Grn.idat 13676226 IDAT NA 188a30d0-f201-4d53-87c9-5fca0c9babcc katmai @@ -5959,16 +6152,26 @@ C3N-00175.RNA-Seq.R2.A C3N-00175 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00175.RNA-Seq.R2.T C3N-00175 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/ff2a0fdc-1273-4b4d-bf82-18edeff7e15e/171011_UNC31-K00269_0086_AHLJLCBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 4028284906 FASTQ NA ff2a0fdc-1273-4b4d-bf82-18edeff7e15e katmai C3N-00175.WXS.N.hg38 C3N-00175 LUAD WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/24538492-8d08-4e27-a491-5777be4e7ef7/6597d396-2d89-4fc9-b95a-03945f2de357_gdc_realn.bam 38865744717 BAM hg38 24538492-8d08-4e27-a491-5777be4e7ef7 katmai C3N-00175.WXS.T.hg38 C3N-00175 LUAD WXS tumor /diskmnt/Projects/cptac/GDC_import/data/95010f7e-be2f-43c0-b865-99fe950b2aac/0750c130-b7f0-4f82-9579-188f3e1705e0_gdc_realn.bam 33129120813 BAM hg38 95010f7e-be2f-43c0-b865-99fe950b2aac katmai +C3N-00177.MethArray.Green.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5dbad71a-9e2f-4fbd-9b43-a93aa49871e1/204372030127_R01C01_Grn.idat 13677880 IDAT NA 5dbad71a-9e2f-4fbd-9b43-a93aa49871e1 katmai +C3N-00177.MethArray.Green.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fb185869-c601-4b10-a7db-d29290abb158/204372030015_R01C01_Grn.idat 13677905 IDAT NA fb185869-c601-4b10-a7db-d29290abb158 katmai C3N-00177.MethArray.Green.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2e2ab89d-69cd-4444-b362-132710728236/202163530120_R02C01_Grn.idat 13676216 IDAT NA 2e2ab89d-69cd-4444-b362-132710728236 katmai +C3N-00177.MethArray.Red.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/650b2380-5cb8-4293-9962-37751da2eb9b/204372030127_R01C01_Red.idat 13677880 IDAT NA 650b2380-5cb8-4293-9962-37751da2eb9b katmai +C3N-00177.MethArray.Red.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f90a1a63-9670-46b4-87b3-e4559d65c14a/204372030015_R01C01_Red.idat 13677905 IDAT NA f90a1a63-9670-46b4-87b3-e4559d65c14a katmai C3N-00177.MethArray.Red.T C3N-00177 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/37c14ea5-039b-4d47-be5d-b4393cfc07ae/202163530120_R02C01_Red.idat 13676216 IDAT NA 37c14ea5-039b-4d47-be5d-b4393cfc07ae katmai C3N-00177.miRNA-Seq.A C3N-00177 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bae96ec4-bd0b-4612-a9be-b4910a352c3e/181108_UNC31-K00269_0163_BH23TVBBXY_ATCACG_S1_L003_R1_001.unaln.bam 175724852 BAM NA bae96ec4-bd0b-4612-a9be-b4910a352c3e katmai +C3N-00177.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/69762e2a-0ebe-4992-b488-b2254a56fc73/200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L003_R1_001.unaln.bam 296557040 BAM NA 69762e2a-0ebe-4992-b488-b2254a56fc73 katmai +C3N-00177.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d4160895-9eb9-4926-a951-7abd4496d2cb/200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L003_R1_001.unaln.bam 252516870 BAM NA d4160895-9eb9-4926-a951-7abd4496d2cb katmai C3N-00177.miRNA-Seq.T C3N-00177 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/03674905-7401-4bb7-97dc-e98860c70f0f/181012_UNC32-K00270_0124_AH223CBBXY_GATCAG_S30_L004_R1_001.unaln.bam 197900007 BAM NA 03674905-7401-4bb7-97dc-e98860c70f0f katmai C3N-00177.RNA-Seq.genomic.A.hg38 C3N-00177 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/d7cbfb82-abcb-4299-8fd0-9b4b859818cc/6f16860a-aa73-4f92-b81f-a6825e336c6d.rna_seq.genomic.gdc_realn.bam 8880270251 BAM hg38 d7cbfb82-abcb-4299-8fd0-9b4b859818cc katmai C3N-00177.RNA-Seq.genomic.T.hg38 C3N-00177 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/64c8ed81-5893-4eb3-920a-63325e5579b8/b4a4cc2b-77f6-41d4-bb6c-669c593c592d.rna_seq.genomic.gdc_realn.bam 9176000213 BAM hg38 64c8ed81-5893-4eb3-920a-63325e5579b8 katmai C3N-00177.RNA-Seq.R1.A C3N-00177 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/1b370e43-38d6-41da-b8b2-06f202915f09/171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R1_001.fastq.gz 4582858913 FASTQ NA 1b370e43-38d6-41da-b8b2-06f202915f09 katmai C3N-00177.RNA-Seq.R1.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/b8a098a2-0c11-491d-bc3a-d3c21eb5a586/170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R1_001.fastq.gz 4263901863 FASTQ NA b8a098a2-0c11-491d-bc3a-d3c21eb5a586 katmai +C3N-00177.RNA-Seq.R1.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/159f5da6-9d77-46ca-9686-54a96c23a746/200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R1_001.fastq.gz 3912700020 FASTQ NA 159f5da6-9d77-46ca-9686-54a96c23a746 katmai +C3N-00177.RNA-Seq.R1.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5168c8a9-b730-40ea-aab2-8ef26109a4e0/200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R1_001.fastq.gz 3145536294 FASTQ NA 5168c8a9-b730-40ea-aab2-8ef26109a4e0 katmai C3N-00177.RNA-Seq.R2.A C3N-00177 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/028bb703-224e-41ac-9eef-2733fa19b0e3/171212_UNC31-K00269_0102_AHN5MMBBXX_ATCACG_S2_L007_R2_001.fastq.gz 4068186798 FASTQ NA 028bb703-224e-41ac-9eef-2733fa19b0e3 katmai C3N-00177.RNA-Seq.R2.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/de966bf1-639f-4af1-ac68-47e9ab1b9c34/170818_UNC32-K00270_0051_BHLCCHBBXX_TTAGGC_S14_L004_R2_001.fastq.gz 4692956854 FASTQ NA de966bf1-639f-4af1-ac68-47e9ab1b9c34 katmai +C3N-00177.RNA-Seq.R2.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/91158ace-2be6-4c55-9843-3ba72f96210e/200519_UNC31-K00269_0280_BHHKGNBBXY_AGCTCGCT-GCAGAATC_S5_L002_R2_001.fastq.gz 4483396676 FASTQ NA 91158ace-2be6-4c55-9843-3ba72f96210e katmai +C3N-00177.RNA-Seq.R2.T C3N-00177 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d4133ba7-00da-4152-9808-f7ae0c7f56dd/200519_UNC31-K00269_0280_BHHKGNBBXY_CGGAACTG-CACTACGA_S10_L003_R2_001.fastq.gz 3680735728 FASTQ NA d4133ba7-00da-4152-9808-f7ae0c7f56dd katmai C3N-00177.WXS.N.hg38 C3N-00177 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/eadf6adc-c1f6-4e35-95d4-586f0a56c328/6cff16d4-b72c-4bb6-90ef-6c53ca2b7d65_gdc_realn.bam 32589913441 BAM hg38 eadf6adc-c1f6-4e35-95d4-586f0a56c328 katmai C3N-00177.WXS.T.hg38 C3N-00177 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/323a01c8-765c-46d4-af30-cd27c56b529b/e4eff64c-93e3-4395-840d-7e7ce9ea9a2e_gdc_realn.bam 28061605475 BAM hg38 323a01c8-765c-46d4-af30-cd27c56b529b katmai C3N-00179.MethArray.Green.T C3N-00179 CM Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fb8958aa-8382-49b9-a936-01bfb417ac86/202178770100_R06C01_Grn.idat 13676235 IDAT NA fb8958aa-8382-49b9-a936-01bfb417ac86 katmai @@ -5997,16 +6200,25 @@ C3N-00180.RNA-Seq.R2.A C3N-00180 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00180.RNA-Seq.R2.T C3N-00180 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1d1a0d32-fefd-4f8a-9d35-31734b685d02/170830_UNC31-K00269_0078_AHLCVMBBXX_TGACCA_S7_L008_R2_001.fastq.gz 4513843874 FASTQ NA 1d1a0d32-fefd-4f8a-9d35-31734b685d02 katmai C3N-00180.WXS.N.hg38 C3N-00180 LUAD WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/4c397512-4468-40e1-aca6-d26ab9da1aa3/17383aa4-7eb8-4b1c-9d16-85970c936aba_gdc_realn.bam 51703140057 BAM hg38 4c397512-4468-40e1-aca6-d26ab9da1aa3 katmai C3N-00180.WXS.T.hg38 C3N-00180 LUAD WXS tumor /diskmnt/Projects/cptac/GDC_import/data/163dbc0f-5a12-40e7-8b62-880e21db7cdb/1f25a90e-1fea-4361-b8d3-4b14350454dd_gdc_realn.bam 40356955153 BAM hg38 163dbc0f-5a12-40e7-8b62-880e21db7cdb katmai +C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/04b547a0-8925-41bd-90a2-c03fed68b079/204367490057_R05C01_Grn.idat 13677905 IDAT NA 04b547a0-8925-41bd-90a2-c03fed68b079 katmai +C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/086e61f9-2ea0-429a-929f-b41f394e7262/204372030076_R07C01_Grn.idat 13677890 IDAT NA 086e61f9-2ea0-429a-929f-b41f394e7262 katmai C3N-00194.MethArray.Green.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c85167c7-7804-42de-926e-fb8b99657e3e/202178770109_R02C01_Grn.idat 13676231 IDAT NA c85167c7-7804-42de-926e-fb8b99657e3e katmai +C3N-00194.MethArray.Red.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6398a66e-11da-411f-9ba1-ab5d587d9dc7/204367490057_R05C01_Red.idat 13677905 IDAT NA 6398a66e-11da-411f-9ba1-ab5d587d9dc7 katmai +C3N-00194.MethArray.Red.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/63f62462-e276-4816-9bf7-5e64787066a1/204372030076_R07C01_Red.idat 13677890 IDAT NA 63f62462-e276-4816-9bf7-5e64787066a1 katmai C3N-00194.MethArray.Red.T C3N-00194 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6a015b94-23ce-436a-8407-b1bc2d772e2b/202178770109_R02C01_Red.idat 13676231 IDAT NA 6a015b94-23ce-436a-8407-b1bc2d772e2b katmai C3N-00194.miRNA-Seq.A C3N-00194 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/14938d34-2c4f-491c-aa00-4a16a477821b/181108_UNC31-K00269_0163_BH23TVBBXY_CACTCA_S32_L004_R1_001.unaln.bam 206654645 BAM NA 14938d34-2c4f-491c-aa00-4a16a477821b katmai +C3N-00194.miRNA-Seq.T C3N-00194 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5eaf89e1-2e7b-4cf2-8f16-86186018e889/200526_UNC32-K00270_0248_BHH7WFBBXY_CTCAGA_S11_L001_R1_001.unaln.bam 354369445 BAM NA 5eaf89e1-2e7b-4cf2-8f16-86186018e889 katmai C3N-00194.miRNA-Seq.T C3N-00194 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/de91a0d6-d235-4f68-8023-6545e1f256aa/181113_UNC31-K00269_0164_AH23NNBBXY_GACGAC_S17_L003_R1_001.unaln.bam 213056282 BAM NA de91a0d6-d235-4f68-8023-6545e1f256aa katmai C3N-00194.RNA-Seq.genomic.A.hg38 C3N-00194 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/9370e8de-89a6-44a2-a2dd-5cdb4b003009/e463f23e-7642-4cc4-a686-33608bf69e65.rna_seq.genomic.gdc_realn.bam 7478387463 BAM hg38 9370e8de-89a6-44a2-a2dd-5cdb4b003009 katmai C3N-00194.RNA-Seq.genomic.T.hg38 C3N-00194 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/8f84af41-a22f-433a-bd62-006515571a6a/302e9ea2-a33d-432d-8a35-f66da055659f.rna_seq.genomic.gdc_realn.bam 7750979083 BAM hg38 8f84af41-a22f-433a-bd62-006515571a6a katmai C3N-00194.RNA-Seq.R1.A C3N-00194 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/f731dbe4-b17a-4ea3-86b9-b59a81e70774/171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R1_001.fastq.gz 3773427215 FASTQ NA f731dbe4-b17a-4ea3-86b9-b59a81e70774 katmai C3N-00194.RNA-Seq.R1.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/43a866e7-11b6-48b3-81c2-377c378f1dba/170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R1_001.fastq.gz 4083620064 FASTQ NA 43a866e7-11b6-48b3-81c2-377c378f1dba katmai +C3N-00194.RNA-Seq.R1.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/060a52e5-6ab1-4d99-b8b0-673ef07e6fcc/200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R1_001.fastq.gz 3591666060 FASTQ NA 060a52e5-6ab1-4d99-b8b0-673ef07e6fcc katmai +C3N-00194.RNA-Seq.R1.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/30ae7b78-98bd-4813-b118-7ad3f4c08b1d/200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R1_001.fastq.gz 3845736661 FASTQ NA 30ae7b78-98bd-4813-b118-7ad3f4c08b1d katmai C3N-00194.RNA-Seq.R2.A C3N-00194 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/2c87c0be-8651-48c6-bf47-58d04431df4b/171208_UNC32-K00270_0071_BHN7K5BBXX_ACTTGA_S51_L006_R2_001.fastq.gz 4015911822 FASTQ NA 2c87c0be-8651-48c6-bf47-58d04431df4b katmai C3N-00194.RNA-Seq.R2.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/293d2b6b-a6dd-4849-a306-3bdb55eb8c9f/170818_UNC32-K00270_0050_AHL2FHBBXX_GCCAAT_S18_L007_R2_001.fastq.gz 4432478207 FASTQ NA 293d2b6b-a6dd-4849-a306-3bdb55eb8c9f katmai +C3N-00194.RNA-Seq.R2.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0e6a7015-d66e-41e9-8a38-844916f4d874/200519_UNC31-K00269_0280_BHHKGNBBXY_TCTGTTGG-TCGAATGG_S32_L008_R2_001.fastq.gz 4609898999 FASTQ NA 0e6a7015-d66e-41e9-8a38-844916f4d874 katmai +C3N-00194.RNA-Seq.R2.T C3N-00194 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/799cae3c-ac8c-4fd6-aa65-826a415e4fe2/200519_UNC31-K00269_0280_BHHKGNBBXY_GTCTACAC-GCCAAGGT_S20_L005_R2_001.fastq.gz 4153593395 FASTQ NA 799cae3c-ac8c-4fd6-aa65-826a415e4fe2 katmai C3N-00194.WXS.N.hg38 C3N-00194 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/f9ca8cbc-f618-4729-8a2d-0b30eb713436/e56a3c11-9494-43fb-899a-fddd5544db14_gdc_realn.bam 35659231947 BAM hg38 f9ca8cbc-f618-4729-8a2d-0b30eb713436 katmai C3N-00194.WXS.T.hg38 C3N-00194 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/1062aea7-f6db-438c-88bb-1c8ccbaf7066/0b810b2c-1913-41fb-9c18-531ad23c35a2_gdc_realn.bam 33894653231 BAM hg38 1062aea7-f6db-438c-88bb-1c8ccbaf7066 katmai C3N-00198.MethArray.Green.T C3N-00198 PDA Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/cd8be8ec-1e0b-446b-97f9-74c58f74b580/202184990066_R06C01_Grn.idat 13676216 IDAT NA cd8be8ec-1e0b-446b-97f9-74c58f74b580 katmai @@ -6305,23 +6517,53 @@ C3N-00309.WGS.N.hg38 C3N-00309 LSCC WGS blood_normal /diskmnt/Projects/cptac_dow C3N-00309.WGS.T.hg38 C3N-00309 LSCC WGS tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8dcbc14e-ef8c-4970-bad9-7c667a6c3005/433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 92572352153 BAM hg38 8dcbc14e-ef8c-4970-bad9-7c667a6c3005 katmai C3N-00309.WXS.N.hg38 C3N-00309 LSCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/6d2cdd4a-04dc-49ce-ba4a-219ffdbd7eb5/1b3e4f90-8f81-493d-a762-5d91682aa002_gdc_realn.bam 41347036650 BAM hg38 6d2cdd4a-04dc-49ce-ba4a-219ffdbd7eb5 katmai C3N-00309.WXS.T.hg38 C3N-00309 LSCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/05b4b5aa-5c15-42ee-9553-c5eb3e0eb4f0/433a77b0-20ee-4b30-850e-a41642e4f30c_gdc_realn.bam 43105999397 BAM hg38 05b4b5aa-5c15-42ee-9553-c5eb3e0eb4f0 katmai +C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/10ab103c-43cc-44b2-bc99-9edac0570eae/204367470131_R01C01_Grn.idat 13677880 IDAT NA 10ab103c-43cc-44b2-bc99-9edac0570eae katmai +C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2d04d4d1-955a-47b6-9ebb-4cf48b245427/204367400087_R04C01_Grn.idat 13677880 IDAT NA 2d04d4d1-955a-47b6-9ebb-4cf48b245427 katmai +C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d193607b-b8f4-4e12-8bed-3e0cf0dcb134/204372030013_R03C01_Grn.idat 13677895 IDAT NA d193607b-b8f4-4e12-8bed-3e0cf0dcb134 katmai C3N-00310.MethArray.Green.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0fb9866f-3bfa-4c39-a558-a5bf591ff86f/202176290105_R02C01_Grn.idat 13676216 IDAT NA 0fb9866f-3bfa-4c39-a558-a5bf591ff86f katmai +C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2935886d-0650-4874-86e1-f122b616d882/204367470131_R01C01_Red.idat 13677880 IDAT NA 2935886d-0650-4874-86e1-f122b616d882 katmai +C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/753810b8-288c-4f1d-9303-e530b93aaf71/204367400087_R04C01_Red.idat 13677880 IDAT NA 753810b8-288c-4f1d-9303-e530b93aaf71 katmai +C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ce8fe390-d498-45c7-9152-278042f4d6b7/204372030013_R03C01_Red.idat 13677895 IDAT NA ce8fe390-d498-45c7-9152-278042f4d6b7 katmai C3N-00310.MethArray.Red.T C3N-00310 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dbce0208-667c-4dd7-9877-c1be02f0af3e/202176290105_R02C01_Red.idat 13676216 IDAT NA dbce0208-667c-4dd7-9877-c1be02f0af3e katmai C3N-00310.miRNA-Seq.A C3N-00310 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/69613f20-8f09-4980-8725-0bd6dca12361/181108_UNC31-K00269_0163_BH23TVBBXY_CCAACA_S36_L004_R1_001.unaln.bam 164839957 BAM NA 69613f20-8f09-4980-8725-0bd6dca12361 katmai +C3N-00310.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4cb2c585-25af-43a2-9208-8b8ac150529e/200526_UNC32-K00270_0248_BHH7WFBBXY_TACAGC_S16_L001_R1_001.unaln.bam 342062318 BAM NA 4cb2c585-25af-43a2-9208-8b8ac150529e katmai +C3N-00310.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/72910fc8-ead6-4beb-a420-50b5523e381b/200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L003_R1_001.unaln.bam 349103158 BAM NA 72910fc8-ead6-4beb-a420-50b5523e381b katmai +C3N-00310.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f649e262-2a54-4203-b0d1-72374e1756f4/200526_UNC32-K00270_0248_BHH7WFBBXY_TCCCGA_S45_L003_R1_001.unaln.bam 243398978 BAM NA f649e262-2a54-4203-b0d1-72374e1756f4 katmai C3N-00310.miRNA-Seq.T C3N-00310 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/58246253-8553-4073-a559-e166e362ae75/181012_UNC32-K00270_0124_AH223CBBXY_GACGAC_S14_L003_R1_001.unaln.bam 219903758 BAM NA 58246253-8553-4073-a559-e166e362ae75 katmai C3N-00310.RNA-Seq.genomic.A.hg38 C3N-00310 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/4baaa745-11f7-4774-b586-828fedb99cee/be09501c-006a-4d9f-ae4a-f06c9a0abbc0.rna_seq.genomic.gdc_realn.bam 8709570269 BAM hg38 4baaa745-11f7-4774-b586-828fedb99cee katmai C3N-00310.RNA-Seq.genomic.T.hg38 C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/dff02b64-e333-4c1e-980d-f9d48dd6057d/f9b8795b-ca69-4317-b511-fe190703da18.rna_seq.genomic.gdc_realn.bam 8274922415 BAM hg38 dff02b64-e333-4c1e-980d-f9d48dd6057d katmai C3N-00310.RNA-Seq.R1.A C3N-00310 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/1fb79f60-316b-4f6b-a76e-7e5656251b23/171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R1_001.fastq.gz 4000290124 FASTQ NA 1fb79f60-316b-4f6b-a76e-7e5656251b23 katmai +C3N-00310.RNA-Seq.R1.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/89dee074-c120-4cff-8803-2939e845e8d0/200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R1_001.fastq.gz 3466129521 FASTQ NA 89dee074-c120-4cff-8803-2939e845e8d0 katmai +C3N-00310.RNA-Seq.R1.