diff --git a/CPTAC3.Catalog.Summary.dat b/CPTAC3.Catalog.Summary.dat index 161dc42..0e1f55b 100644 --- a/CPTAC3.Catalog.Summary.dat +++ b/CPTAC3.Catalog.Summary.dat @@ -1312,7 +1312,7 @@ C3L-03729 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-03730 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03731 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03732 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-03733 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-03733 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03735 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-03736 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-03737 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -1406,7 +1406,7 @@ C3L-04081 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3L-04082 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-04083 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3L-04084 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3L-04085 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-04085 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04086 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04089 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04090 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT @@ -1482,7 +1482,7 @@ C3L-04378 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA. C3L-04379 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3L-04380 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04391 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3L-04392 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-04392 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04401 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-04402 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA C3L-04404 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA @@ -1766,7 +1766,7 @@ C3L-05229 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq W C3L-05230 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05231 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05232 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3L-05239 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3L-05239 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05240 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05241 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3L-05256 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3339,10 +3339,10 @@ C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-03789 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03790 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03791 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-03792 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-03792 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03793 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03794 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-03796 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-03796 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-03797 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03800 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-03802 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray @@ -3425,7 +3425,7 @@ C3N-04121 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04122 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04123 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04124 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA -C3N-04125 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04125 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04126 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04127 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-04128 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3434,7 +3434,7 @@ C3N-04132 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04133 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04134 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04135 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04138 LSCC WGS.hg19 WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04138 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04139 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04140 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04141 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3510,7 +3510,7 @@ C3N-04325 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04330 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04382 LUAD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-04383 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04384 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04384 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04385 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04386 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04387 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3520,11 +3520,11 @@ C3N-04441 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04442 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04443 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04444 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04445 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04445 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04446 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04447 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04448 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04449 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04449 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04450 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04451 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04452 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3558,12 +3558,12 @@ C3N-04655 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04656 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04658 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04659 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04660 LSCC WGS.hg19 WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04660 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04661 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04662 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04662 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04663 LSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04664 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04665 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04665 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04666 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04667 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04668 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3578,7 +3578,7 @@ C3N-04676 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04683 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04684 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04686 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT -C3N-04687 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04687 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04688 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04689 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04690 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3586,7 +3586,7 @@ C3N-04691 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T C3N-04692 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04693 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT C3N-04694 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04695 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04695 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04696 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04697 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04698 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3613,7 +3613,7 @@ C3N-04910 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04941 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04942 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04943 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04944 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04944 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04945 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04946 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04947 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3621,7 +3621,7 @@ C3N-04948 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04949 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04950 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04981 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-04982 LSCC WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-04982 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04983 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04984 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-04985 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3634,7 +3634,7 @@ C3N-04991 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-04992 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05037 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05038 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05039 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05039 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05040 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05061 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05062 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3661,7 +3661,7 @@ C3N-05100 