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a77fb3b9-271f-41a8-8427-63ffe6958181/200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R1_001.fastq.gz 4431210554 FASTQ NA a77fb3b9-271f-41a8-8427-63ffe6958181 katmai +C3N-00310.RNA-Seq.R1.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b/200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R1_001.fastq.gz 3094161507 FASTQ NA edbfa46e-fc7f-4c79-8a88-b98aa1c6f90b katmai C3N-00310.RNA-Seq.R1.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/600887e4-6350-43bd-88d8-18fde761b376/170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R1_001.fastq.gz 3879277533 FASTQ NA 600887e4-6350-43bd-88d8-18fde761b376 katmai C3N-00310.RNA-Seq.R2.A C3N-00310 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/947345b1-e728-46f6-90aa-523c8d93319c/171208_UNC32-K00270_0071_BHN7K5BBXX_CTTGTA_S47_L005_R2_001.fastq.gz 4199768745 FASTQ NA 947345b1-e728-46f6-90aa-523c8d93319c katmai +C3N-00310.RNA-Seq.R2.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7d29bd2f-9762-44ce-be42-89e29861f4ed/200608_UNC31-K00269_0281_AHH5NFBBXY_GTATGTTC-AACAGGAA_S3_L001_R2_001.fastq.gz 3750254830 FASTQ NA 7d29bd2f-9762-44ce-be42-89e29861f4ed katmai +C3N-00310.RNA-Seq.R2.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e889774e-64a6-4276-9079-c53c0966c003/200519_UNC31-K00269_0279_AHH5VTBBXY_GCAATGCA-GGAACGTT_S27_L007_R2_001.fastq.gz 3995206015 FASTQ NA e889774e-64a6-4276-9079-c53c0966c003 katmai +C3N-00310.RNA-Seq.R2.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f39809c1-4a34-4c1d-9f70-acf788723916/200519_UNC31-K00269_0279_AHH5VTBBXY_GTTCCAAT-AATTCTGC_S28_L007_R2_001.fastq.gz 5092745384 FASTQ NA f39809c1-4a34-4c1d-9f70-acf788723916 katmai C3N-00310.RNA-Seq.R2.T C3N-00310 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/76ada607-cb88-45df-9f9d-081d65b4fd98/170818_UNC32-K00270_0050_AHL2FHBBXX_ATGTCA_S8_L005_R2_001.fastq.gz 4190573018 FASTQ NA 76ada607-cb88-45df-9f9d-081d65b4fd98 katmai C3N-00310.WXS.N.hg38 C3N-00310 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/3c0d4139-3d67-4100-b190-ac5c97bc946a/46d15fa0-e832-47c8-a5ba-a1caca39b8ad_gdc_realn.bam 34014493164 BAM hg38 3c0d4139-3d67-4100-b190-ac5c97bc946a katmai C3N-00310.WXS.T.hg38 C3N-00310 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/331e5643-c098-412e-9f29-0ed4671fec5a/7f7054b1-e9ef-4275-af89-9926f65014f8_gdc_realn.bam 41036873499 BAM hg38 331e5643-c098-412e-9f29-0ed4671fec5a katmai +C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/52188731-67b0-4405-a0e8-5001576d41bc/204367490090_R01C01_Grn.idat 13677885 IDAT NA 52188731-67b0-4405-a0e8-5001576d41bc katmai +C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dca3c811-fa4e-4e2f-955c-a60a4cabadf1/204367490030_R04C01_Grn.idat 13677885 IDAT NA dca3c811-fa4e-4e2f-955c-a60a4cabadf1 katmai +C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f17b27ca-76a6-4555-a890-fc216df9d8e9/204372030074_R02C01_Grn.idat 13677880 IDAT NA f17b27ca-76a6-4555-a890-fc216df9d8e9 katmai C3N-00312.MethArray.Green.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/03a40d78-0a3b-421a-8fd9-1074982d5f1e/202184990057_R02C01_Grn.idat 13676216 IDAT NA 03a40d78-0a3b-421a-8fd9-1074982d5f1e katmai +C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/543cf62d-362e-4395-a383-c4253971eb2d/204367490090_R01C01_Red.idat 13677885 IDAT NA 543cf62d-362e-4395-a383-c4253971eb2d katmai +C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5e0ead7a-1343-4f2a-b6f5-cfd71886ee68/204372030074_R02C01_Red.idat 13677880 IDAT NA 5e0ead7a-1343-4f2a-b6f5-cfd71886ee68 katmai +C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ced49832-886c-4cef-89f7-61a15f1bd27a/204367490030_R04C01_Red.idat 13677885 IDAT NA ced49832-886c-4cef-89f7-61a15f1bd27a katmai C3N-00312.MethArray.Red.T C3N-00312 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8b10a6b5-4970-4349-8a42-8bed4a4adc10/202184990057_R02C01_Red.idat 13676216 IDAT NA 8b10a6b5-4970-4349-8a42-8bed4a4adc10 katmai +C3N-00312.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/68f4c186-2b34-4e5a-9aa5-eff96f1d2a6a/200526_UNC32-K00270_0248_BHH7WFBBXY_TTAGGC_S47_L003_R1_001.unaln.bam 238687856 BAM NA 68f4c186-2b34-4e5a-9aa5-eff96f1d2a6a katmai +C3N-00312.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bbc3a36a-316c-45b6-8251-476e111cefd3/200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L003_R1_001.unaln.bam 282391239 BAM NA bbc3a36a-316c-45b6-8251-476e111cefd3 katmai +C3N-00312.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f0adc4d0-a1f3-4619-9fac-b9e1b4e77899/200526_UNC32-K00270_0248_BHH7WFBBXY_ATCACG_S39_L003_R1_001.unaln.bam 179291781 BAM NA f0adc4d0-a1f3-4619-9fac-b9e1b4e77899 katmai C3N-00312.miRNA-Seq.T C3N-00312 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d34d878b-0f51-4821-bff7-f3bd9780eeaa/181012_UNC32-K00270_0124_AH223CBBXY_TACAGC_S16_L003_R1_001.unaln.bam 229803384 BAM NA d34d878b-0f51-4821-bff7-f3bd9780eeaa katmai C3N-00312.RNA-Seq.genomic.T.hg38 C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/2566d4a7-8e46-4780-b6d8-53c504aad938/a682f6f5-be82-4fc9-a5da-93674d4d2bf2.rna_seq.genomic.gdc_realn.bam 8849182409 BAM hg38 2566d4a7-8e46-4780-b6d8-53c504aad938 katmai +C3N-00312.RNA-Seq.R1.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/84b165b3-e4c3-40a6-a2b2-be3eb9d6a968/200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R1_001.fastq.gz 4216064401 FASTQ NA 84b165b3-e4c3-40a6-a2b2-be3eb9d6a968 katmai +C3N-00312.RNA-Seq.R1.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d070b7e8-b692-4b38-a0c0-18d789197848/200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R1_001.fastq.gz 4289173913 FASTQ NA d070b7e8-b692-4b38-a0c0-18d789197848 katmai +C3N-00312.RNA-Seq.R1.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/df7a710b-9006-452d-a356-5300dff4bb75/200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R1_001.fastq.gz 4094831538 FASTQ NA df7a710b-9006-452d-a356-5300dff4bb75 katmai C3N-00312.RNA-Seq.R1.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b6017636-1179-4a19-976d-8a4ff24a550d/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R1_001.fastq.gz 4379179377 FASTQ NA b6017636-1179-4a19-976d-8a4ff24a550d katmai +C3N-00312.RNA-Seq.R2.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/03a57298-110d-45a0-b3ab-d86ab4b11fc5/200519_UNC31-K00269_0279_AHH5VTBBXY_ATATCTCG-ATCTTAGT_S30_L008_R2_001.fastq.gz 4835120977 FASTQ NA 03a57298-110d-45a0-b3ab-d86ab4b11fc5 katmai +C3N-00312.RNA-Seq.R2.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/11e4bcb1-1181-41c9-b4c6-3770f2c0e93e/200519_UNC31-K00269_0279_AHH5VTBBXY_ACCTTGGC-GGCCTCAT_S25_L007_R2_001.fastq.gz 5129448695 FASTQ NA 11e4bcb1-1181-41c9-b4c6-3770f2c0e93e katmai +C3N-00312.RNA-Seq.R2.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ef8985af-993b-4c92-8651-d8e0102c4605/200519_UNC31-K00269_0279_AHH5VTBBXY_AACAGGTT-ATACCAAG_S29_L008_R2_001.fastq.gz 4648781248 FASTQ NA ef8985af-993b-4c92-8651-d8e0102c4605 katmai C3N-00312.RNA-Seq.R2.T C3N-00312 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/73499178-bbb1-43cf-969b-120c4503f709/170818_UNC32-K00270_0050_AHL2FHBBXX_GTCCGC_S10_L005_R2_001.fastq.gz 4745246185 FASTQ NA 73499178-bbb1-43cf-969b-120c4503f709 katmai C3N-00312.WXS.N.hg38 C3N-00312 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/aeeaa154-4a21-4e54-b88a-e6e9117aaf99/b502fe65-a50d-45c9-9c87-c57c81394f30_gdc_realn.bam 34531912142 BAM hg38 aeeaa154-4a21-4e54-b88a-e6e9117aaf99 katmai C3N-00312.WXS.T.hg38 C3N-00312 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/ea179973-3472-4360-9eb1-e59eae58ffd3/74487670-deb3-44f1-aaa3-d8a7b82d7290_gdc_realn.bam 26465918875 BAM hg38 ea179973-3472-4360-9eb1-e59eae58ffd3 katmai @@ -6333,15 +6575,28 @@ C3N-00313.RNA-Seq.R1.T C3N-00313 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC C3N-00313.RNA-Seq.R2.T C3N-00313 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/d0634734-0ce4-431a-8003-94d6f61fcc26/170823_UNC31-K00269_0075_AHLCW5BBXX_AGTCAA_S1_L001_R2_001.fastq.gz 3621783704 FASTQ NA d0634734-0ce4-431a-8003-94d6f61fcc26 katmai C3N-00313.WXS.N.hg38 C3N-00313 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/382284ba-b429-42fc-ae04-0e5633278996/630eaa51-5b9c-4f0e-82c7-2494669109ad_gdc_realn.bam 31867438668 BAM hg38 382284ba-b429-42fc-ae04-0e5633278996 katmai C3N-00313.WXS.T.hg38 C3N-00313 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/15118886-6fb8-4af7-b05b-b1005fbee322/cd7a208e-7acf-4a1b-8e35-b4a5c726ab4a_gdc_realn.bam 31517312842 BAM hg38 15118886-6fb8-4af7-b05b-b1005fbee322 katmai +C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/016a3f0a-e25b-46f2-a4ee-e11437fff544/204372030014_R08C01_Grn.idat 13677895 IDAT NA 016a3f0a-e25b-46f2-a4ee-e11437fff544 katmai +C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7bf56131-57e1-481a-8134-d154e9717a3c/204367490048_R03C01_Grn.idat 13677885 IDAT NA 7bf56131-57e1-481a-8134-d154e9717a3c katmai C3N-00314.MethArray.Green.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8525ba4b-702d-40e4-a786-ca992b7e451a/202184990057_R01C01_Grn.idat 13676216 IDAT NA 8525ba4b-702d-40e4-a786-ca992b7e451a katmai +C3N-00314.MethArray.Red.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7a55380e-03d8-4c7f-ba72-d04075453e71/204372030014_R08C01_Red.idat 13677895 IDAT NA 7a55380e-03d8-4c7f-ba72-d04075453e71 katmai +C3N-00314.MethArray.Red.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b3966211-6115-4064-886e-5d7ef6f50456/204367490048_R03C01_Red.idat 13677885 IDAT NA b3966211-6115-4064-886e-5d7ef6f50456 katmai C3N-00314.MethArray.Red.T C3N-00314 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d06d4677-0561-4e19-ba21-a1c173934849/202184990057_R01C01_Red.idat 13676216 IDAT NA d06d4677-0561-4e19-ba21-a1c173934849 katmai C3N-00314.miRNA-Seq.A C3N-00314 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/61f2f83f-8526-4ecb-baaf-a4b37cf26485/181108_UNC31-K00269_0162_AH255GBBXY_CTAGCT_S14_L006_R1_001.unaln.bam 245330773 BAM NA 61f2f83f-8526-4ecb-baaf-a4b37cf26485 katmai +C3N-00314.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0447b26b-9012-463b-b112-7849fb478c36/200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L002_R1_001.unaln.bam 276790761 BAM NA 0447b26b-9012-463b-b112-7849fb478c36 katmai +C3N-00314.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/281233ae-ba2f-49a8-8092-9647f268701e/200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L002_R1_001.unaln.bam 182961498 BAM NA 281233ae-ba2f-49a8-8092-9647f268701e katmai +C3N-00314.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8369d9f5-5d8a-4267-8ead-eec2a46f9589/200526_UNC32-K00270_0248_BHH7WFBBXY_CTTGTA_S41_L005_R1_001.unaln.bam 245374097 BAM NA 8369d9f5-5d8a-4267-8ead-eec2a46f9589 katmai C3N-00314.miRNA-Seq.T C3N-00314 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bf46b333-83d7-4de6-abd2-f21ac7aae3c9/180924_UNC31-K00269_0154_AHWTMLBBXX_CAAAAG_S3_L001_R1_001.unaln.bam 338571909 BAM NA bf46b333-83d7-4de6-abd2-f21ac7aae3c9 katmai C3N-00314.RNA-Seq.genomic.A.hg38 C3N-00314 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/37ab4b66-5171-463b-8c50-4a38c50722fe/0059e842-fdfc-435e-b0a8-a4859392b62e.rna_seq.genomic.gdc_realn.bam 10295770747 BAM hg38 37ab4b66-5171-463b-8c50-4a38c50722fe katmai C3N-00314.RNA-Seq.genomic.T.hg38 C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/f43ec04b-0b26-44f1-a58d-17c18d3eae14/c725eefe-bfa5-4a97-9a9f-ca8afa85ccd6.rna_seq.genomic.gdc_realn.bam 5572202245 BAM hg38 f43ec04b-0b26-44f1-a58d-17c18d3eae14 katmai C3N-00314.RNA-Seq.R1.A C3N-00314 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/29804040-bbf0-4206-9e79-6150a33fb325/180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R1_001.fastq.gz 4282128674 FASTQ NA 29804040-bbf0-4206-9e79-6150a33fb325 katmai +C3N-00314.RNA-Seq.R1.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/56c717c7-89d0-4cd8-a638-13cf9d2bbbf9/200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R1_001.fastq.gz 3676262046 FASTQ NA 56c717c7-89d0-4cd8-a638-13cf9d2bbbf9 katmai +C3N-00314.RNA-Seq.R1.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a046126a-c032-452a-bb72-6d2f0a1c2df3/200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R1_001.fastq.gz 4263636590 FASTQ NA a046126a-c032-452a-bb72-6d2f0a1c2df3 katmai +C3N-00314.RNA-Seq.R1.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a7e3bd23-6487-47ac-a2a2-7d2d12f94240/200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R1_001.fastq.gz 3443358409 FASTQ NA a7e3bd23-6487-47ac-a2a2-7d2d12f94240 katmai C3N-00314.RNA-Seq.R1.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/96b6f505-80d0-448f-820d-06892f3487cb/170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R1_001.fastq.gz 2472197253 FASTQ NA 96b6f505-80d0-448f-820d-06892f3487cb katmai C3N-00314.RNA-Seq.R2.A C3N-00314 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/b49b449f-cc83-4690-9346-a6b4ec327900/180313_UNC32-K00270_0085_BHT2MGBBXX_AGTTCC_S38_L007_R2_001.fastq.gz 4601135914 FASTQ NA b49b449f-cc83-4690-9346-a6b4ec327900 katmai +C3N-00314.RNA-Seq.R2.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4925b454-cfe4-4889-8753-5bbf48c6ad61/200518_UNC32-K00270_0247_AHH573BBXY_CTCTCGTC-TATAACCT_S36_L006_R2_001.fastq.gz 4052867811 FASTQ NA 4925b454-cfe4-4889-8753-5bbf48c6ad61 katmai +C3N-00314.RNA-Seq.R2.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/585db18c-cf35-4df6-a337-bd5b93acd691/200519_UNC31-K00269_0280_BHHKGNBBXY_ATTGTGAA-TGCATTGC_S18_L005_R2_001.fastq.gz 4386649159 FASTQ NA 585db18c-cf35-4df6-a337-bd5b93acd691 katmai +C3N-00314.RNA-Seq.R2.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b3fedb93-436d-4d78-9e32-444b0ae2c98a/200519_UNC31-K00269_0280_BHHKGNBBXY_ACACTAAG-ATCCATAT_S13_L004_R2_001.fastq.gz 4968549870 FASTQ NA b3fedb93-436d-4d78-9e32-444b0ae2c98a katmai C3N-00314.RNA-Seq.R2.T C3N-00314 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/01dbf604-7941-4bd4-9671-8d1ee780ee7a/170912_UNC31-K00269_0081_AHL3YKBBXX_GTCCGC_S20_L005_R2_001.fastq.gz 2736831042 FASTQ NA 01dbf604-7941-4bd4-9671-8d1ee780ee7a katmai C3N-00314.WXS.N.hg38 C3N-00314 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/15cff317-7193-49d0-ba9f-cd4e363c564f/21e53bba-f1a1-42c0-b026-cc40f5bb2b01_gdc_realn.bam 40420145067 BAM hg38 15cff317-7193-49d0-ba9f-cd4e363c564f katmai C3N-00314.WXS.T.hg38 C3N-00314 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/ef10ada7-bbcd-4238-be14-931764592a11/8bfede7e-2578-413c-bea6-447f26b9081d_gdc_realn.bam 31511944675 BAM hg38 ef10ada7-bbcd-4238-be14-931764592a11 katmai @@ -6353,19 +6608,39 @@ C3N-00315.RNA-Seq.R1.T C3N-00315 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC C3N-00315.RNA-Seq.R2.T C3N-00315 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/08d6200f-2755-4eff-b345-7fa1a68d82dc/170830_UNC31-K00269_0078_AHLCVMBBXX_GTGAAA_S17_L005_R2_001.fastq.gz 4819981461 FASTQ NA 08d6200f-2755-4eff-b345-7fa1a68d82dc katmai C3N-00315.WXS.N.hg38 C3N-00315 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/68af6901-66a3-4912-8f6f-6d32e00889aa/b9b589dd-9f9d-4b4d-82cd-048378b3101a_gdc_realn.bam 33497000704 BAM hg38 68af6901-66a3-4912-8f6f-6d32e00889aa katmai C3N-00315.WXS.T.hg38 C3N-00315 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/aa702074-3079-4da7-a98f-c1fedd424dd3/3e8cabbe-d332-47b7-b864-438a8f28f62a_gdc_realn.bam 32566983424 BAM hg38 aa702074-3079-4da7-a98f-c1fedd424dd3 katmai +C3N-00317.MethArray.Green.T C3N-00317 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ea72b685-9d14-4e7a-a516-c23636272d33/204367490084_R03C01_Grn.idat 13677890 IDAT NA ea72b685-9d14-4e7a-a516-c23636272d33 katmai C3N-00317.MethArray.Green.T C3N-00317 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ecde6749-94d6-41bb-a9ec-76697089e5f1/202184990013_R02C01_Grn.idat 13676226 IDAT NA ecde6749-94d6-41bb-a9ec-76697089e5f1 katmai +C3N-00317.MethArray.Red.T C3N-00317 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/32c86870-9493-4cf8-8665-e43f8053bd7f/204367490084_R03C01_Red.idat 13677890 IDAT NA 32c86870-9493-4cf8-8665-e43f8053bd7f katmai C3N-00317.MethArray.Red.T C3N-00317 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/208c0120-9952-41fb-b499-f8fc0c79b2f1/202184990013_R02C01_Red.idat 13676226 IDAT NA 208c0120-9952-41fb-b499-f8fc0c79b2f1 katmai +C3N-00317.miRNA-Seq.T C3N-00317 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ebc93d18-aa19-470b-b44c-c9e001c77f20/200526_UNC32-K00270_0248_BHH7WFBBXY_AGTCAA_S37_L005_R1_001.unaln.bam 315393603 BAM NA ebc93d18-aa19-470b-b44c-c9e001c77f20 katmai C3N-00317.miRNA-Seq.T C3N-00317 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f3f34b0a-61ce-439d-b46b-df17d7673979/181113_UNC31-K00269_0164_AH23NNBBXY_CACCGG_S6_L003_R1_001.unaln.bam 203594470 BAM NA f3f34b0a-61ce-439d-b46b-df17d7673979 katmai C3N-00317.RNA-Seq.genomic.T.hg38 C3N-00317 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/e078b2df-6ada-4a37-b863-458f09d534e6/e6a24f8d-1746-48a1-ac62-744b764f7cd4.rna_seq.genomic.gdc_realn.bam 7517193620 BAM hg38 e078b2df-6ada-4a37-b863-458f09d534e6 katmai +C3N-00317.RNA-Seq.R1.T C3N-00317 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3d8eeeba-2b19-46ac-8047-b76312922225/200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R1_001.fastq.gz 4446715920 FASTQ NA 3d8eeeba-2b19-46ac-8047-b76312922225 katmai C3N-00317.RNA-Seq.R1.T C3N-00317 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/2a4fb96b-e68b-402e-94dd-402cc33de691/170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R1_001.fastq.gz 3673590014 FASTQ NA 2a4fb96b-e68b-402e-94dd-402cc33de691 katmai +C3N-00317.RNA-Seq.R2.T C3N-00317 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bc68e827-b6e2-4c3c-a12a-12110a8661bf/200518_UNC32-K00270_0247_AHH573BBXY_CCAAGTCT-AAGGATGA_S40_L007_R2_001.fastq.gz 5173788304 FASTQ NA bc68e827-b6e2-4c3c-a12a-12110a8661bf katmai C3N-00317.RNA-Seq.R2.T C3N-00317 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/21c429bb-a631-4195-be11-c6b6773ddc2d/170823_UNC31-K00269_0076_BHLCTFBBXX_CGTACG_S6_L007_R2_001.fastq.gz 3990008813 FASTQ NA 21c429bb-a631-4195-be11-c6b6773ddc2d katmai C3N-00317.WXS.N.hg38 C3N-00317 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/6628688a-fa7f-4977-835c-b8eb6007c760/9fb1577a-959f-46aa-be5d-f09257637647_gdc_realn.bam 32022229435 BAM hg38 6628688a-fa7f-4977-835c-b8eb6007c760 katmai C3N-00317.WXS.T.hg38 C3N-00317 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/376a79e0-5220-485d-bedd-5f0e79a3da32/0984ed95-1b7c-4757-9a97-4333c5c229e5_gdc_realn.bam 38506250909 BAM hg38 376a79e0-5220-485d-bedd-5f0e79a3da32 katmai +C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/16825a68-7794-42e2-b1a9-0c8665cbce63/204367490057_R02C01_Grn.idat 13677905 IDAT NA 16825a68-7794-42e2-b1a9-0c8665cbce63 katmai +C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6180d0ff-1a06-4684-83df-4a1fd88d96cc/204372030164_R03C01_Grn.idat 13677880 IDAT NA 6180d0ff-1a06-4684-83df-4a1fd88d96cc katmai +C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ad8ae0db-4798-4334-9196-bc864a27edac/204367400148_R04C01_Grn.idat 13677880 IDAT NA ad8ae0db-4798-4334-9196-bc864a27edac katmai C3N-00320.MethArray.Green.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/036e8043-bc6d-4e69-b131-6a4cb73c3c66/202176290116_R05C01_Grn.idat 13676226 IDAT NA 036e8043-bc6d-4e69-b131-6a4cb73c3c66 katmai +C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/671aee2b-188e-4d75-92f7-e1bf7ecf9dbd/204372030164_R03C01_Red.idat 13677880 IDAT NA 671aee2b-188e-4d75-92f7-e1bf7ecf9dbd katmai +C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a5138284-3fff-40a5-894b-1e2e5a3e6a8f/204367400148_R04C01_Red.idat 13677880 IDAT NA a5138284-3fff-40a5-894b-1e2e5a3e6a8f katmai +C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a522833c-7654-4cb3-8647-49aa4ea9191a/204367490057_R02C01_Red.idat 13677905 IDAT NA a522833c-7654-4cb3-8647-49aa4ea9191a katmai C3N-00320.MethArray.Red.T C3N-00320 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a349dddb-d6fa-4b74-942c-c6129dd68819/202176290116_R05C01_Red.idat 13676226 IDAT NA a349dddb-d6fa-4b74-942c-c6129dd68819 katmai +C3N-00320.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2f18d805-7d6d-42af-8070-e90c8168c479/200526_UNC32-K00270_0248_BHH7WFBBXY_ATGTCA_S22_L002_R1_001.unaln.bam 284601693 BAM NA 2f18d805-7d6d-42af-8070-e90c8168c479 katmai +C3N-00320.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/629eec19-2b96-4d77-a82a-6d11c994777c/200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L002_R1_001.unaln.bam 225705483 BAM NA 629eec19-2b96-4d77-a82a-6d11c994777c katmai +C3N-00320.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7491cd65-34fb-434e-a4ac-b54621b96a81/200526_UNC32-K00270_0248_BHH7WFBBXY_AGTTCC_S38_L003_R1_001.unaln.bam 339476070 BAM NA 7491cd65-34fb-434e-a4ac-b54621b96a81 katmai C3N-00320.miRNA-Seq.T C3N-00320 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c33e1bc4-a082-4ddc-89f2-6984f05783db/181113_UNC31-K00269_0164_AH23NNBBXY_ATGAGC_S2_L003_R1_001.unaln.bam 281152360 BAM NA c33e1bc4-a082-4ddc-89f2-6984f05783db katmai C3N-00320.RNA-Seq.genomic.T.hg38 C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/87aee7eb-4b88-4cd8-9f24-b67e3af8b456/e6e1c683-a838-4b70-9a28-2dd58e44e93c.rna_seq.genomic.gdc_realn.bam 6273469646 BAM hg38 87aee7eb-4b88-4cd8-9f24-b67e3af8b456 katmai +C3N-00320.RNA-Seq.R1.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/66919a0f-2958-4676-b23f-60171879bb9a/200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R1_001.fastq.gz 3679918907 FASTQ NA 66919a0f-2958-4676-b23f-60171879bb9a katmai +C3N-00320.RNA-Seq.R1.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cb1d2aee-af7c-40af-8301-4db2b1421d49/200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R1_001.fastq.gz 3880063080 FASTQ NA cb1d2aee-af7c-40af-8301-4db2b1421d49 katmai +C3N-00320.RNA-Seq.R1.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f69ff481-fb60-4571-ae1e-5532b83b10be/200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R1_001.fastq.gz 4571285022 FASTQ NA f69ff481-fb60-4571-ae1e-5532b83b10be katmai C3N-00320.RNA-Seq.R1.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/37b120ef-3755-4e45-8be1-507d5c35c3e4/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R1_001.fastq.gz 3091322265 FASTQ NA 37b120ef-3755-4e45-8be1-507d5c35c3e4 katmai +C3N-00320.RNA-Seq.R2.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/20ec54c5-b82b-4421-b92b-cb45fda6e36b/200519_UNC31-K00269_0280_BHHKGNBBXY_TTGCCTAG-ACCACTTA_S12_L003_R2_001.fastq.gz 4334583810 FASTQ NA 20ec54c5-b82b-4421-b92b-cb45fda6e36b katmai +C3N-00320.RNA-Seq.R2.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/55661e0f-51e4-4c2d-a719-28620deeb87b/200519_UNC31-K00269_0280_BHHKGNBBXY_CCATTCGA-GTTGTCCG_S9_L003_R2_001.fastq.gz 5356526609 FASTQ NA 55661e0f-51e4-4c2d-a719-28620deeb87b katmai +C3N-00320.RNA-Seq.R2.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6085220d-0b7d-4c0c-b6a5-11ca560676b8/200519_UNC31-K00269_0280_BHHKGNBBXY_TAAGGTCA-TGTCGTAG_S11_L003_R2_001.fastq.gz 4474796601 FASTQ NA 6085220d-0b7d-4c0c-b6a5-11ca560676b8 katmai C3N-00320.RNA-Seq.R2.T C3N-00320 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/94898532-9a80-4e95-872f-0947b84f97ba/170823_UNC31-K00269_0076_BHLCTFBBXX_AGTTCC_S9_L008_R2_001.fastq.gz 3392071071 FASTQ NA 94898532-9a80-4e95-872f-0947b84f97ba katmai C3N-00320.WXS.N.hg38 C3N-00320 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/3b9a2ebc-2dc9-45f5-b4e1-b67572db5204/c757ba45-b388-46bf-8eca-6984ac78b872_gdc_realn.bam 33801293421 BAM hg38 3b9a2ebc-2dc9-45f5-b4e1-b67572db5204 katmai C3N-00320.WXS.T.hg38 C3N-00320 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/cf7fd859-abdd-4959-938b-2651f551b46b/c79489e1-b42b-4426-99c1-a6008778a63c_gdc_realn.bam 34389676597 BAM hg38 cf7fd859-abdd-4959-938b-2651f551b46b katmai @@ -6588,15 +6863,30 @@ C3N-00389.WGS.N.hg38 C3N-00389 UCEC WGS blood_normal /diskmnt/Projects/cptac3_pr C3N-00389.WGS.T.hg38 C3N-00389 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/be158832-b452-457b-8964-8ed06a55400f/5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 95270246574 BAM hg38 be158832-b452-457b-8964-8ed06a55400f katmai C3N-00389.WXS.N.hg38 C3N-00389 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/7f94f3b7-bae8-4766-89d3-eb0361fd142c/7306b3df-21f1-45bd-8905-0d6be9035f4d_gdc_realn.bam 41869982416 BAM hg38 7f94f3b7-bae8-4766-89d3-eb0361fd142c katmai C3N-00389.WXS.T.hg38 C3N-00389 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/a84d1048-c1c0-418a-ac9b-efe0b9dcafbe/5dff9447-7da8-4573-bb38-003f96c1efa7_gdc_realn.bam 34095382686 BAM hg38 a84d1048-c1c0-418a-ac9b-efe0b9dcafbe katmai +C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cdab96de-1419-45e0-a8bb-d67bb58d66f5/204367470124_R08C01_Grn.idat 13677881 IDAT NA cdab96de-1419-45e0-a8bb-d67bb58d66f5 katmai +C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e4dedb6c-e049-4597-ae05-4a11f8fc3929/204372030164_R01C01_Grn.idat 13677880 IDAT NA e4dedb6c-e049-4597-ae05-4a11f8fc3929 katmai +C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fc63d343-b92d-40d1-8193-972b3e694e7c/204367470157_R03C01_Grn.idat 13677880 IDAT NA fc63d343-b92d-40d1-8193-972b3e694e7c katmai C3N-00390.MethArray.Green.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/10d09e53-f69e-41d2-a629-86db69a7f986/202184900128_R01C01_Grn.idat 13676246 IDAT NA 10d09e53-f69e-41d2-a629-86db69a7f986 katmai +C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7449bb66-f628-430b-8b0a-d3e076f18bb6/204367470124_R08C01_Red.idat 13677881 IDAT NA 7449bb66-f628-430b-8b0a-d3e076f18bb6 katmai +C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/aadc0509-821b-4158-98d8-d6cfb2c4943e/204372030164_R01C01_Red.idat 13677880 IDAT NA aadc0509-821b-4158-98d8-d6cfb2c4943e katmai +C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc7fb381-455e-415a-9f7d-714cbf4721d7/204367470157_R03C01_Red.idat 13677880 IDAT NA dc7fb381-455e-415a-9f7d-714cbf4721d7 katmai C3N-00390.MethArray.Red.T C3N-00390 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1f8d4f8f-7e54-4a94-bd17-88002f214ea8/202184900128_R01C01_Red.idat 13676246 IDAT NA 1f8d4f8f-7e54-4a94-bd17-88002f214ea8 katmai C3N-00390.miRNA-Seq.A C3N-00390 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/366a60c1-8102-477d-ac44-2994e06d3458/181108_UNC31-K00269_0163_BH23TVBBXY_TAGCTT_S10_L003_R1_001.unaln.bam 219079074 BAM NA 366a60c1-8102-477d-ac44-2994e06d3458 katmai +C3N-00390.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/35b33871-db9a-4d29-a63b-cc55792e404a/200526_UNC32-K00270_0248_BHH7WFBBXY_GTAGAG_S31_L005_R1_001.unaln.bam 238255594 BAM NA 35b33871-db9a-4d29-a63b-cc55792e404a katmai +C3N-00390.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/86ab0106-c981-433d-a2bd-dc862b97c29d/200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L005_R1_001.unaln.bam 285682717 BAM NA 86ab0106-c981-433d-a2bd-dc862b97c29d katmai +C3N-00390.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fc1548a0-41df-455b-be9c-53e1afa7d63f/200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L005_R1_001.unaln.bam 466208123 BAM NA fc1548a0-41df-455b-be9c-53e1afa7d63f katmai C3N-00390.miRNA-Seq.T C3N-00390 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/428f0573-8e30-4ecf-a9b6-7b6a20c6d784/180924_UNC31-K00269_0154_AHWTMLBBXX_CGATGT_S42_L002_R1_001.unaln.bam 318162379 BAM NA 428f0573-8e30-4ecf-a9b6-7b6a20c6d784 katmai C3N-00390.RNA-Seq.genomic.A.hg38 C3N-00390 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/f6c253af-bf92-49df-8363-5c1b9673f0ce/84ad69de-2863-4a68-ad0d-da85a5e1db4c.rna_seq.genomic.gdc_realn.bam 7631271535 BAM hg38 f6c253af-bf92-49df-8363-5c1b9673f0ce katmai C3N-00390.RNA-Seq.genomic.T.hg38 C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/03045747-1050-4737-8130-bdea421d1590/75747611-997b-438a-8bd3-6b857ab94712.rna_seq.genomic.gdc_realn.bam 10406451606 BAM hg38 03045747-1050-4737-8130-bdea421d1590 katmai C3N-00390.RNA-Seq.R1.A C3N-00390 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/e043fb64-5301-4a3b-a854-35c982a50471/171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R1_001.fastq.gz 3719497909 FASTQ NA e043fb64-5301-4a3b-a854-35c982a50471 katmai +C3N-00390.RNA-Seq.R1.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2002689b-cc74-438b-9bbf-cca9f937445e/200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R1_001.fastq.gz 4056712338 FASTQ NA 2002689b-cc74-438b-9bbf-cca9f937445e katmai +C3N-00390.RNA-Seq.R1.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6cfbe052-98a8-44be-b136-fd587b9881f2/200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R1_001.fastq.gz 3657936333 FASTQ NA 6cfbe052-98a8-44be-b136-fd587b9881f2 katmai +C3N-00390.RNA-Seq.R1.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/905058aa-6424-47a3-b1cf-3f06442145b7/200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R1_001.fastq.gz 4020863735 FASTQ NA 905058aa-6424-47a3-b1cf-3f06442145b7 katmai C3N-00390.RNA-Seq.R1.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/cfd17a8e-5a92-4ef4-9071-8c31a235e709/171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R1_001.fastq.gz 5501332065 FASTQ NA cfd17a8e-5a92-4ef4-9071-8c31a235e709 katmai C3N-00390.RNA-Seq.R2.A C3N-00390 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/b450c8e8-7898-4555-b7f5-3b3921d17b22/171212_UNC31-K00269_0102_AHN5MMBBXX_TAGCTT_S20_L005_R2_001.fastq.gz 4091132493 FASTQ NA b450c8e8-7898-4555-b7f5-3b3921d17b22 katmai +C3N-00390.RNA-Seq.R2.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/88c52f10-b800-41ff-bfcc-692c23a2be2e/200518_UNC32-K00270_0247_AHH573BBXY_TAATACAG-ATATTCAC_S46_L008_R2_001.fastq.gz 4819783727 FASTQ NA 88c52f10-b800-41ff-bfcc-692c23a2be2e katmai +C3N-00390.RNA-Seq.R2.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9184058d-e03e-46e2-88f1-3d5d51929248/200518_UNC32-K00270_0247_AHH573BBXY_ATGTAAGT-ACTCTATG_S43_L008_R2_001.fastq.gz 4275608311 FASTQ NA 9184058d-e03e-46e2-88f1-3d5d51929248 katmai +C3N-00390.RNA-Seq.R2.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/eff14575-0fda-4b6f-8048-c27b0ff25568/200518_UNC32-K00270_0247_AHH573BBXY_CGGCGTGA-GCGCCTGT_S44_L008_R2_001.fastq.gz 4987980812 FASTQ NA eff14575-0fda-4b6f-8048-c27b0ff25568 katmai C3N-00390.RNA-Seq.R2.T C3N-00390 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/aac89418-1bdf-4820-b7ad-47d287e141be/171011_UNC31-K00269_0086_AHLJLCBBXX_ATGTCA_S1_L001_R2_001.fastq.gz 5718157935 FASTQ NA aac89418-1bdf-4820-b7ad-47d287e141be katmai C3N-00390.WXS.N.hg38 C3N-00390 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/8e18e440-e6bb-4977-89d5-a9dbc941a364/faa668ee-186c-4f91-9d95-174aa0475acc_gdc_realn.bam 38648200944 BAM hg38 8e18e440-e6bb-4977-89d5-a9dbc941a364 katmai C3N-00390.WXS.T.hg38 C3N-00390 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/8fb76fd8-4ac2-445a-bf61-627855d3a69c/123b51a7-1551-4ff7-99d0-6feb628c4355_gdc_realn.bam 33875116875 BAM hg38 8fb76fd8-4ac2-445a-bf61-627855d3a69c katmai @@ -6663,11 +6953,20 @@ C3N-00436.WGS.N.hg38 C3N-00436 PDA WGS blood_normal /diskmnt/Projects/cptac_down C3N-00436.WGS.T.hg38 C3N-00436 PDA WGS tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4f3ec54d-5f40-4c05-b239-9ddd5036994b/aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 100417846565 BAM hg38 4f3ec54d-5f40-4c05-b239-9ddd5036994b katmai C3N-00436.WXS.N.hg38 C3N-00436 PDA WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/6eae6ce6-d996-4309-b349-73effa28b1b3/6e6a1556-a864-4c8a-8b63-118a87828c67_gdc_realn.bam 51158353494 BAM hg38 6eae6ce6-d996-4309-b349-73effa28b1b3 katmai C3N-00436.WXS.T.hg38 C3N-00436 PDA WXS tumor /diskmnt/Projects/cptac/GDC_import/data/3b06c6f2-da38-4070-a976-3846e692faf4/aa453f8a-222e-4ede-a0d6-f957897564a2_gdc_realn.bam 45758552239 BAM hg38 3b06c6f2-da38-4070-a976-3846e692faf4 katmai +C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0d0c6f62-d319-4b8c-8008-4db5e7bdc13b/204367490029_R02C01_Grn.idat 13677885 IDAT NA 0d0c6f62-d319-4b8c-8008-4db5e7bdc13b katmai +C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0de530fe-e661-4e4f-95b1-6016d13be49d/204367490056_R04C01_Grn.idat 13677895 IDAT NA 0de530fe-e661-4e4f-95b1-6016d13be49d katmai C3N-00437.MethArray.Green.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f5a97070-fb0b-40a8-a0de-39e8a3c8d34f/202184900110_R01C01_Grn.idat 13676256 IDAT NA f5a97070-fb0b-40a8-a0de-39e8a3c8d34f katmai +C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ac6af806-1947-4ab8-b2d3-76851222287e/204367490029_R02C01_Red.idat 13677885 IDAT NA ac6af806-1947-4ab8-b2d3-76851222287e katmai +C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c470c285-526e-423f-8573-80d2c0ffe144/204367490056_R04C01_Red.idat 13677895 IDAT NA c470c285-526e-423f-8573-80d2c0ffe144 katmai C3N-00437.MethArray.Red.T C3N-00437 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8e99e4f6-80ba-4e80-8fb9-c818b7d68ff4/202184900110_R01C01_Red.idat 13676256 IDAT NA 8e99e4f6-80ba-4e80-8fb9-c818b7d68ff4 katmai +C3N-00437.miRNA-Seq.T C3N-00437 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4e17be1f-f47c-4e35-8205-bd4eb0f1f9f3/200526_UNC32-K00270_0248_BHH7WFBBXY_GTCCGC_S14_L002_R1_001.unaln.bam 235656830 BAM NA 4e17be1f-f47c-4e35-8205-bd4eb0f1f9f3 katmai C3N-00437.miRNA-Seq.T C3N-00437 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f4fb1bc7-28df-4e3a-bfe3-f995d38aaf24/180924_UNC31-K00269_0154_AHWTMLBBXX_CACCGG_S41_L002_R1_001.unaln.bam 270101613 BAM NA f4fb1bc7-28df-4e3a-bfe3-f995d38aaf24 katmai C3N-00437.RNA-Seq.genomic.T.hg38 C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/8d4fddd2-a533-4dc0-9ece-2ecd63c1a682/46c7d5aa-aa99-4f82-904d-6a62ca0d1687.rna_seq.genomic.gdc_realn.bam 9668395474 BAM hg38 8d4fddd2-a533-4dc0-9ece-2ecd63c1a682 katmai +C3N-00437.RNA-Seq.R1.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/234117c5-dbee-4918-b6c1-59c141a0f5d9/200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R1_001.fastq.gz 3625423624 FASTQ NA 234117c5-dbee-4918-b6c1-59c141a0f5d9 katmai +C3N-00437.RNA-Seq.R1.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9ece06e8-9b6d-449b-b2a5-28cf31463fa6/200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R1_001.fastq.gz 3754763821 FASTQ NA 9ece06e8-9b6d-449b-b2a5-28cf31463fa6 katmai C3N-00437.RNA-Seq.R1.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/b7908b71-b7fa-45ce-bde6-a99a873c5759/170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R1_001.fastq.gz 4652417529 FASTQ NA b7908b71-b7fa-45ce-bde6-a99a873c5759 katmai +C3N-00437.RNA-Seq.R2.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/144761fd-fe29-4261-98e1-8df138e611cd/200519_UNC31-K00269_0280_BHHKGNBBXY_GTGTCGGA-GCTTGCGC_S15_L004_R2_001.fastq.gz 4304549373 FASTQ NA 144761fd-fe29-4261-98e1-8df138e611cd katmai +C3N-00437.RNA-Seq.R2.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/221c7dfb-25d0-4adb-91bb-6e3c82fb6016/200518_UNC32-K00270_0247_AHH573BBXY_TTATAACC-GATATCGA_S31_L004_R2_001.fastq.gz 4032261994 FASTQ NA 221c7dfb-25d0-4adb-91bb-6e3c82fb6016 katmai C3N-00437.RNA-Seq.R2.T C3N-00437 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41/170830_UNC31-K00269_0078_AHLCVMBBXX_GTGGCC_S13_L005_R2_001.fastq.gz 4976163068 FASTQ NA 21aa8b4d-b7a4-4d24-8edf-b9fc75b24f41 katmai C3N-00437.WXS.N.hg38 C3N-00437 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/b67db00d-1f85-4283-9a26-b629f2cc3726/8f1d580e-0c91-4789-bdff-2e27ae821366_gdc_realn.bam 32989308648 BAM hg38 b67db00d-1f85-4283-9a26-b629f2cc3726 katmai C3N-00437.WXS.T.hg38 C3N-00437 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/96724a7e-9a99-4ad2-b1da-1d2d28200609/f17d580b-fab7-45ed-90cf-2ad70cf8cd3f_gdc_realn.bam 40762163012 BAM hg38 96724a7e-9a99-4ad2-b1da-1d2d28200609 katmai @@ -6698,15 +6997,25 @@ C3N-00492.RNA-Seq.R1.T C3N-00492 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC C3N-00492.RNA-Seq.R2.T C3N-00492 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013/170905_UNC31-K00269_0079_AHLCF7BBXX_ACTGAT_S10_L003_R2_001.fastq.gz 4547476920 FASTQ NA 5ac1e5d2-0e4e-4e8e-9d94-fe318ed2a013 katmai C3N-00492.WXS.N.hg38 C3N-00492 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/9cf80f38-78a2-4635-a5bb-47785d7d5d08/95f87da0-10c3-4119-ac35-19997d6e4bc8_gdc_realn.bam 42289863592 BAM hg38 9cf80f38-78a2-4635-a5bb-47785d7d5d08 katmai C3N-00492.WXS.T.hg38 C3N-00492 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/addcc625-919f-4b3b-927f-9fc0366a48f7/3c066ad7-5abe-4f2f-a975-8bc9f84e6e62_gdc_realn.bam 39921976347 BAM hg38 addcc625-919f-4b3b-927f-9fc0366a48f7 katmai +C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1b16f23e-06d2-4606-b7d8-2ddef7a80d55/204367490048_R04C01_Grn.idat 13677885 IDAT NA 1b16f23e-06d2-4606-b7d8-2ddef7a80d55 katmai +C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7307db34-81e3-4ccd-a0d3-27b8cc58f3e5/204372030106_R01C01_Grn.idat 13677885 IDAT NA 7307db34-81e3-4ccd-a0d3-27b8cc58f3e5 katmai C3N-00494.MethArray.Green.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/308bc5ea-6415-4670-a10c-3a68ddac1ab9/202178770045_R02C01_Grn.idat 13676241 IDAT NA 308bc5ea-6415-4670-a10c-3a68ddac1ab9 katmai +C3N-00494.MethArray.Red.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0c166bf5-e29c-407d-bfcd-c7b8c39ac0bc/204372030106_R01C01_Red.idat 13677885 IDAT NA 0c166bf5-e29c-407d-bfcd-c7b8c39ac0bc katmai +C3N-00494.MethArray.Red.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3ebf84e4-729c-44de-88bb-94ec9d1202d3/204367490048_R04C01_Red.idat 13677885 IDAT NA 3ebf84e4-729c-44de-88bb-94ec9d1202d3 katmai C3N-00494.MethArray.Red.T C3N-00494 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3156833e-f69c-4e2f-b763-32aac3911075/202178770045_R02C01_Red.idat 13676241 IDAT NA 3156833e-f69c-4e2f-b763-32aac3911075 katmai C3N-00494.miRNA-Seq.A C3N-00494 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b6519109-bd4e-4b8e-9505-4cbd8322dfb4/181108_UNC31-K00269_0162_AH255GBBXY_CTATAC_S15_L006_R1_001.unaln.bam 236623166 BAM NA b6519109-bd4e-4b8e-9505-4cbd8322dfb4 katmai +C3N-00494.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/71ff2f17-12b4-4f53-9252-11f846acc22e/200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L002_R1_001.unaln.bam 171116157 BAM NA 71ff2f17-12b4-4f53-9252-11f846acc22e katmai +C3N-00494.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c0ccf61f-58af-4e0a-b1bf-cadfd690c248/200526_UNC32-K00270_0248_BHH7WFBBXY_GTGAAA_S32_L002_R1_001.unaln.bam 250835777 BAM NA c0ccf61f-58af-4e0a-b1bf-cadfd690c248 katmai C3N-00494.miRNA-Seq.T C3N-00494 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/64dc1096-8283-4834-a357-6af676f6f3f6/181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L005_R1_001.unaln.bam 236256164 BAM NA 64dc1096-8283-4834-a357-6af676f6f3f6 katmai C3N-00494.RNA-Seq.genomic.A.hg38 C3N-00494 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/c378c6fe-e73f-42c7-8f63-7a355782ab78/f97a8222-a223-4104-b035-3aeca1d55e3a.rna_seq.genomic.gdc_realn.bam 8260207804 BAM hg38 c378c6fe-e73f-42c7-8f63-7a355782ab78 katmai C3N-00494.RNA-Seq.genomic.T.hg38 C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/5a5dd692-0ce5-4898-9205-99d8840c9c08/bc2eb69a-92c8-4227-9ea3-d8bbcea509fe.rna_seq.genomic.gdc_realn.bam 7016895481 BAM hg38 5a5dd692-0ce5-4898-9205-99d8840c9c08 katmai C3N-00494.RNA-Seq.R1.A C3N-00494 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/4206da2c-7976-4fe3-b4c0-84fd2c9e3b69/180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R1_001.fastq.gz 3429082012 FASTQ NA 4206da2c-7976-4fe3-b4c0-84fd2c9e3b69 katmai +C3N-00494.RNA-Seq.R1.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1bdb8c8b-dac9-44d8-9e24-c03902cb6052/200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R1_001.fastq.gz 4468034938 FASTQ NA 1bdb8c8b-dac9-44d8-9e24-c03902cb6052 katmai +C3N-00494.RNA-Seq.R1.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d7c57fa6-a2da-435f-9c9e-090ea4ece298/200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R1_001.fastq.gz 3125681078 FASTQ NA d7c57fa6-a2da-435f-9c9e-090ea4ece298 katmai C3N-00494.RNA-Seq.R1.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/6f33effb-eaec-4176-a032-7e7c017b66b6/170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R1_001.fastq.gz 3444661736 FASTQ NA 6f33effb-eaec-4176-a032-7e7c017b66b6 katmai C3N-00494.RNA-Seq.R2.A C3N-00494 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/eee3dfdf-79e9-48ce-aaca-f047ef10c13b/180313_UNC32-K00270_0085_BHT2MGBBXX_ATGTCA_S43_L008_R2_001.fastq.gz 3743408251 FASTQ NA eee3dfdf-79e9-48ce-aaca-f047ef10c13b katmai +C3N-00494.RNA-Seq.R2.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5ac4146a-1572-4b59-8388-c503f6beb946/200519_UNC31-K00269_0280_BHHKGNBBXY_TTCCTGTT-AGTATCTT_S16_L004_R2_001.fastq.gz 5042833136 FASTQ NA 5ac4146a-1572-4b59-8388-c503f6beb946 katmai +C3N-00494.RNA-Seq.R2.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a51962b2-2228-4455-bcf6-57d6d4479067/200519_UNC31-K00269_0280_BHHKGNBBXY_CCTTCACC-GACGCTCC_S14_L004_R2_001.fastq.gz 3613516467 FASTQ NA a51962b2-2228-4455-bcf6-57d6d4479067 katmai C3N-00494.RNA-Seq.R2.T C3N-00494 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9571a8f2-e58e-437d-930c-2c5c9073576e/170823_UNC31-K00269_0075_AHLCW5BBXX_GTGAAA_S18_L005_R2_001.fastq.gz 3573204620 FASTQ NA 9571a8f2-e58e-437d-930c-2c5c9073576e katmai C3N-00494.WXS.N.hg38 C3N-00494 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/b619cdc5-a036-42f3-8e92-276a81a52866/77c492cd-10e7-45f0-a55d-68b7ca8101ff_gdc_realn.bam 31153675734 BAM hg38 b619cdc5-a036-42f3-8e92-276a81a52866 katmai C3N-00494.WXS.T.hg38 C3N-00494 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/d13873ad-167d-40e3-b2e4-5a829a1810fc/6f1a51d2-1199-4988-bb66-719b652cd7df_gdc_realn.bam 36953774725 BAM hg38 d13873ad-167d-40e3-b2e4-5a829a1810fc katmai @@ -7027,16 +7336,31 @@ C3N-00572.RNA-Seq.R2.A C3N-00572 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00572.RNA-Seq.R2.T C3N-00572 LUAD RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/57f41a92-2a2b-4673-b1d5-3f2a298dd09f/170823_UNC31-K00269_0075_AHLCW5BBXX_GGCTAC_S3_L001_R2_001.fastq.gz 4279080356 FASTQ NA 57f41a92-2a2b-4673-b1d5-3f2a298dd09f katmai C3N-00572.WXS.N.hg38 C3N-00572 LUAD WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/c3f65c9a-98de-42e6-a84a-c14713f503a3/64935647-17f9-43a7-9874-6b6c3ea6e74f_gdc_realn.bam 60474177791 BAM hg38 c3f65c9a-98de-42e6-a84a-c14713f503a3 katmai C3N-00572.WXS.T.hg38 C3N-00572 LUAD WXS tumor /diskmnt/Projects/cptac/GDC_import/data/47edcd39-594b-4d96-b6c1-4e7332969669/16e085ef-aa13-4d9e-ad84-45d2fae7e8d6_gdc_realn.bam 45222865899 BAM hg38 47edcd39-594b-4d96-b6c1-4e7332969669 katmai +C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/13009711-db7e-46d9-a510-41fdad6b335c/204372030090_R01C01_Grn.idat 13677880 IDAT NA 13009711-db7e-46d9-a510-41fdad6b335c katmai +C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/376be524-153c-4c0b-bdc3-a0acc33918b6/204367490061_R03C01_Grn.idat 13677885 IDAT NA 376be524-153c-4c0b-bdc3-a0acc33918b6 katmai +C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7afc4f3b-2f09-427b-808c-66d179518130/204372030106_R03C01_Grn.idat 13677885 IDAT NA 7afc4f3b-2f09-427b-808c-66d179518130 katmai C3N-00573.MethArray.Green.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/12d3422a-d8c6-43f2-a85f-01114b6d2f07/202184990059_R06C01_Grn.idat 13676231 IDAT NA 12d3422a-d8c6-43f2-a85f-01114b6d2f07 katmai +C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2d65e679-49f8-4a55-97ac-338a4b1a0abd/204372030106_R03C01_Red.idat 13677885 IDAT NA 2d65e679-49f8-4a55-97ac-338a4b1a0abd katmai +C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c6009b48-a095-4bb9-a8eb-81611d337c48/204372030090_R01C01_Red.idat 13677880 IDAT NA c6009b48-a095-4bb9-a8eb-81611d337c48 katmai +C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d16988d3-1431-433e-bd93-b7119ed08b38/204367490061_R03C01_Red.idat 13677885 IDAT NA d16988d3-1431-433e-bd93-b7119ed08b38 katmai C3N-00573.MethArray.Red.T C3N-00573 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c20402c5-34ec-4590-8ac6-48d0b8aab23a/202184990059_R06C01_Red.idat 13676231 IDAT NA c20402c5-34ec-4590-8ac6-48d0b8aab23a katmai C3N-00573.miRNA-Seq.A C3N-00573 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7072c7c4-a59c-40b9-9d36-ca974db4a6ef/181108_UNC31-K00269_0163_BH23TVBBXY_AGTCAA_S13_L003_R1_001.unaln.bam 219449464 BAM NA 7072c7c4-a59c-40b9-9d36-ca974db4a6ef katmai +C3N-00573.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/626dbb1b-5aaf-46c9-91c8-a87e4bf850f8/200526_UNC32-K00270_0248_BHH7WFBBXY_CATGGC_S27_L002_R1_001.unaln.bam 206638144 BAM NA 626dbb1b-5aaf-46c9-91c8-a87e4bf850f8 katmai +C3N-00573.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/683e0931-e467-4337-8977-a6a3c335e1a1/200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L001_R1_001.unaln.bam 378059132 BAM NA 683e0931-e467-4337-8977-a6a3c335e1a1 katmai +C3N-00573.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ba781018-ba9c-4c64-85fa-a8ef4dba9200/200526_UNC32-K00270_0248_BHH7WFBBXY_CAGATC_S40_L005_R1_001.unaln.bam 218993804 BAM NA ba781018-ba9c-4c64-85fa-a8ef4dba9200 katmai C3N-00573.miRNA-Seq.T C3N-00573 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/22f2b8bf-1dac-467c-93f0-58539d6e0401/181108_UNC31-K00269_0163_BH23TVBBXY_CGTACG_S22_L001_R1_001.unaln.bam 222929934 BAM NA 22f2b8bf-1dac-467c-93f0-58539d6e0401 katmai C3N-00573.RNA-Seq.genomic.A.hg38 C3N-00573 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/e79dffd4-8c6a-4c31-9c3c-b9e7167838aa/6a905aa3-37a9-4fea-9c71-609bdaf340e6.rna_seq.genomic.gdc_realn.bam 7464375989 BAM hg38 e79dffd4-8c6a-4c31-9c3c-b9e7167838aa katmai C3N-00573.RNA-Seq.genomic.T.hg38 C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/b4809acb-46f8-4382-a5fb-4643d9954af8/a630dfbf-269a-44f4-a982-d0fe5542c63f.rna_seq.genomic.gdc_realn.bam 7925563504 BAM hg38 b4809acb-46f8-4382-a5fb-4643d9954af8 katmai C3N-00573.RNA-Seq.R1.A C3N-00573 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1/171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R1_001.fastq.gz 3774504274 FASTQ NA 2e2880df-0c02-43ff-a8fc-7f8ca3b8cfa1 katmai C3N-00573.RNA-Seq.R1.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/e63a8f80-3340-4961-8b91-7d6567b3d9ba/170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R1_001.fastq.gz 3753340556 FASTQ NA e63a8f80-3340-4961-8b91-7d6567b3d9ba katmai +C3N-00573.RNA-Seq.R1.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ae9995f9-517f-4e35-9d16-22e57745920e/200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R1_001.fastq.gz 4369383350 FASTQ NA ae9995f9-517f-4e35-9d16-22e57745920e katmai +C3N-00573.RNA-Seq.R1.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b956ad15-1015-4bcb-8826-06e134175ba8/200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R1_001.fastq.gz 3596352020 FASTQ NA b956ad15-1015-4bcb-8826-06e134175ba8 katmai +C3N-00573.RNA-Seq.R1.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f168df71-22e8-4e93-b119-db33288bca15/200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R1_001.fastq.gz 3516400254 FASTQ NA f168df71-22e8-4e93-b119-db33288bca15 katmai C3N-00573.RNA-Seq.R2.A C3N-00573 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/17350738-3fbb-4894-bed3-5fe7a8d0d6ae/171212_UNC31-K00269_0102_AHN5MMBBXX_AGTCAA_S13_L004_R2_001.fastq.gz 4013776353 FASTQ NA 17350738-3fbb-4894-bed3-5fe7a8d0d6ae katmai C3N-00573.RNA-Seq.R2.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/6da0f2bc-0521-42e0-8b7c-364457d2288b/170828_UNC31-K00269_0077_AHLF33BBXX_ACAGTG_S9_L003_R2_001.fastq.gz 4057789628 FASTQ NA 6da0f2bc-0521-42e0-8b7c-364457d2288b katmai +C3N-00573.RNA-Seq.R2.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/44682b18-e494-476f-b1fa-4e047c4abb0a/200518_UNC32-K00270_0247_AHH573BBXY_CAAGCTAG-ACATAGCG_S33_L005_R2_001.fastq.gz 4295270762 FASTQ NA 44682b18-e494-476f-b1fa-4e047c4abb0a katmai +C3N-00573.RNA-Seq.R2.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/acaeeb63-695e-4f7d-81a7-8bd834514232/200519_UNC31-K00269_0280_BHHKGNBBXY_CTGCTTCC-GATAGATC_S26_L007_R2_001.fastq.gz 4046510456 FASTQ NA acaeeb63-695e-4f7d-81a7-8bd834514232 katmai +C3N-00573.RNA-Seq.R2.T C3N-00573 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b5afe562-acc3-4969-938e-993a2c39e70f/200519_UNC31-K00269_0280_BHHKGNBBXY_GGTCACGA-GTATTATG_S27_L007_R2_001.fastq.gz 5154277956 FASTQ NA b5afe562-acc3-4969-938e-993a2c39e70f katmai C3N-00573.WXS.N.hg38 C3N-00573 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/61d8df3e-f0bc-4831-aada-a79f9afb58f3/366e021b-ebe0-4ef7-8a77-80f237dc316d_gdc_realn.bam 39789493860 BAM hg38 61d8df3e-f0bc-4831-aada-a79f9afb58f3 katmai C3N-00573.WXS.T.hg38 C3N-00573 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc/631f5939-bd6d-4a1e-8476-e2fee9ebe6c4_gdc_realn.bam 34690882500 BAM hg38 fa3d2f42-f366-4dc6-a4a0-e49cddfc61dc katmai C3N-00574.MethArray.Green.A C3N-00574 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/5f8770ac-d592-47e8-976b-b5da2d00384e/203028200023_R05C01_Grn.idat 13676241 IDAT NA 5f8770ac-d592-47e8-976b-b5da2d00384e katmai @@ -7051,16 +7375,31 @@ C3N-00574.RNA-Seq.R1.A C3N-00574 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cp C3N-00574.RNA-Seq.R1.T C3N-00574 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/015afacd-88f7-4ba6-816e-6a052ce93628/171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R1_001.fastq.gz 4676322581 FASTQ NA 015afacd-88f7-4ba6-816e-6a052ce93628 katmai C3N-00574.RNA-Seq.R2.A C3N-00574 LUAD RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/af414703-79f3-4d68-be79-9e0f77d0baee/171205_UNC32-K00270_0069_BHN2HGBBXX_ACAGTG_S16_L004_R2_001.fastq.gz 4682498670 FASTQ NA af414703-79f3-4d68-be79-9e0f77d0baee katmai C3N-00574.RNA-Seq.R2.T C3N-00574 LUAD RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/1f745827-9869-45f6-a84f-6f160ecef687/171129_UNC32-K00270_0066_AHM25VBBXX_CGATGT_S6_L007_R2_001.fastq.gz 5050755625 FASTQ NA 1f745827-9869-45f6-a84f-6f160ecef687 katmai +C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/35449faa-21ec-4fc9-8f4b-d8f305d0968f/204367490082_R03C01_Grn.idat 13677900 IDAT NA 35449faa-21ec-4fc9-8f4b-d8f305d0968f katmai +C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bc2523fd-a0c7-46f3-b131-a3df00ab7d51/204372030023_R03C01_Grn.idat 13677895 IDAT NA bc2523fd-a0c7-46f3-b131-a3df00ab7d51 katmai +C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d96c3105-11d6-472d-8187-a9e1417094fa/204367490151_R03C01_Grn.idat 13677895 IDAT NA d96c3105-11d6-472d-8187-a9e1417094fa katmai C3N-00577.MethArray.Green.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b71c6660-9862-442d-986d-c925a53b9d4c/202178770079_R06C01_Grn.idat 13676241 IDAT NA b71c6660-9862-442d-986d-c925a53b9d4c katmai +C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4f678198-3268-4a6d-9d02-7b19150e9add/204372030023_R03C01_Red.idat 13677895 IDAT NA 4f678198-3268-4a6d-9d02-7b19150e9add katmai +C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8f7e3ae4-401f-4a2f-934a-f6baa6e749e3/204367490082_R03C01_Red.idat 13677900 IDAT NA 8f7e3ae4-401f-4a2f-934a-f6baa6e749e3 katmai +C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/eab6b3ad-de2e-44b3-baae-db2b0a14731a/204367490151_R03C01_Red.idat 13677895 IDAT NA eab6b3ad-de2e-44b3-baae-db2b0a14731a katmai C3N-00577.MethArray.Red.T C3N-00577 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fbd88f51-a5c4-499b-96be-fa6483856319/202178770079_R06C01_Red.idat 13676241 IDAT NA fbd88f51-a5c4-499b-96be-fa6483856319 katmai C3N-00577.miRNA-Seq.A C3N-00577 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b74697f3-a0cf-4bf1-9b54-7578b7da7f3c/181108_UNC31-K00269_0163_BH23TVBBXY_AGTTCC_S14_L003_R1_001.unaln.bam 207695420 BAM NA b74697f3-a0cf-4bf1-9b54-7578b7da7f3c katmai +C3N-00577.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/53edc5cd-f442-40d0-8dc2-86caa01f9d74/200526_UNC32-K00270_0248_BHH7WFBBXY_ACTTGA_S36_L005_R1_001.unaln.bam 184070990 BAM NA 53edc5cd-f442-40d0-8dc2-86caa01f9d74 katmai +C3N-00577.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/be26a65b-799d-43a6-8a1c-fae252ce3d58/200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L001_R1_001.unaln.bam 181702767 BAM NA be26a65b-799d-43a6-8a1c-fae252ce3d58 katmai +C3N-00577.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c2192a85-cc2e-4789-8db7-f2094812973d/200526_UNC32-K00270_0248_BHH7WFBBXY_CGGAAT_S8_L001_R1_001.unaln.bam 463156172 BAM NA c2192a85-cc2e-4789-8db7-f2094812973d katmai C3N-00577.miRNA-Seq.T C3N-00577 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ce2a5270-a547-4294-9425-dc4a270209b5/181108_UNC31-K00269_0163_BH23TVBBXY_GAGTGG_S23_L001_R1_001.unaln.bam 200713625 BAM NA ce2a5270-a547-4294-9425-dc4a270209b5 katmai C3N-00577.RNA-Seq.genomic.A.hg38 C3N-00577 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/b17b805b-3466-49eb-ad3b-fe158f758e7c/b46cc1dc-8091-4743-9322-3c678503854c.rna_seq.genomic.gdc_realn.bam 8682858584 BAM hg38 b17b805b-3466-49eb-ad3b-fe158f758e7c katmai C3N-00577.RNA-Seq.genomic.T.hg38 C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/c1d37b4a-0cc5-465d-a282-5afca92b3c4a/bc306cc5-2acb-4dc7-a9ec-2023986b5270.rna_seq.genomic.gdc_realn.bam 9323765451 BAM hg38 c1d37b4a-0cc5-465d-a282-5afca92b3c4a katmai C3N-00577.RNA-Seq.R1.A C3N-00577 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938/171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R1_001.fastq.gz 4329378837 FASTQ NA 4d3c59d0-b5c0-4299-ac8f-8b51ca8b4938 katmai C3N-00577.RNA-Seq.R1.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a979d5b0-ffce-4214-b01a-05afd602eb21/170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R1_001.fastq.gz 4640183044 FASTQ NA a979d5b0-ffce-4214-b01a-05afd602eb21 katmai +C3N-00577.RNA-Seq.R1.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/597afa5b-9346-4018-9b9e-72dd9003259f/200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R1_001.fastq.gz 5367247074 FASTQ NA 597afa5b-9346-4018-9b9e-72dd9003259f katmai +C3N-00577.RNA-Seq.R1.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/60437aba-8115-44b3-84df-8849e86a5a1a/200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R1_001.fastq.gz 4434135807 FASTQ NA 60437aba-8115-44b3-84df-8849e86a5a1a katmai +C3N-00577.RNA-Seq.R1.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/646f78df-cd18-4ce3-a1f6-9da37aef3308/200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R1_001.fastq.gz 3840518948 FASTQ NA 646f78df-cd18-4ce3-a1f6-9da37aef3308 katmai C3N-00577.RNA-Seq.R2.A C3N-00577 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/2cc2a75d-9c3e-4dea-aa07-08a8a446e33e/171212_UNC31-K00269_0102_AHN5MMBBXX_AGTTCC_S9_L003_R2_001.fastq.gz 4611916650 FASTQ NA 2cc2a75d-9c3e-4dea-aa07-08a8a446e33e katmai C3N-00577.RNA-Seq.R2.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/e920ce07-464f-4b33-8975-844c5780aa23/170828_UNC31-K00269_0077_AHLF33BBXX_GCCAAT_S11_L003_R2_001.fastq.gz 5008682904 FASTQ NA e920ce07-464f-4b33-8975-844c5780aa23 katmai +C3N-00577.RNA-Seq.R2.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/16cac540-faae-4c30-9a93-0401752d030b/200518_UNC32-K00270_0247_AHH573BBXY_TGGATCGA-GTGCGATA_S35_L005_R2_001.fastq.gz 6345599528 FASTQ NA 16cac540-faae-4c30-9a93-0401752d030b katmai +C3N-00577.RNA-Seq.R2.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/91d20682-7bde-4749-bac3-4f27f96f885a/200519_UNC31-K00269_0280_BHHKGNBBXY_AGGTTATA-CAGTTCCG_S29_L008_R2_001.fastq.gz 4984857975 FASTQ NA 91d20682-7bde-4749-bac3-4f27f96f885a katmai +C3N-00577.RNA-Seq.R2.T C3N-00577 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d0440171-58ed-4780-807e-8cc091ca601a/200519_UNC31-K00269_0280_BHHKGNBBXY_TCATCCTT-AGCGAGCT_S28_L007_R2_001.fastq.gz 4290629334 FASTQ NA d0440171-58ed-4780-807e-8cc091ca601a katmai C3N-00577.WXS.N.hg38 C3N-00577 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/516d84be-fe02-4d0f-93a4-58f010c5e381/c934aa94-bd1f-44cb-af1f-1ef429ef6471_gdc_realn.bam 36733661474 BAM hg38 516d84be-fe02-4d0f-93a4-58f010c5e381 katmai C3N-00577.WXS.T.hg38 C3N-00577 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f/bc253ff3-cdd3-4751-87e2-e3b0f7bbc296_gdc_realn.bam 45374724155 BAM hg38 bba7cbc0-bcd2-4af0-8c79-9a6ef01e6b5f katmai C3N-00578.MethArray.Green.A C3N-00578 LUAD Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4a38c9ae-e8b2-4b71-a26d-bb4fa60147c3/203027390028_R08C01_Grn.idat 13676231 IDAT NA 4a38c9ae-e8b2-4b71-a26d-bb4fa60147c3 katmai @@ -7115,15 +7454,30 @@ C3N-00645.RNA-Seq.R1.A C3N-00645 SAR RNA-Seq tissue_normal /diskmnt/Projects/cpt C3N-00645.RNA-Seq.R1.T C3N-00645 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/fa6f6113-b6ee-4562-b315-cb431266aa7e/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R1_001.fastq.gz 3411128169 FASTQ NA fa6f6113-b6ee-4562-b315-cb431266aa7e katmai C3N-00645.RNA-Seq.R2.A C3N-00645 SAR RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6f38262e-e64e-4bd3-8757-86b804fe38a3/180606_UNC32-K00270_0097_AHVCKFBBXX_GTGGCC_S16_L005_R2_001.fastq.gz 4384799259 FASTQ NA 6f38262e-e64e-4bd3-8757-86b804fe38a3 katmai C3N-00645.RNA-Seq.R2.T C3N-00645 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/46583f27-736f-462b-8f9d-cfaa50e2d622/171116_UNC31-K00269_0093_BHMFKJBBXX_GTGAAA_S2_L001_R2_001.fastq.gz 3600480828 FASTQ NA 46583f27-736f-462b-8f9d-cfaa50e2d622 katmai +C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/37b8b01b-8c19-4995-a162-6b8be926e7c9/204367470124_R02C01_Grn.idat 13677882 IDAT NA 37b8b01b-8c19-4995-a162-6b8be926e7c9 katmai +C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3f491707-af8b-492f-86ef-ee19e4d2e851/204372030087_R01C01_Grn.idat 13677880 IDAT NA 3f491707-af8b-492f-86ef-ee19e4d2e851 katmai +C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/87c1ec50-0cf1-4dd8-827c-a224101e3eac/204372030023_R01C01_Grn.idat 13677895 IDAT NA 87c1ec50-0cf1-4dd8-827c-a224101e3eac katmai C3N-00646.MethArray.Green.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/618149c4-73cf-4741-8f97-94c76712edc4/202184900111_R08C01_Grn.idat 13676246 IDAT NA 618149c4-73cf-4741-8f97-94c76712edc4 katmai +C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/842f8742-31bb-4626-95f5-fd60711a85e2/204372030023_R01C01_Red.idat 13677895 IDAT NA 842f8742-31bb-4626-95f5-fd60711a85e2 katmai +C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9c885e48-c8a0-4c8c-9f67-898f256a2578/204367470124_R02C01_Red.idat 13677882 IDAT NA 9c885e48-c8a0-4c8c-9f67-898f256a2578 katmai +C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bc5eb53e-19b0-4e15-b881-894da8df7efd/204372030087_R01C01_Red.idat 13677880 IDAT NA bc5eb53e-19b0-4e15-b881-894da8df7efd katmai C3N-00646.MethArray.Red.T C3N-00646 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3e36a198-fe37-420a-8db3-85c47f6edeea/202184900111_R08C01_Red.idat 13676246 IDAT NA 3e36a198-fe37-420a-8db3-85c47f6edeea katmai C3N-00646.miRNA-Seq.A C3N-00646 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ead4f01f-2e32-41da-8208-63d2b51d2835/181108_UNC31-K00269_0163_BH23TVBBXY_ATTCCT_S27_L002_R1_001.unaln.bam 195010889 BAM NA ead4f01f-2e32-41da-8208-63d2b51d2835 katmai +C3N-00646.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/077f2974-0d74-4a69-a446-9200ffd815aa/200526_UNC32-K00270_0248_BHH7WFBBXY_CCAACA_S6_L004_R1_001.unaln.bam 191987397 BAM NA 077f2974-0d74-4a69-a446-9200ffd815aa katmai +C3N-00646.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/247bcbef-5400-419f-8db8-acb8b86ade92/200526_UNC32-K00270_0248_BHH7WFBBXY_GGTAGC_S48_L004_R1_001.unaln.bam 289942848 BAM NA 247bcbef-5400-419f-8db8-acb8b86ade92 katmai +C3N-00646.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/99b94604-81ec-4d48-907e-716d1acc95af/200526_UNC32-K00270_0248_BHH7WFBBXY_CATTTT_S5_L004_R1_001.unaln.bam 327645548 BAM NA 99b94604-81ec-4d48-907e-716d1acc95af katmai C3N-00646.miRNA-Seq.T C3N-00646 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a294dd5b-3814-42c0-a477-de371ca9e62e/181113_UNC31-K00269_0164_AH23NNBBXY_CGTACG_S46_L002_R1_001.unaln.bam 245302766 BAM NA a294dd5b-3814-42c0-a477-de371ca9e62e katmai C3N-00646.RNA-Seq.genomic.A.hg38 C3N-00646 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/ed2e7bb3-ce75-4c90-875a-1266d91e04d7/86746dea-363b-46a1-a7b6-ba1ca7a3fc9a.rna_seq.genomic.gdc_realn.bam 8571832456 BAM hg38 ed2e7bb3-ce75-4c90-875a-1266d91e04d7 katmai C3N-00646.RNA-Seq.genomic.T.hg38 C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/1905cb0d-847d-474a-8a3d-059276618b7a/178b0551-e6f1-467a-9073-594b35ecedd1.rna_seq.genomic.gdc_realn.bam 7239127151 BAM hg38 1905cb0d-847d-474a-8a3d-059276618b7a katmai C3N-00646.RNA-Seq.R1.A C3N-00646 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/5b16b2e1-c184-43dd-8b14-44064ff163da/171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R1_001.fastq.gz 4063559955 FASTQ NA 5b16b2e1-c184-43dd-8b14-44064ff163da katmai +C3N-00646.RNA-Seq.R1.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/58135a5f-972c-46ae-b682-2bceead9893f/200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R1_001.fastq.gz 3334806323 FASTQ NA 58135a5f-972c-46ae-b682-2bceead9893f katmai +C3N-00646.RNA-Seq.R1.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/787e6ab3-0537-4dae-876f-591c36d1835d/200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R1_001.fastq.gz 3845346265 FASTQ NA 787e6ab3-0537-4dae-876f-591c36d1835d katmai +C3N-00646.RNA-Seq.R1.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/980a3cfc-b38a-4492-ad63-75639c800e22/200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R1_001.fastq.gz 4092568482 FASTQ NA 980a3cfc-b38a-4492-ad63-75639c800e22 katmai C3N-00646.RNA-Seq.R1.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6/170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R1_001.fastq.gz 3514252397 FASTQ NA 5d6d5ed2-ad55-4495-98ad-1c29f1d4eae6 katmai C3N-00646.RNA-Seq.R2.A C3N-00646 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/85a46f67-ca77-419b-af2b-936000d066e6/171212_UNC31-K00269_0102_AHN5MMBBXX_TTAGGC_S4_L001_R2_001.fastq.gz 4438333168 FASTQ NA 85a46f67-ca77-419b-af2b-936000d066e6 katmai +C3N-00646.RNA-Seq.R2.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5774ceef-ed62-42c6-bc2e-e854e2853ef4/200519_UNC31-K00269_0279_AHH5VTBBXY_AGCCTCAT-AGTAGAGA_S13_L004_R2_001.fastq.gz 4608167933 FASTQ NA 5774ceef-ed62-42c6-bc2e-e854e2853ef4 katmai +C3N-00646.RNA-Seq.R2.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/85e77e19-8680-44c9-814f-638fd0c5444e/200519_UNC31-K00269_0279_AHH5VTBBXY_GATTCTGC-GACGAGAG_S15_L004_R2_001.fastq.gz 3831563373 FASTQ NA 85e77e19-8680-44c9-814f-638fd0c5444e katmai +C3N-00646.RNA-Seq.R2.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/afa8aabc-841a-4780-88bd-096696b28751/200519_UNC31-K00269_0279_AHH5VTBBXY_ATGAGGCC-GTTAATTG_S2_L001_R2_001.fastq.gz 4730561082 FASTQ NA afa8aabc-841a-4780-88bd-096696b28751 katmai C3N-00646.RNA-Seq.R2.T C3N-00646 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/59f1b810-71de-45d3-9d50-96e3366fbe8f/170908_UNC31-K00269_0080_BHLJ52BBXX_ACTTGA_S7_L008_R2_001.fastq.gz 3858205480 FASTQ NA 59f1b810-71de-45d3-9d50-96e3366fbe8f katmai C3N-00646.WXS.N.hg38 C3N-00646 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/76ce08e4-2fd8-40e7-a591-2bfb0a3826d7/cd161335-d26a-4e88-9cbf-412997314bc7_gdc_realn.bam 36018660531 BAM hg38 76ce08e4-2fd8-40e7-a591-2bfb0a3826d7 katmai C3N-00646.WXS.T.hg38 C3N-00646 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/8c875266-61e6-4945-8e8b-c603b9b00b4b/decf1bd7-19b4-488c-a3ee-fec1eab0652d_gdc_realn.bam 53804459969 BAM hg38 8c875266-61e6-4945-8e8b-c603b9b00b4b katmai @@ -7236,17 +7590,27 @@ C3N-00732.WGS.T.hg38 C3N-00732 UCEC WGS tumor /diskmnt/Projects/cptac_downloads_ C3N-00732.WXS.N.hg38 C3N-00732 UCEC WXS blood_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/150a6603-767c-425d-9b07-0ad7cb82ee79/37b66075-5917-4067-9205-f63e6a26cc77_wxs_gdc_realn.bam 40858515482 BAM hg38 150a6603-767c-425d-9b07-0ad7cb82ee79 katmai C3N-00732.WXS.T.hg38 C3N-00732 UCEC WXS tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0d4d050c-a109-4b3f-87d4-9653b509a66d/3b194131-a71d-42d3-9af1-c87dc2865d07_wxs_gdc_realn.bam 58088447525 BAM hg38 0d4d050c-a109-4b3f-87d4-9653b509a66d katmai C3N-00733.MethArray.Green.A C3N-00733 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8989635e-ce61-4b14-bbf7-5221e0901d19/203027380024_R05C01_Grn.idat 13676229 IDAT NA 8989635e-ce61-4b14-bbf7-5221e0901d19 katmai +C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1889f376-da83-4273-9711-0857716ff931/204372030087_R04C01_Grn.idat 13677880 IDAT NA 1889f376-da83-4273-9711-0857716ff931 katmai +C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b43fac2a-3838-4f2c-8516-b93c5a2d472c/204367490056_R01C01_Grn.idat 13677888 IDAT NA b43fac2a-3838-4f2c-8516-b93c5a2d472c katmai C3N-00733.MethArray.Green.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/219e2b7e-0c3e-4f46-9f3e-39e32e2b34a4/202178770100_R02C01_Grn.idat 13676231 IDAT NA 219e2b7e-0c3e-4f46-9f3e-39e32e2b34a4 katmai C3N-00733.MethArray.Red.A C3N-00733 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/926e4e40-91d5-4034-95c7-46bf906f421f/203027380024_R05C01_Red.idat 13676229 IDAT NA 926e4e40-91d5-4034-95c7-46bf906f421f katmai +C3N-00733.MethArray.Red.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/62ca4ef9-6d20-42e3-9721-16f092172713/204372030087_R04C01_Red.idat 13677880 IDAT NA 62ca4ef9-6d20-42e3-9721-16f092172713 katmai +C3N-00733.MethArray.Red.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b918e3bb-530d-4893-b906-a16d7e529799/204367490056_R01C01_Red.idat 13677888 IDAT NA b918e3bb-530d-4893-b906-a16d7e529799 katmai C3N-00733.MethArray.Red.T C3N-00733 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ce9e0c16-3f6c-4b49-a55e-18103148317f/202178770100_R02C01_Red.idat 13676231 IDAT NA ce9e0c16-3f6c-4b49-a55e-18103148317f katmai C3N-00733.miRNA-Seq.A C3N-00733 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/59cb2240-19d9-402c-92fd-56494c90cf3c/181108_UNC31-K00269_0163_BH23TVBBXY_CAGATC_S7_L003_R1_001.unaln.bam 239324256 BAM NA 59cb2240-19d9-402c-92fd-56494c90cf3c katmai +C3N-00733.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/768e1e96-378a-402e-ae4a-ba49134aa900/200526_UNC32-K00270_0248_BHH7WFBBXY_CCGTCC_S28_L005_R1_001.unaln.bam 287602700 BAM NA 768e1e96-378a-402e-ae4a-ba49134aa900 katmai +C3N-00733.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c2526660-c719-4477-8f3b-27879585a8ca/200526_UNC32-K00270_0248_BHH7WFBBXY_ACAGTG_S35_L005_R1_001.unaln.bam 216224719 BAM NA c2526660-c719-4477-8f3b-27879585a8ca katmai C3N-00733.miRNA-Seq.T C3N-00733 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f6242666-5eb0-4cd3-bcb3-2c238d9dc3aa/180924_UNC31-K00269_0154_AHWTMLBBXX_GTGAAA_S12_L001_R1_001.unaln.bam 273686994 BAM NA f6242666-5eb0-4cd3-bcb3-2c238d9dc3aa katmai C3N-00733.RNA-Seq.genomic.A.hg38 C3N-00733 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/2603535b-5e15-46c1-89f7-48ae3f03848c/6abbd40c-2401-45ce-9b93-b1e340aa4524.rna_seq.genomic.gdc_realn.bam 6567448178 BAM hg38 2603535b-5e15-46c1-89f7-48ae3f03848c katmai C3N-00733.RNA-Seq.genomic.T.hg38 C3N-00733 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/bc82890e-f40d-422b-bd21-8fa6863eab81/12ae85c5-0e00-443b-82d7-829232524903.rna_seq.genomic.gdc_realn.bam 8186719030 BAM hg38 bc82890e-f40d-422b-bd21-8fa6863eab81 katmai C3N-00733.RNA-Seq.R1.A C3N-00733 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/e8f18475-f40c-430e-9d36-40289d91be5d/171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R1_001.fastq.gz 3327298978 FASTQ NA e8f18475-f40c-430e-9d36-40289d91be5d katmai C3N-00733.RNA-Seq.R1.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/28d915d0-355d-4a40-b2b0-4861b4223b89/170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R1_001.fastq.gz 3838590591 FASTQ NA 28d915d0-355d-4a40-b2b0-4861b4223b89 katmai +C3N-00733.RNA-Seq.R1.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/683ea76b-a4d4-42bc-802f-407d86f2db8c/200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R1_001.fastq.gz 4030868305 FASTQ NA 683ea76b-a4d4-42bc-802f-407d86f2db8c katmai +C3N-00733.RNA-Seq.R1.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b5289396-3301-4936-a42e-feb806cc356e/200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R1_001.fastq.gz 3662428965 FASTQ NA b5289396-3301-4936-a42e-feb806cc356e katmai C3N-00733.RNA-Seq.R2.A C3N-00733 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/43395028-ed4a-4afe-bd87-4f45cee73cec/171212_UNC31-K00269_0102_AHN5MMBBXX_CAGATC_S19_L005_R2_001.fastq.gz 3697005122 FASTQ NA 43395028-ed4a-4afe-bd87-4f45cee73cec katmai C3N-00733.RNA-Seq.R2.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/3e6b35d1-546a-4b2c-bbdf-17548ebefbf8/170912_UNC31-K00269_0081_AHL3YKBBXX_TGACCA_S8_L002_R2_001.fastq.gz 4229170027 FASTQ NA 3e6b35d1-546a-4b2c-bbdf-17548ebefbf8 katmai +C3N-00733.RNA-Seq.R2.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3a96f82a-c491-46e5-9910-b23d52f60c71/200518_UNC32-K00270_0247_AHH573BBXY_AATCCGGA-CTACAGTT_S39_L007_R2_001.fastq.gz 4779589866 FASTQ NA 3a96f82a-c491-46e5-9910-b23d52f60c71 katmai +C3N-00733.RNA-Seq.R2.T C3N-00733 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d4496247-bbd6-4f4f-ae65-d46d22bfc354/200518_UNC32-K00270_0247_AHH573BBXY_ATCCACTG-AGGTGCGT_S32_L005_R2_001.fastq.gz 4337400614 FASTQ NA d4496247-bbd6-4f4f-ae65-d46d22bfc354 katmai C3N-00733.WXS.N.hg38 C3N-00733 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/a4d7873b-dd6b-4f7d-bd66-ed3379d93007/c29ed504-d297-4fc3-ad09-200319492ed4_gdc_realn.bam 36976648847 BAM hg38 a4d7873b-dd6b-4f7d-bd66-ed3379d93007 katmai C3N-00733.WXS.T.hg38 C3N-00733 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8/2ad75cb1-668a-4d5a-b62c-254e0b82d045_gdc_realn.bam 36133726733 BAM hg38 2475e5cf-cadc-48ea-af0e-fc1b20eaf8a8 katmai C3N-00734.MethArray.Green.T C3N-00734 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/ec216333-38e0-450c-80a1-4e772ff8c366/202178770083_R01C01_Grn.idat 13676231 IDAT NA ec216333-38e0-450c-80a1-4e772ff8c366 katmai @@ -7455,16 +7819,26 @@ C3N-00850.WGS.T.hg38 C3N-00850 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1 C3N-00850.WXS.N.hg38 C3N-00850 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/513b27f2-8ec9-45d2-bcd4-f733bc617f3b/9872eab8-63d3-4882-877b-7b4de75bba37_gdc_realn.bam 36316463640 BAM hg38 513b27f2-8ec9-45d2-bcd4-f733bc617f3b katmai C3N-00850.WXS.T.hg38 C3N-00850 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/35036101-2e5d-4d47-bd7c-3eb638bcf6a2/850bd0cf-dd68-40b6-a6b6-83e42e76fd32_gdc_realn.bam 36640916648 BAM hg38 35036101-2e5d-4d47-bd7c-3eb638bcf6a2 katmai C3N-00852.MethArray.Green.A C3N-00852 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c455d9b4-e27f-430d-953e-ab94527dea9a/203027380024_R01C01_Grn.idat 13676241 IDAT NA c455d9b4-e27f-430d-953e-ab94527dea9a katmai +C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/ca0bb472-0422-4b69-bbac-951412dbea0d/204367400087_R02C01_Grn.idat 13677880 IDAT NA ca0bb472-0422-4b69-bbac-951412dbea0d katmai +C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cc503702-9b12-481f-909e-43c448745025/204372030071_R07C01_Grn.idat 13677890 IDAT NA cc503702-9b12-481f-909e-43c448745025 katmai C3N-00852.MethArray.Green.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/debb3bd8-aca6-411a-a4b8-c07a3d8c1526/202176290147_R01C01_Grn.idat 13676215 IDAT NA debb3bd8-aca6-411a-a4b8-c07a3d8c1526 katmai C3N-00852.MethArray.Red.A C3N-00852 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/dc64a0a2-277f-4f0f-beaa-aaac6bbd40ce/203027380024_R01C01_Red.idat 13676241 IDAT NA dc64a0a2-277f-4f0f-beaa-aaac6bbd40ce katmai +C3N-00852.MethArray.Red.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/34890c0e-b83c-4186-8578-6ffebdc412c7/204367400087_R02C01_Red.idat 13677880 IDAT NA 34890c0e-b83c-4186-8578-6ffebdc412c7 katmai +C3N-00852.MethArray.Red.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/43a39ed0-5b25-4b17-905e-e2a0fe895455/204372030071_R07C01_Red.idat 13677890 IDAT NA 43a39ed0-5b25-4b17-905e-e2a0fe895455 katmai C3N-00852.MethArray.Red.T C3N-00852 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/1bacbb16-3eb6-4dbb-a247-5e9dc90b6d10/202176290147_R01C01_Red.idat 13676215 IDAT NA 1bacbb16-3eb6-4dbb-a247-5e9dc90b6d10 katmai C3N-00852.miRNA-Seq.A C3N-00852 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2ae9b9c3-e0e9-44b4-8c04-215fc797e7aa/181108_UNC31-K00269_0162_AH255GBBXY_CATTTT_S11_L006_R1_001.unaln.bam 246666855 BAM NA 2ae9b9c3-e0e9-44b4-8c04-215fc797e7aa katmai +C3N-00852.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a564cb2a-9ce1-4773-98cc-ded738f05ba3/200526_UNC32-K00270_0248_BHH7WFBBXY_GTGGCC_S33_L005_R1_001.unaln.bam 242478790 BAM NA a564cb2a-9ce1-4773-98cc-ded738f05ba3 katmai +C3N-00852.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f4ab2c44-6466-4337-b394-e1d16a491b08/200526_UNC32-K00270_0248_BHH7WFBBXY_GTTTCG_S34_L005_R1_001.unaln.bam 373067205 BAM NA f4ab2c44-6466-4337-b394-e1d16a491b08 katmai C3N-00852.miRNA-Seq.T C3N-00852 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f3a5550a-175a-431e-a5ae-61c19addba72/180924_UNC31-K00269_0154_AHWTMLBBXX_GATCAG_S19_L003_R1_001.unaln.bam 214130020 BAM NA f3a5550a-175a-431e-a5ae-61c19addba72 katmai C3N-00852.RNA-Seq.genomic.A.hg38 C3N-00852 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/3c2864aa-4780-4fbc-a4e1-3ba907b4866b/26969c5f-312b-4251-9e52-44b292964041.rna_seq.genomic.gdc_realn.bam 9580543492 BAM hg38 3c2864aa-4780-4fbc-a4e1-3ba907b4866b katmai C3N-00852.RNA-Seq.genomic.T.hg38 C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/92da3f37-e257-4755-bbf8-7098993e94a3/4e42da05-239f-46cf-9c63-382551a56228.rna_seq.genomic.gdc_realn.bam 8553976389 BAM hg38 92da3f37-e257-4755-bbf8-7098993e94a3 katmai C3N-00852.RNA-Seq.R1.A C3N-00852 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/98cbfe35-2028-4b35-b294-7908bd384217/180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R1_001.fastq.gz 3923360468 FASTQ NA 98cbfe35-2028-4b35-b294-7908bd384217 katmai +C3N-00852.RNA-Seq.R1.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5d01f7ba-95a5-4f59-a2bd-35bd9eac516d/200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R1_001.fastq.gz 3984452183 FASTQ NA 5d01f7ba-95a5-4f59-a2bd-35bd9eac516d katmai +C3N-00852.RNA-Seq.R1.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d5c8ee92-cf50-456f-aa96-2ef73b985bfe/200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R1_001.fastq.gz 4104002160 FASTQ NA d5c8ee92-cf50-456f-aa96-2ef73b985bfe katmai C3N-00852.RNA-Seq.R1.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/9f137d4e-815b-42a1-9cd9-e937abeebbab/170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R1_001.fastq.gz 4265437093 FASTQ NA 9f137d4e-815b-42a1-9cd9-e937abeebbab katmai C3N-00852.RNA-Seq.R2.A C3N-00852 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac/GDC_import/data/3b929f29-a942-4894-8250-1f29c8bf68a2/180313_UNC32-K00270_0085_BHT2MGBBXX_GGCTAC_S40_L008_R2_001.fastq.gz 4438310010 FASTQ NA 3b929f29-a942-4894-8250-1f29c8bf68a2 katmai +C3N-00852.RNA-Seq.R2.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0/200519_UNC31-K00269_0279_AHH5VTBBXY_GGTACCTT-AAGACGTC_S4_L001_R2_001.fastq.gz 4969739181 FASTQ NA 12ecd8ec-5fc6-46ac-b79e-9b1e3918d8a0 katmai +C3N-00852.RNA-Seq.R2.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/17c99bea-d5f7-4049-8890-9ead17cddf4f/200518_UNC32-K00270_0247_AHH573BBXY_GCACGGAC-GTCTCGCA_S45_L008_R2_001.fastq.gz 4761749129 FASTQ NA 17c99bea-d5f7-4049-8890-9ead17cddf4f katmai C3N-00852.RNA-Seq.R2.T C3N-00852 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/14c88080-e7f7-4005-84a8-08b7c0bbdb1a/170912_UNC31-K00269_0081_AHL3YKBBXX_GAGTGG_S4_L001_R2_001.fastq.gz 4657233704 FASTQ NA 14c88080-e7f7-4005-84a8-08b7c0bbdb1a katmai C3N-00852.WXS.N.hg38 C3N-00852 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/9107d71e-50fa-4099-aff1-40319ef93b2f/85fedd41-5ca0-47c2-8d24-64e0c067178b_gdc_realn.bam 31571603166 BAM hg38 9107d71e-50fa-4099-aff1-40319ef93b2f katmai C3N-00852.WXS.T.hg38 C3N-00852 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/6cc1f066-bd5a-40e4-931e-c0921cc4dc0e/f9ac248b-a3c7-47f9-898e-8322e72b6b48_gdc_realn.bam 28220494250 BAM hg38 6cc1f066-bd5a-40e4-931e-c0921cc4dc0e katmai @@ -7574,12 +7948,21 @@ C3N-00880.WGS.N.hg38 C3N-00880 UCEC WGS blood_normal /diskmnt/Projects/cptac3_pr C3N-00880.WGS.T.hg38 C3N-00880 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/46d5c8ad-33ef-4601-afbd-9b24761939c4/90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 95731746049 BAM hg38 46d5c8ad-33ef-4601-afbd-9b24761939c4 katmai C3N-00880.WXS.N.hg38 C3N-00880 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/1a8134da-8b3b-4ef2-bef6-a09a7bba5847/d564a1a0-e99a-4998-8fa1-df8128379f65_gdc_realn.bam 53095766760 BAM hg38 1a8134da-8b3b-4ef2-bef6-a09a7bba5847 katmai C3N-00880.WXS.T.hg38 C3N-00880 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/dbc9b510-b274-4590-b23a-606d5ae71d48/90388559-98b6-4014-b201-f64e4965649b_gdc_realn.bam 38211643538 BAM hg38 dbc9b510-b274-4590-b23a-606d5ae71d48 katmai +C3N-00953.MethArray.Green.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4fbe467a-f9ce-440d-949f-4470601b6778/204372030127_R03C01_Grn.idat 13677880 IDAT NA 4fbe467a-f9ce-440d-949f-4470601b6778 katmai +C3N-00953.MethArray.Green.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dc95ffa1-a37d-4a0a-bcea-97117d80f7f1/204372030079_R03C01_Grn.idat 13677880 IDAT NA dc95ffa1-a37d-4a0a-bcea-97117d80f7f1 katmai C3N-00953.MethArray.Green.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/01385fca-c18f-437d-847e-b4a168c46193/202163530118_R05C01_Grn.idat 13676245 IDAT NA 01385fca-c18f-437d-847e-b4a168c46193 katmai +C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1014112e-9f81-4792-a507-89da52039f2c/204372030079_R03C01_Red.idat 13677880 IDAT NA 1014112e-9f81-4792-a507-89da52039f2c katmai +C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6014cf5a-7814-4eb5-b053-5c9b9dc4aa1f/204372030127_R03C01_Red.idat 13677880 IDAT NA 6014cf5a-7814-4eb5-b053-5c9b9dc4aa1f katmai C3N-00953.MethArray.Red.T C3N-00953 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b60b78f6-f562-41fc-9c3d-b7ce73b47b44/202163530118_R05C01_Red.idat 13676245 IDAT NA b60b78f6-f562-41fc-9c3d-b7ce73b47b44 katmai +C3N-00953.miRNA-Seq.T C3N-00953 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cbd76193-7344-4a9e-aed4-4b72f0dd1092/200526_UNC32-K00270_0248_BHH7WFBBXY_GCCAAT_S42_L005_R1_001.unaln.bam 242922238 BAM NA cbd76193-7344-4a9e-aed4-4b72f0dd1092 katmai C3N-00953.miRNA-Seq.T C3N-00953 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/bc67f62c-cdac-4c8d-96a1-6bcc56556b59/181119_UNC31-K00269_0165_AH27WCBBXY_TTAGGC_S27_L005_R1_001.unaln.bam 274368446 BAM NA bc67f62c-cdac-4c8d-96a1-6bcc56556b59 katmai C3N-00953.RNA-Seq.genomic.T.hg38 C3N-00953 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/1ab3850c-91b5-4bb9-adbd-2d5031291656/6f24d956-b568-4e88-bb8e-c815d8565c07.rna_seq.genomic.gdc_realn.bam 9039630000 BAM hg38 1ab3850c-91b5-4bb9-adbd-2d5031291656 katmai C3N-00953.RNA-Seq.R1.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/fddb0068-8209-43fb-b1bb-45f70688ba24/170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R1_001.fastq.gz 4660604210 FASTQ NA fddb0068-8209-43fb-b1bb-45f70688ba24 katmai +C3N-00953.RNA-Seq.R1.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/532616de-67ac-459a-afeb-b3153dd4f685/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R1_001.fastq.gz 3671257257 FASTQ NA 532616de-67ac-459a-afeb-b3153dd4f685 katmai +C3N-00953.RNA-Seq.R1.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f024b599-90cb-4640-a907-324ea7ef0a95/200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R1_001.fastq.gz 3361203837 FASTQ NA f024b599-90cb-4640-a907-324ea7ef0a95 katmai C3N-00953.RNA-Seq.R2.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/9cec05f2-4b61-4862-bff8-4d0b9e01a47f/170912_UNC31-K00269_0081_AHL3YKBBXX_GCCAAT_S9_L007_R2_001.fastq.gz 5067259916 FASTQ NA 9cec05f2-4b61-4862-bff8-4d0b9e01a47f katmai +C3N-00953.RNA-Seq.R2.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0bd50e24-a6a0-4c2c-ab7b-8d212adbce91/200518_UNC32-K00270_0247_AHH573BBXY_GCTTGTCA-GAACATAC_S34_L005_R2_001.fastq.gz 3902270374 FASTQ NA 0bd50e24-a6a0-4c2c-ab7b-8d212adbce91 katmai +C3N-00953.RNA-Seq.R2.T C3N-00953 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/570b6c64-408f-4ced-9426-d558d138f9a2/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L006_R2_001.fastq.gz 4359870205 FASTQ NA 570b6c64-408f-4ced-9426-d558d138f9a2 katmai C3N-00953.WXS.N.hg38 C3N-00953 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/dceac80d-e43b-4f91-a3da-34fa539976f3/c1eb9e6d-669b-4d1c-83c6-9710f4c80717_gdc_realn.bam 52512534170 BAM hg38 dceac80d-e43b-4f91-a3da-34fa539976f3 katmai C3N-00953.WXS.T.hg38 C3N-00953 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/23178ce9-1b2c-4276-a96d-1bf7e6c5e740/91cf314a-8f4d-4f05-bd33-1b7eef5974af_gdc_realn.bam 35792432243 BAM hg38 23178ce9-1b2c-4276-a96d-1bf7e6c5e740 katmai C3N-00954.MethArray.Green.A C3N-00954 PDA Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/e5326f61-c16e-4782-b000-6f054996c5e8/203561620052_R08C01_Grn.idat 13676212 IDAT NA e5326f61-c16e-4782-b000-6f054996c5e8 katmai @@ -8179,17 +8562,37 @@ C3N-01197.WGS.T.hg38 C3N-01197 GBM WGS tumor /diskmnt/Projects/cptac_downloads_6 C3N-01197.WXS.N.hg38 C3N-01197 GBM WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/ba871c1f-1766-4008-8b79-29ec2148b586/ae656dc4-96de-4152-a107-c7cb369d207e_gdc_realn.bam 36637489156 BAM hg38 ba871c1f-1766-4008-8b79-29ec2148b586 katmai C3N-01197.WXS.T.hg38 C3N-01197 GBM WXS tumor /diskmnt/Projects/cptac/GDC_import/data/813f42ab-91e9-4dbc-8d09-bf15289946f8/8a4a56fd-dd41-4555-b2ac-8f80c06a75e4_gdc_realn.bam 43619971997 BAM hg38 813f42ab-91e9-4dbc-8d09-bf15289946f8 katmai C3N-01200.MethArray.Green.A C3N-01200 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/13f31e09-fb0c-4826-98b0-35e9ac240679/203027380024_R02C01_Grn.idat 13676241 IDAT NA 13f31e09-fb0c-4826-98b0-35e9ac240679 katmai +C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2edef7b0-ed8e-4b67-8942-38bf97e24a9e/204372030090_R03C01_Grn.idat 13677880 IDAT NA 2edef7b0-ed8e-4b67-8942-38bf97e24a9e katmai +C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/348cf7cc-1f8c-43b8-b674-9765d113ecf3/204367490066_R04C01_Grn.idat 13677900 IDAT NA 348cf7cc-1f8c-43b8-b674-9765d113ecf3 katmai +C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/45deb597-b3eb-4918-81ee-e386fb0e93e9/204372030023_R04C01_Grn.idat 13677895 IDAT NA 45deb597-b3eb-4918-81ee-e386fb0e93e9 katmai +C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/d258d649-b531-429f-a9aa-407f445dcf13/204372030161_R04C01_Grn.idat 13677880 IDAT NA d258d649-b531-429f-a9aa-407f445dcf13 katmai C3N-01200.MethArray.Green.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3ceb6106-0d95-40e2-8993-b545fc0ea3ef/202184990059_R08C01_Grn.idat 13676231 IDAT NA 3ceb6106-0d95-40e2-8993-b545fc0ea3ef katmai C3N-01200.MethArray.Red.A C3N-01200 CCRCC Methylation Array tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/f7f0cb36-33c7-4b3e-8413-d1bd55f6dd9a/203027380024_R02C01_Red.idat 13676241 IDAT NA f7f0cb36-33c7-4b3e-8413-d1bd55f6dd9a katmai +C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2221cb59-81d0-43bd-a9d2-14b59ac7da55/204372030023_R04C01_Red.idat 13677895 IDAT NA 2221cb59-81d0-43bd-a9d2-14b59ac7da55 katmai +C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5bbbdfec-5cf9-44fc-b4af-fa87709f55f3/204372030090_R03C01_Red.idat 13677880 IDAT NA 5bbbdfec-5cf9-44fc-b4af-fa87709f55f3 katmai +C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6d92c5ab-c2a3-4ff8-9a22-b0d54e06cc79/204367490066_R04C01_Red.idat 13677900 IDAT NA 6d92c5ab-c2a3-4ff8-9a22-b0d54e06cc79 katmai +C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b76ec06c-d83c-4147-9651-07b7ac4500ae/204372030161_R04C01_Red.idat 13677880 IDAT NA b76ec06c-d83c-4147-9651-07b7ac4500ae katmai C3N-01200.MethArray.Red.T C3N-01200 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/80fe3577-8568-4647-9436-2e003699def0/202184990059_R08C01_Red.idat 13676231 IDAT NA 80fe3577-8568-4647-9436-2e003699def0 katmai C3N-01200.miRNA-Seq.A C3N-01200 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/2b9b314d-440b-41cd-8aca-2d67b15669e6/181108_UNC31-K00269_0163_BH23TVBBXY_ATGTCA_S15_L003_R1_001.unaln.bam 199182812 BAM NA 2b9b314d-440b-41cd-8aca-2d67b15669e6 katmai +C3N-01200.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/61f7977f-8b97-47aa-b0bb-192d3ec71e0b/200526_UNC32-K00270_0248_BHH7WFBBXY_CACTCA_S26_L002_R1_001.unaln.bam 241941968 BAM NA 61f7977f-8b97-47aa-b0bb-192d3ec71e0b katmai +C3N-01200.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/720cb1c4-b337-4511-89bb-c9ca5b1d8e4d/200526_UNC32-K00270_0248_BHH7WFBBXY_GAGTGG_S30_L004_R1_001.unaln.bam 216324191 BAM NA 720cb1c4-b337-4511-89bb-c9ca5b1d8e4d katmai C3N-01200.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7a633b33-7a00-43e0-898d-ae3a2dc9f54f/181113_UNC31-K00269_0164_AH23NNBBXY_GTTTCG_S45_L002_R1_001.unaln.bam 185603439 BAM NA 7a633b33-7a00-43e0-898d-ae3a2dc9f54f katmai +C3N-01200.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c4b8ea54-3e27-4a29-99b3-4f2d599b38ab/200526_UNC32-K00270_0248_BHH7WFBBXY_CGTACG_S29_L005_R1_001.unaln.bam 342099490 BAM NA c4b8ea54-3e27-4a29-99b3-4f2d599b38ab katmai +C3N-01200.miRNA-Seq.T C3N-01200 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/cdd2bbe0-7628-44a4-b65d-e645290c4fd3/200526_UNC32-K00270_0248_BHH7WFBBXY_TCGGCA_S20_L002_R1_001.unaln.bam 267558533 BAM NA cdd2bbe0-7628-44a4-b65d-e645290c4fd3 katmai C3N-01200.RNA-Seq.genomic.A.hg38 C3N-01200 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/af694c85-ce30-499b-b8e4-d7b1f89566e2/512702e6-499b-46cf-acf9-db3ae9145d10.rna_seq.genomic.gdc_realn.bam 7777556492 BAM hg38 af694c85-ce30-499b-b8e4-d7b1f89566e2 katmai C3N-01200.RNA-Seq.genomic.T.hg38 C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/90038cb7-b6f0-4eab-b1db-398845a40400/ce8e2b06-46f6-445b-9a61-42482f71b9c8.rna_seq.genomic.gdc_realn.bam 7596865842 BAM hg38 90038cb7-b6f0-4eab-b1db-398845a40400 katmai C3N-01200.RNA-Seq.R1.A C3N-01200 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/3622b01d-1aed-4d4c-bf81-6f3d3208683f/171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R1_001.fastq.gz 3995140615 FASTQ NA 3622b01d-1aed-4d4c-bf81-6f3d3208683f katmai C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/fb2e9eb7-49a1-4810-ad31-58b4411cdd05/170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R1_001.fastq.gz 3917366988 FASTQ NA fb2e9eb7-49a1-4810-ad31-58b4411cdd05 katmai +C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1c2bca41-bae5-42f4-9001-923894bc5448/200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R1_001.fastq.gz 4434094111 FASTQ NA 1c2bca41-bae5-42f4-9001-923894bc5448 katmai +C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/30628661-05d5-4fe1-be42-ee30dce69ec0/200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R1_001.fastq.gz 4438109303 FASTQ NA 30628661-05d5-4fe1-be42-ee30dce69ec0 katmai +C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/54a0b120-5335-4c89-83b8-3a48ef881d16/200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 2712382703 FASTQ NA 54a0b120-5335-4c89-83b8-3a48ef881d16 katmai +C3N-01200.RNA-Seq.R1.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bfb3ff85-07de-41ff-8de3-7b97721ecd15/200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R1_001.fastq.gz 3613492140 FASTQ NA bfb3ff85-07de-41ff-8de3-7b97721ecd15 katmai C3N-01200.RNA-Seq.R2.A C3N-01200 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/8fe43892-e94a-4789-be90-c32591c4a108/171212_UNC31-K00269_0102_AHN5MMBBXX_ATGTCA_S11_L003_R2_001.fastq.gz 4271303352 FASTQ NA 8fe43892-e94a-4789-be90-c32591c4a108 katmai C3N-01200.RNA-Seq.R2.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/def5db7e-16df-4a5f-8d32-ad1dac6b90f2/170905_UNC31-K00269_0079_AHLCF7BBXX_CCGTCC_S24_L007_R2_001.fastq.gz 4168322645 FASTQ NA def5db7e-16df-4a5f-8d32-ad1dac6b90f2 katmai +C3N-01200.RNA-Seq.R2.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/10047d32-3565-4e59-be8d-d18f00cf4da7/200608_UNC31-K00269_0281_AHH5NFBBXY_GTGAATAT-TCTCATTC_S8_L002_R2_001.fastq.gz 4848622324 FASTQ NA 10047d32-3565-4e59-be8d-d18f00cf4da7 katmai +C3N-01200.RNA-Seq.R2.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1f84a087-24d2-4c6c-b25e-638176a6e5b5/200519_UNC31-K00269_0280_BHHKGNBBXY_AACTGTAG-ACGCCGCA_S25_L007_R2_001.fastq.gz 4159998543 FASTQ NA 1f84a087-24d2-4c6c-b25e-638176a6e5b5 katmai +C3N-01200.RNA-Seq.R2.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1/200519_UNC31-K00269_0279_AHH5VTBBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3355844855 FASTQ NA 36fe36fd-4ec7-4b4b-978f-cc9fddcd3cb1 katmai +C3N-01200.RNA-Seq.R2.T C3N-01200 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/af9b177e-627b-45d3-8eaf-a1a6dd68dd33/200519_UNC31-K00269_0279_AHH5VTBBXY_GCAGAATT-ACCGGCCA_S3_L001_R2_001.fastq.gz 5377537098 FASTQ NA af9b177e-627b-45d3-8eaf-a1a6dd68dd33 katmai C3N-01200.WXS.N.hg38 C3N-01200 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/5ed7729f-924d-4be2-ac4d-9b8722e10eb9/985b6a8c-9bee-4c84-beb6-289937143d49_gdc_realn.bam 42998051781 BAM hg38 5ed7729f-924d-4be2-ac4d-9b8722e10eb9 katmai C3N-01200.WXS.T.hg38 C3N-01200 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/7ede714a-8cfc-4b71-a2d2-1e78c68ce6cf/0d15156f-e4c5-45a2-8904-33c991c2fd17_gdc_realn.bam 36200071299 BAM hg38 7ede714a-8cfc-4b71-a2d2-1e78c68ce6cf katmai C3N-01211.MethArray.Green.T C3N-01211 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/07d13ad1-12a3-4cc8-974e-a8b0e47f5cd7/202176290046_R08C01_Grn.idat 13676215 IDAT NA 07d13ad1-12a3-4cc8-974e-a8b0e47f5cd7 katmai @@ -8220,16 +8623,24 @@ C3N-01213.RNA-Seq.R1.T C3N-01213 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC C3N-01213.RNA-Seq.R2.T C3N-01213 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac/GDC_import/data/cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97/170905_UNC31-K00269_0079_AHLCF7BBXX_GTGAAA_S6_L008_R2_001.fastq.gz 3780022459 FASTQ NA cc5b3a0c-4ad0-4ec2-abb5-3a6de4cc6e97 katmai C3N-01213.WXS.N.hg38 C3N-01213 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/aeef0533-1970-4818-89c6-fc1d3dfc884e/fc169817-4564-405b-a1b0-f21511c2d8c8_gdc_realn.bam 38078650308 BAM hg38 aeef0533-1970-4818-89c6-fc1d3dfc884e katmai C3N-01213.WXS.T.hg38 C3N-01213 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/381a5802-b62b-44fe-bce1-177c69f293fe/3adc61ac-213f-4512-967d-308832c5145d_gdc_realn.bam 50398120362 BAM hg38 381a5802-b62b-44fe-bce1-177c69f293fe katmai +C3N-01214.MethArray.Green.T C3N-01214 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fdfb61c4-8b69-45dc-86e5-434cbd9e17b5/204367400148_R02C01_Grn.idat 13677880 IDAT NA fdfb61c4-8b69-45dc-86e5-434cbd9e17b5 katmai C3N-01214.MethArray.Green.T C3N-01214 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/b3985b9b-5848-4086-b34c-7b106644fa91/202176290116_R08C01_Grn.idat 13676226 IDAT NA b3985b9b-5848-4086-b34c-7b106644fa91 katmai +C3N-01214.MethArray.Red.T C3N-01214 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/7698c430-0194-422f-a7c7-6001224bb939/204367400148_R02C01_Red.idat 13677880 IDAT NA 7698c430-0194-422f-a7c7-6001224bb939 katmai C3N-01214.MethArray.Red.T C3N-01214 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/772d978c-ba58-4439-88b5-4b9a5d9260e0/202176290116_R08C01_Red.idat 13676226 IDAT NA 772d978c-ba58-4439-88b5-4b9a5d9260e0 katmai C3N-01214.miRNA-Seq.A C3N-01214 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a692a10f-6e9a-4c1a-a5a9-0257c9d78ba5/181108_UNC31-K00269_0163_BH23TVBBXY_CCGTCC_S16_L003_R1_001.unaln.bam 178579515 BAM NA a692a10f-6e9a-4c1a-a5a9-0257c9d78ba5 katmai +C3N-01214.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/67bc7004-b4f9-4db3-b650-051bee2ea139/200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L002_R1_001.unaln.bam 284557553 BAM NA 67bc7004-b4f9-4db3-b650-051bee2ea139 katmai +C3N-01214.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/690d0423-5d37-4f9f-98da-78579cb2bcd5/200526_UNC32-K00270_0248_BHH7WFBBXY_TCGAAG_S19_L002_R1_001.unaln.bam 249654007 BAM NA 690d0423-5d37-4f9f-98da-78579cb2bcd5 katmai C3N-01214.miRNA-Seq.T C3N-01214 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/15352afb-c843-4d81-b825-61d7dee999b3/181012_UNC32-K00270_0124_AH223CBBXY_CACGAT_S4_L006_R1_001.unaln.bam 225107791 BAM NA 15352afb-c843-4d81-b825-61d7dee999b3 katmai C3N-01214.RNA-Seq.genomic.A.hg38 C3N-01214 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/be70741d-c6b3-4d00-8237-b5e196607c04/086a26d5-90b6-4845-b027-cdf37e63b9b7.rna_seq.genomic.gdc_realn.bam 6872809060 BAM hg38 be70741d-c6b3-4d00-8237-b5e196607c04 katmai C3N-01214.RNA-Seq.genomic.T.hg38 C3N-01214 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/e3ea7072-fbf8-4201-b5f1-abf751cca624/a84038cc-64b6-4045-96e8-498e48d7a516.rna_seq.genomic.gdc_realn.bam 10067086618 BAM hg38 e3ea7072-fbf8-4201-b5f1-abf751cca624 katmai C3N-01214.RNA-Seq.R1.A C3N-01214 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/3239d526-b422-40a6-9101-0ecaa0d593e3/171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R1_001.fastq.gz 3727522006 FASTQ NA 3239d526-b422-40a6-9101-0ecaa0d593e3 katmai C3N-01214.RNA-Seq.R1.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/4a1f3026-ed39-4b21-82e4-9ba14ccbee40/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R1_001.fastq.gz 3991034378 FASTQ NA 4a1f3026-ed39-4b21-82e4-9ba14ccbee40 katmai +C3N-01214.RNA-Seq.R1.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/29c903b5-dfa7-4a7a-b93f-496886871939/200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R1_001.fastq.gz 3396025531 FASTQ NA 29c903b5-dfa7-4a7a-b93f-496886871939 katmai +C3N-01214.RNA-Seq.R1.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a54ec209-3dee-4648-8faf-0e4c910e63d4/200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R1_001.fastq.gz 4076990725 FASTQ NA a54ec209-3dee-4648-8faf-0e4c910e63d4 katmai C3N-01214.RNA-Seq.R2.A C3N-01214 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/10bd76f6-3520-42ca-ba2c-f51ea8fde07d/171212_UNC31-K00269_0102_AHN5MMBBXX_CCGTCC_S10_L003_R2_001.fastq.gz 3614155260 FASTQ NA 10bd76f6-3520-42ca-ba2c-f51ea8fde07d katmai C3N-01214.RNA-Seq.R2.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/0714c54f-a096-4e96-ac18-54d9703396bf/170906_UNC32-K00270_0058_BHLJ7FBBXX_TGACCA_S4_L001_R2_001.fastq.gz 4249427390 FASTQ NA 0714c54f-a096-4e96-ac18-54d9703396bf katmai +C3N-01214.RNA-Seq.R2.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/35d9563c-26b2-4e51-b02a-8632bab707df/200519_UNC31-K00269_0280_BHHKGNBBXY_CAATTAAC-CGAGATAT_S22_L006_R2_001.fastq.gz 3838234476 FASTQ NA 35d9563c-26b2-4e51-b02a-8632bab707df katmai +C3N-01214.RNA-Seq.R2.T C3N-01214 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/97999ddd-c398-400d-abf8-28fc172880d8/200519_UNC31-K00269_0280_BHHKGNBBXY_TGGCCGGT-TAGAGCGC_S24_L006_R2_001.fastq.gz 4730544227 FASTQ NA 97999ddd-c398-400d-abf8-28fc172880d8 katmai C3N-01214.WXS.N.hg38 C3N-01214 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/eabb7049-e2f9-44af-90be-01d5c496ccc6/68ccdeb9-9c90-4895-b97d-80761d49f19c_gdc_realn.bam 39621420718 BAM hg38 eabb7049-e2f9-44af-90be-01d5c496ccc6 katmai C3N-01214.WXS.T.hg38 C3N-01214 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/c6af3880-b6f9-4a6d-b473-bd82e256ae4f/cae3270e-4e3e-4cc1-9dee-5d2de40e6e63_gdc_realn.bam 53781194474 BAM hg38 c6af3880-b6f9-4a6d-b473-bd82e256ae4f katmai C3N-01217.MethArray.Green.T C3N-01217 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3fd361c0-f432-4977-a957-f3b73a7ec5bf/202163550072_R08C01_Grn.idat 13676236 IDAT NA 3fd361c0-f432-4977-a957-f3b73a7ec5bf katmai @@ -8252,28 +8663,48 @@ C3N-01219.WGS.N.hg38 C3N-01219 UCEC WGS blood_normal /diskmnt/Projects/cptac3_pr C3N-01219.WGS.T.hg38 C3N-01219 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/8fc2d44a-4784-476b-83f4-d860c3e7ef4b/14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 95267238417 BAM hg38 8fc2d44a-4784-476b-83f4-d860c3e7ef4b katmai C3N-01219.WXS.N.hg38 C3N-01219 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/6b91773f-2a59-4a80-ac8c-f7bd3a92755d/d4c44cff-6bfd-46e0-a542-426345f7afff_gdc_realn.bam 40317131638 BAM hg38 6b91773f-2a59-4a80-ac8c-f7bd3a92755d katmai C3N-01219.WXS.T.hg38 C3N-01219 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/8f2fb70a-9111-4662-b07b-937b3880b9f2/14e343cd-1aff-4e8b-8bd8-7c4813ec2405_gdc_realn.bam 48731152656 BAM hg38 8f2fb70a-9111-4662-b07b-937b3880b9f2 katmai +C3N-01220.MethArray.Green.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6fa99b43-1023-48df-a9fa-68d9c30e306b/204367490043_R01C01_Grn.idat 13677880 IDAT NA 6fa99b43-1023-48df-a9fa-68d9c30e306b katmai +C3N-01220.MethArray.Green.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bf81ac9a-3226-4c18-851d-6f562839e04d/204372030022_R02C01_Grn.idat 13677905 IDAT NA bf81ac9a-3226-4c18-851d-6f562839e04d katmai C3N-01220.MethArray.Green.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/4e214611-0a6e-4805-87c9-15c4cb644bff/202163550076_R08C01_Grn.idat 13676226 IDAT NA 4e214611-0a6e-4805-87c9-15c4cb644bff katmai +C3N-01220.MethArray.Red.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/489dd2a2-90d6-4046-b6f1-93332ad3346e/204367490043_R01C01_Red.idat 13677880 IDAT NA 489dd2a2-90d6-4046-b6f1-93332ad3346e katmai +C3N-01220.MethArray.Red.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fd5a752c-40f0-4964-bf45-b640d5144d58/204372030022_R02C01_Red.idat 13677905 IDAT NA fd5a752c-40f0-4964-bf45-b640d5144d58 katmai C3N-01220.MethArray.Red.T C3N-01220 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/740e9a14-4c09-4d1d-af5a-002b70afd5bf/202163550076_R08C01_Red.idat 13676226 IDAT NA 740e9a14-4c09-4d1d-af5a-002b70afd5bf katmai C3N-01220.miRNA-Seq.A C3N-01220 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c3359fb0-d474-4009-b3a0-8652a32a06c9/181108_UNC31-K00269_0163_BH23TVBBXY_GTAGAG_S17_L003_R1_001.unaln.bam 171349465 BAM NA c3359fb0-d474-4009-b3a0-8652a32a06c9 katmai +C3N-01220.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2dbed1b3-763d-435f-8fb9-917bf13c1a56/200526_UNC32-K00270_0248_BHH7WFBBXY_GACGAC_S12_L001_R1_001.unaln.bam 271185910 BAM NA 2dbed1b3-763d-435f-8fb9-917bf13c1a56 katmai +C3N-01220.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3381f99f-e5d8-4a18-8b18-c3ab6a019635/200526_UNC32-K00270_0248_BHH7WFBBXY_ATGAGC_S1_L004_R1_001.unaln.bam 277168649 BAM NA 3381f99f-e5d8-4a18-8b18-c3ab6a019635 katmai C3N-01220.miRNA-Seq.T C3N-01220 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/53eecf2b-a829-4e39-b8d0-0aea47593388/181113_UNC31-K00269_0164_AH23NNBBXY_GATCAG_S33_L004_R1_001.unaln.bam 225857428 BAM NA 53eecf2b-a829-4e39-b8d0-0aea47593388 katmai C3N-01220.RNA-Seq.genomic.A.hg38 C3N-01220 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/61caabc1-1768-4c3a-846a-5593a5b1ccfc/f035424d-0e87-4122-8618-71aa311ac939.rna_seq.genomic.gdc_realn.bam 9061139475 BAM hg38 61caabc1-1768-4c3a-846a-5593a5b1ccfc katmai C3N-01220.RNA-Seq.genomic.T.hg38 C3N-01220 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/857c910d-c464-400a-bb9b-4393a2902aa0/8abeb06f-2f2e-4117-8598-5271fb9566e1.rna_seq.genomic.gdc_realn.bam 7247997724 BAM hg38 857c910d-c464-400a-bb9b-4393a2902aa0 katmai C3N-01220.RNA-Seq.R1.A C3N-01220 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/6871b6fe-05b3-4de6-ae72-4ff2312f0383/171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R1_001.fastq.gz 4547071907 FASTQ NA 6871b6fe-05b3-4de6-ae72-4ff2312f0383 katmai C3N-01220.RNA-Seq.R1.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/a7721c68-237b-487d-8cff-3c5467cee627/170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R1_001.fastq.gz 3479993988 FASTQ NA a7721c68-237b-487d-8cff-3c5467cee627 katmai +C3N-01220.RNA-Seq.R1.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/390a79d2-0957-45b4-af79-059f55e8865a/200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R1_001.fastq.gz 3407315825 FASTQ NA 390a79d2-0957-45b4-af79-059f55e8865a katmai +C3N-01220.RNA-Seq.R1.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/3e813950-7da9-4dd9-a4a6-fde17a82a0dd/200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R1_001.fastq.gz 3636707658 FASTQ NA 3e813950-7da9-4dd9-a4a6-fde17a82a0dd katmai C3N-01220.RNA-Seq.R2.A C3N-01220 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/445899d0-1c6f-41be-aded-b4565954d913/171212_UNC31-K00269_0102_AHN5MMBBXX_GTCCGC_S12_L003_R2_001.fastq.gz 4928211983 FASTQ NA 445899d0-1c6f-41be-aded-b4565954d913 katmai C3N-01220.RNA-Seq.R2.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/302d01d4-74bd-4971-8955-86e606e3aad3/170905_UNC31-K00269_0079_AHLCF7BBXX_GTTTCG_S7_L008_R2_001.fastq.gz 3752516932 FASTQ NA 302d01d4-74bd-4971-8955-86e606e3aad3 katmai +C3N-01220.RNA-Seq.R2.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c9779aff-d269-4ba8-9abf-801cc26e10f7/200608_UNC31-K00269_0281_AHH5NFBBXY_TATCGCAC-CTTAGTGT_S1_L001_R2_001.fastq.gz 4201860940 FASTQ NA c9779aff-d269-4ba8-9abf-801cc26e10f7 katmai +C3N-01220.RNA-Seq.R2.T C3N-01220 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fa96db8d-5e7b-4a03-96c7-9ee08a3d7179/200519_UNC31-K00269_0279_AHH5VTBBXY_GTCGGAGC-GGTTATAA_S7_L002_R2_001.fastq.gz 4290988096 FASTQ NA fa96db8d-5e7b-4a03-96c7-9ee08a3d7179 katmai C3N-01220.WXS.N.hg38 C3N-01220 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/00678e28-01cc-423a-a99b-5b9ea325cf2b/9d8605f9-6281-4ce5-a4fa-4399e1902769_gdc_realn.bam 43802189710 BAM hg38 00678e28-01cc-423a-a99b-5b9ea325cf2b katmai C3N-01220.WXS.T.hg38 C3N-01220 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/61545e14-8d82-4101-8397-a13fc35295c5/5e08ba1d-7269-475b-bda6-e685083916a8_gdc_realn.bam 44272718325 BAM hg38 61545e14-8d82-4101-8397-a13fc35295c5 katmai +C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/0b467d26-740e-4b5c-abe6-c651bf2afc21/204367490029_R04C01_Grn.idat 13677885 IDAT NA 0b467d26-740e-4b5c-abe6-c651bf2afc21 katmai +C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/bdc6052a-7b1b-4d3a-9079-ef000f5791a8/204372030013_R01C01_Grn.idat 13677895 IDAT NA bdc6052a-7b1b-4d3a-9079-ef000f5791a8 katmai C3N-01261.MethArray.Green.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d00b0a0c-5332-4fff-8b9d-6a9428b2a35a/202184990059_R03C01_Grn.idat 13676231 IDAT NA d00b0a0c-5332-4fff-8b9d-6a9428b2a35a katmai +C3N-01261.MethArray.Red.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/465642a9-6f97-42f3-b00e-7d76d4d795f9/204367490029_R04C01_Red.idat 13677885 IDAT NA 465642a9-6f97-42f3-b00e-7d76d4d795f9 katmai +C3N-01261.MethArray.Red.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/813d0149-207c-4265-a63b-507aa644a3de/204372030013_R01C01_Red.idat 13677895 IDAT NA 813d0149-207c-4265-a63b-507aa644a3de katmai C3N-01261.MethArray.Red.T C3N-01261 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/8d20c0ac-eff1-47e7-b6dc-80c80dfa3422/202184990059_R03C01_Red.idat 13676231 IDAT NA 8d20c0ac-eff1-47e7-b6dc-80c80dfa3422 katmai C3N-01261.miRNA-Seq.A C3N-01261 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9e439b78-0d19-409d-9555-9e51f3ea304e/181108_UNC31-K00269_0163_BH23TVBBXY_GTGGCC_S20_L003_R1_001.unaln.bam 164844525 BAM NA 9e439b78-0d19-409d-9555-9e51f3ea304e katmai +C3N-01261.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/a5f1dfb6-27de-4023-b9b9-8c1a9a9fb7a9/200526_UNC32-K00270_0248_BHH7WFBBXY_CACGAT_S25_L004_R1_001.unaln.bam 393524491 BAM NA a5f1dfb6-27de-4023-b9b9-8c1a9a9fb7a9 katmai +C3N-01261.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b870a25b-6664-4383-83b2-22602e6e6ba6/200526_UNC32-K00270_0248_BHH7WFBBXY_CACCGG_S3_L004_R1_001.unaln.bam 323159596 BAM NA b870a25b-6664-4383-83b2-22602e6e6ba6 katmai C3N-01261.miRNA-Seq.T C3N-01261 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/45479a7d-231a-4363-abda-89e845bfe773/181012_UNC32-K00270_0124_AH223CBBXY_CATTTT_S8_L008_R1_001.unaln.bam 217343665 BAM NA 45479a7d-231a-4363-abda-89e845bfe773 katmai C3N-01261.RNA-Seq.genomic.A.hg38 C3N-01261 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/8a0e93f4-0322-49ed-8977-8cee5d8dd6b5/a9673081-a6d0-4720-b863-57db5ce55551.rna_seq.genomic.gdc_realn.bam 6874446394 BAM hg38 8a0e93f4-0322-49ed-8977-8cee5d8dd6b5 katmai C3N-01261.RNA-Seq.genomic.T.hg38 C3N-01261 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/56b5ff16-7057-4620-9238-0f66fe794efe/2a2931e7-ee2d-4150-8636-41e06f33e6d0.rna_seq.genomic.gdc_realn.bam 5702295607 BAM hg38 56b5ff16-7057-4620-9238-0f66fe794efe katmai C3N-01261.RNA-Seq.R1.A C3N-01261 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/bf23dd02-c938-4b78-855e-fde50768436a/171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R1_001.fastq.gz 3320794151 FASTQ NA bf23dd02-c938-4b78-855e-fde50768436a katmai C3N-01261.RNA-Seq.R1.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/5e055bcb-7988-4721-abca-d6ba8ddf2859/170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R1_001.fastq.gz 3171933083 FASTQ NA 5e055bcb-7988-4721-abca-d6ba8ddf2859 katmai +C3N-01261.RNA-Seq.R1.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/94432a7f-6bc9-476f-b180-6cf3be17d99d/200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R1_001.fastq.gz 3786784188 FASTQ NA 94432a7f-6bc9-476f-b180-6cf3be17d99d katmai +C3N-01261.RNA-Seq.R1.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c497a706-0042-4a1d-8fa7-46e0858543a2/200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R1_001.fastq.gz 4232641871 FASTQ NA c497a706-0042-4a1d-8fa7-46e0858543a2 katmai C3N-01261.RNA-Seq.R2.A C3N-01261 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/54968b79-2539-4097-90cc-160d7a2006c8/171212_UNC31-K00269_0102_AHN5MMBBXX_GTTTCG_S6_L002_R2_001.fastq.gz 3708468352 FASTQ NA 54968b79-2539-4097-90cc-160d7a2006c8 katmai C3N-01261.RNA-Seq.R2.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/eca54c3f-6f8a-48a5-ae0e-5f82c5d65522/170905_UNC31-K00269_0079_AHLCF7BBXX_GATCAG_S3_L001_R2_001.fastq.gz 3503487635 FASTQ NA eca54c3f-6f8a-48a5-ae0e-5f82c5d65522 katmai +C3N-01261.RNA-Seq.R2.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/175b3614-d9fb-4a4f-be79-911094a20cce/200519_UNC31-K00269_0279_AHH5VTBBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 4931865743 FASTQ NA 175b3614-d9fb-4a4f-be79-911094a20cce katmai +C3N-01261.RNA-Seq.R2.T C3N-01261 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/e84f5faf-e3b4-4324-91d2-699d6fbad519/200519_UNC31-K00269_0279_AHH5VTBBXY_GGCATTCT-CTAGCTTG_S11_L003_R2_001.fastq.gz 4209702146 FASTQ NA e84f5faf-e3b4-4324-91d2-699d6fbad519 katmai C3N-01261.WXS.N.hg38 C3N-01261 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/96cc5663-6c2f-44fe-b109-9985a54d138e/93bfb3d4-6285-4819-b54b-96c9994f54d4_gdc_realn.bam 38961955036 BAM hg38 96cc5663-6c2f-44fe-b109-9985a54d138e katmai C3N-01261.WXS.T.hg38 C3N-01261 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/d22da425-d65c-412c-a2b2-74ff21d39edc/991614e1-a4d3-44c4-a18a-dca3a34f009e_gdc_realn.bam 33798882094 BAM hg38 d22da425-d65c-412c-a2b2-74ff21d39edc katmai C3N-01267.MethArray.Green.T C3N-01267 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/3c376145-b897-4861-bedd-29f03c3b5c86/202184900111_R01C01_Grn.idat 13676246 IDAT NA 3c376145-b897-4861-bedd-29f03c3b5c86 katmai @@ -8784,16 +9215,26 @@ C3N-01521.WGS.N.hg38 C3N-01521 UCEC WGS blood_normal /diskmnt/Projects/cptac3_pr C3N-01521.WGS.T.hg38 C3N-01521 UCEC WGS tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/2c1c0ba9-0049-4e08-adbd-173e7d68433d/ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 97904942254 BAM hg38 2c1c0ba9-0049-4e08-adbd-173e7d68433d katmai C3N-01521.WXS.N.hg38 C3N-01521 UCEC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/c670d6d3-0ad3-481c-9336-20d351ffc7dc/ac16a9c0-e9f4-4bdf-ba76-78d9438f0b10_gdc_realn.bam 38183487649 BAM hg38 c670d6d3-0ad3-481c-9336-20d351ffc7dc katmai C3N-01521.WXS.T.hg38 C3N-01521 UCEC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/1c684370-d3c3-4bf9-82df-6cd1a2b107e2/ff6a7b50-074e-4229-a5b1-282d7e4c9208_gdc_realn.bam 33265636097 BAM hg38 1c684370-d3c3-4bf9-82df-6cd1a2b107e2 katmai +C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8d1029d1-f05e-46c0-94ac-b0ad150bd8b0/204372030085_R04C01_Grn.idat 13677880 IDAT NA 8d1029d1-f05e-46c0-94ac-b0ad150bd8b0 katmai +C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/9fdbbae6-8f71-40e8-8b9d-3681affacbc7/204372030011_R08C01_Grn.idat 13677890 IDAT NA 9fdbbae6-8f71-40e8-8b9d-3681affacbc7 katmai C3N-01522.MethArray.Green.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a8c16193-0217-4f9e-ae09-6c7c6dcbd51f/202178770143_R01C01_Grn.idat 13676241 IDAT NA a8c16193-0217-4f9e-ae09-6c7c6dcbd51f katmai +C3N-01522.MethArray.Red.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/1e891c17-304a-496e-a384-f9d036b5ab05/204372030011_R08C01_Red.idat 13677890 IDAT NA 1e891c17-304a-496e-a384-f9d036b5ab05 katmai +C3N-01522.MethArray.Red.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/5167377c-2ea7-4631-9fd0-c908a306d45c/204372030085_R04C01_Red.idat 13677880 IDAT NA 5167377c-2ea7-4631-9fd0-c908a306d45c katmai C3N-01522.MethArray.Red.T C3N-01522 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/d5083d8f-6cad-48e9-86a0-6a8127558d7a/202178770143_R01C01_Red.idat 13676241 IDAT NA d5083d8f-6cad-48e9-86a0-6a8127558d7a katmai C3N-01522.miRNA-Seq.A C3N-01522 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/410c5ba7-cffa-47e2-875a-cd4ecc6bcd26/181108_UNC31-K00269_0163_BH23TVBBXY_GTCCGC_S18_L003_R1_001.unaln.bam 175907803 BAM NA 410c5ba7-cffa-47e2-875a-cd4ecc6bcd26 katmai +C3N-01522.miRNA-Seq.T C3N-01522 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/035f9d77-c7f9-494a-8666-6c1a9d644dbc/200526_UNC32-K00270_0248_BHH7WFBBXY_ATTCCT_S2_L004_R1_001.unaln.bam 331444243 BAM NA 035f9d77-c7f9-494a-8666-6c1a9d644dbc katmai +C3N-01522.miRNA-Seq.T C3N-01522 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/6bfbb836-949f-4354-b723-dbdfea4fd255/200526_UNC32-K00270_0248_BHH7WFBBXY_ACTGAT_S21_L004_R1_001.unaln.bam 353133256 BAM NA 6bfbb836-949f-4354-b723-dbdfea4fd255 katmai C3N-01522.miRNA-Seq.T C3N-01522 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c806271f-a03b-4a34-a792-70fc1508033f/181012_UNC32-K00270_0124_AH223CBBXY_CATGGC_S7_L008_R1_001.unaln.bam 256370556 BAM NA c806271f-a03b-4a34-a792-70fc1508033f katmai C3N-01522.RNA-Seq.genomic.A.hg38 C3N-01522 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/1260f0a1-1b8f-4a83-b6d4-671a13e3ecc3/959214b2-d48d-4492-adb0-197fa683d274.rna_seq.genomic.gdc_realn.bam 8446374699 BAM hg38 1260f0a1-1b8f-4a83-b6d4-671a13e3ecc3 katmai C3N-01522.RNA-Seq.genomic.T.hg38 C3N-01522 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/99eebd1e-3525-4f90-92d3-6f0caa4ddb8c/3f29ede0-8fba-4717-8184-53ff2e4d7eab.rna_seq.genomic.gdc_realn.bam 6872129880 BAM hg38 99eebd1e-3525-4f90-92d3-6f0caa4ddb8c katmai C3N-01522.RNA-Seq.R1.A C3N-01522 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/c5bcda2b-0deb-4201-8a2e-a084eb4e7913/171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R1_001.fastq.gz 4323260349 FASTQ NA c5bcda2b-0deb-4201-8a2e-a084eb4e7913 katmai C3N-01522.RNA-Seq.R1.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/2627ae9b-1a95-4fff-9221-647706199549/170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R1_001.fastq.gz 3487797290 FASTQ NA 2627ae9b-1a95-4fff-9221-647706199549 katmai +C3N-01522.RNA-Seq.R1.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/408e63b6-0791-4337-bdb3-7287703499da/200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R1_001.fastq.gz 3718770514 FASTQ NA 408e63b6-0791-4337-bdb3-7287703499da katmai +C3N-01522.RNA-Seq.R1.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/f077a03a-268f-45d7-9010-417fe026a87b/200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R1_001.fastq.gz 4358892188 FASTQ NA f077a03a-268f-45d7-9010-417fe026a87b katmai C3N-01522.RNA-Seq.R2.A C3N-01522 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/9e46539f-5d80-471e-9d57-2ef355a2c155/171212_UNC31-K00269_0102_AHN5MMBBXX_GTGAAA_S16_L004_R2_001.fastq.gz 4165359528 FASTQ NA 9e46539f-5d80-471e-9d57-2ef355a2c155 katmai C3N-01522.RNA-Seq.R2.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4/170830_UNC31-K00269_0078_AHLCVMBBXX_CAGATC_S1_L007_R2_001.fastq.gz 3799127488 FASTQ NA ba7d5cb5-d91f-4501-a9d4-f0edf2a247d4 katmai +C3N-01522.RNA-Seq.R2.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2fd64739-e004-49a1-989a-b8524889d712/200519_UNC31-K00269_0279_AHH5VTBBXY_CTTGGTAT-CCAAGTCC_S6_L002_R2_001.fastq.gz 4224799005 FASTQ NA 2fd64739-e004-49a1-989a-b8524889d712 katmai +C3N-01522.RNA-Seq.R2.T C3N-01522 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/c2771b42-ead4-4fa2-8070-33bae5712e94/200519_UNC31-K00269_0279_AHH5VTBBXY_ACTAAGAT-AACCGCGG_S5_L002_R2_001.fastq.gz 4905885878 FASTQ NA c2771b42-ead4-4fa2-8070-33bae5712e94 katmai C3N-01522.WXS.N.hg38 C3N-01522 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/2cfcc93b-fea4-4e4a-8ac9-e6f0202c05f7/54d1fe86-bb61-483d-a650-a13697f5e4b5_gdc_realn.bam 45116067067 BAM hg38 2cfcc93b-fea4-4e4a-8ac9-e6f0202c05f7 katmai C3N-01522.WXS.T.hg38 C3N-01522 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/c5bffbd5-ed94-4032-ae1b-e15439ccb39f/c4027887-51e8-40b2-956a-ba6daf3ee157_gdc_realn.bam 44643903219 BAM hg38 c5bffbd5-ed94-4032-ae1b-e15439ccb39f katmai C3N-01523.MethArray.Green.T C3N-01523 SAR Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/a1d3668e-c820-4d54-8dff-cd71a1ac9700/202234370086_R06C01_Grn.idat 13676231 IDAT NA a1d3668e-c820-4d54-8dff-cd71a1ac9700 katmai @@ -8806,16 +9247,26 @@ C3N-01523.RNA-Seq.R1.A C3N-01523 SAR RNA-Seq tissue_normal /diskmnt/Projects/cpt C3N-01523.RNA-Seq.R1.T C3N-01523 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/20b7b2db-8294-42c0-bb2d-fde19e2c79d4/171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R1_001.fastq.gz 4124394565 FASTQ NA 20b7b2db-8294-42c0-bb2d-fde19e2c79d4 katmai C3N-01523.RNA-Seq.R2.A C3N-01523 SAR RNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/c1a28fb3-c7fa-4949-bff0-b4d6684f62e2/180516_UNC32-K00270_0095_AHTY5LBBXX_ATCACG_S3_L007_R2_001.fastq.gz 4206500430 FASTQ NA c1a28fb3-c7fa-4949-bff0-b4d6684f62e2 katmai C3N-01523.RNA-Seq.R2.T C3N-01523 SAR RNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/6f7ad0ef-7db7-4825-90ac-57e458fc783e/171107_UNC32-K00270_0063_BHLNTCBBXX_CGATGT_S64_L008_R2_001.fastq.gz 4474140736 FASTQ NA 6f7ad0ef-7db7-4825-90ac-57e458fc783e katmai +C3N-01524.MethArray.Green.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2c45f520-b5f7-4cbd-9e95-a99a7861d947/204367490048_R01C01_Grn.idat 13677885 IDAT NA 2c45f520-b5f7-4cbd-9e95-a99a7861d947 katmai +C3N-01524.MethArray.Green.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/333cf649-8535-4381-964b-a81298f7ed69/204367470157_R02C01_Grn.idat 13677880 IDAT NA 333cf649-8535-4381-964b-a81298f7ed69 katmai C3N-01524.MethArray.Green.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/0528194a-e0c1-4d0f-86a5-ad77173dc2a1/202178770008_R03C01_Grn.idat 13676231 IDAT NA 0528194a-e0c1-4d0f-86a5-ad77173dc2a1 katmai +C3N-01524.MethArray.Red.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/2f4dcc6c-c9cb-4452-b793-4901db2f867a/204367490048_R01C01_Red.idat 13677885 IDAT NA 2f4dcc6c-c9cb-4452-b793-4901db2f867a katmai +C3N-01524.MethArray.Red.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/b76c3c1c-7a7f-4eff-b01e-81e1c43cdece/204367470157_R02C01_Red.idat 13677880 IDAT NA b76c3c1c-7a7f-4eff-b01e-81e1c43cdece katmai C3N-01524.MethArray.Red.T C3N-01524 CCRCC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/08946f85-77d8-47da-827e-bcf65f59a67f/202178770008_R03C01_Red.idat 13676231 IDAT NA 08946f85-77d8-47da-827e-bcf65f59a67f katmai C3N-01524.miRNA-Seq.A C3N-01524 CCRCC miRNA-Seq tissue_normal /diskmnt/Projects/cptac_downloads_7/GDC_import/data/9768e29b-6352-4f23-bf23-131546c4247b/181108_UNC31-K00269_0163_BH23TVBBXY_GTGAAA_S19_L003_R1_001.unaln.bam 201410246 BAM NA 9768e29b-6352-4f23-bf23-131546c4247b katmai +C3N-01524.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/dda69548-003e-4580-9310-d11e6314de6e/200526_UNC32-K00270_0248_BHH7WFBBXY_CAACTA_S24_L004_R1_001.unaln.bam 352090110 BAM NA dda69548-003e-4580-9310-d11e6314de6e katmai +C3N-01524.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/fbd2e238-c5f9-4a25-8d3e-9e53b15547c3/200526_UNC32-K00270_0248_BHH7WFBBXY_CAAAAG_S23_L004_R1_001.unaln.bam 273890281 BAM NA fbd2e238-c5f9-4a25-8d3e-9e53b15547c3 katmai C3N-01524.miRNA-Seq.T C3N-01524 CCRCC miRNA-Seq tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/7ab139b6-8554-439d-8737-440ae68417a9/181113_UNC31-K00269_0164_AH23NNBBXY_GTGGCC_S44_L002_R1_001.unaln.bam 251002653 BAM NA 7ab139b6-8554-439d-8737-440ae68417a9 katmai C3N-01524.RNA-Seq.genomic.A.hg38 C3N-01524 CCRCC RNA-Seq tissue_normal /diskmnt/Projects/cptac3_primary_1/GDC_import/data/fb24330b-08cf-4f32-a557-57c0542eb8c9/82c6df3d-3e72-493d-9b5c-34528927c972.rna_seq.genomic.gdc_realn.bam 7507673669 BAM hg38 fb24330b-08cf-4f32-a557-57c0542eb8c9 katmai C3N-01524.RNA-Seq.genomic.T.hg38 C3N-01524 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac3_primary_1/GDC_import/data/1add83fe-fae8-4e52-91cb-b69af739d50d/d26803a8-972c-4d7e-8d8e-fe56a64211ef.rna_seq.genomic.gdc_realn.bam 7690719644 BAM hg38 1add83fe-fae8-4e52-91cb-b69af739d50d katmai C3N-01524.RNA-Seq.R1.A C3N-01524 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/fa8f236e-200e-46e4-8007-936910f8863a/171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R1_001.fastq.gz 3655993717 FASTQ NA fa8f236e-200e-46e4-8007-936910f8863a katmai C3N-01524.RNA-Seq.R1.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/5a150b59-3d3c-4be6-9c89-f8067a652e60/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R1_001.fastq.gz 3725590065 FASTQ NA 5a150b59-3d3c-4be6-9c89-f8067a652e60 katmai +C3N-01524.RNA-Seq.R1.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/4af6c8b6-f787-4d0c-99b0-6c968c820180/200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R1_001.fastq.gz 3969477324 FASTQ NA 4af6c8b6-f787-4d0c-99b0-6c968c820180 katmai +C3N-01524.RNA-Seq.R1.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8af7e4df-ca69-471b-a47f-2d6a3a9a5489/200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R1_001.fastq.gz 3834752470 FASTQ NA 8af7e4df-ca69-471b-a47f-2d6a3a9a5489 katmai C3N-01524.RNA-Seq.R2.A C3N-01524 CCRCC RNA-Seq tissue_normal /diskmnt/primary/cptac3/GDC_import/data/77f448c3-5a83-4fea-95c9-8c999c378f49/171212_UNC31-K00269_0102_AHN5MMBBXX_GTGGCC_S5_L002_R2_001.fastq.gz 4048304952 FASTQ NA 77f448c3-5a83-4fea-95c9-8c999c378f49 katmai C3N-01524.RNA-Seq.R2.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/primary/cptac3/GDC_import/data/e12775ce-0aac-444a-8f8f-83eea65b1ce5/170830_UNC31-K00269_0078_AHLCVMBBXX_ACTTGA_S4_L007_R2_001.fastq.gz 4045324111 FASTQ NA e12775ce-0aac-444a-8f8f-83eea65b1ce5 katmai +C3N-01524.RNA-Seq.R2.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8a444662-4d13-445e-9499-f11dbae935da/200519_UNC31-K00269_0279_AHH5VTBBXY_CCGTGAAG-CAGTGGAT_S10_L003_R2_001.fastq.gz 4532509428 FASTQ NA 8a444662-4d13-445e-9499-f11dbae935da katmai +C3N-01524.RNA-Seq.R2.T C3N-01524 CCRCC RNA-Seq tumor /diskmnt/Projects/cptac_downloads_6/GDC_import/data/8d356193-a566-4fd9-a190-3b120c552740/200519_UNC31-K00269_0279_AHH5VTBBXY_TCCAACGC-TTGGACTT_S8_L002_R2_001.fastq.gz 4665222178 FASTQ NA 8d356193-a566-4fd9-a190-3b120c552740 katmai C3N-01524.WXS.N.hg38 C3N-01524 CCRCC WXS blood_normal /diskmnt/Projects/cptac/GDC_import/data/65168a7a-2fd4-4413-bd46-5753add070d2/492c07b1-0c0c-4b13-b2d2-db8a6694d819_gdc_realn.bam 38788722501 BAM hg38 65168a7a-2fd4-4413-bd46-5753add070d2 katmai C3N-01524.WXS.T.hg38 C3N-01524 CCRCC WXS tumor /diskmnt/Projects/cptac/GDC_import/data/3257506d-9d0c-4517-9c74-e098097b6536/5e8dd278-8b37-41fa-a827-7f417da498cd_gdc_realn.bam 34597436053 BAM hg38 3257506d-9d0c-4517-9c74-e098097b6536 katmai C3N-01525.MethArray.Green.T C3N-01525 UCEC Methylation Array tumor /diskmnt/Projects/cptac_downloads_7/GDC_import/data/68dca642-1c48-462e-82c7-4a99fe470bdb/202234380058_R05C01_Grn.idat 13676231 IDAT NA 68dca642-1c48-462e-82c7-4a99fe470bdb katmai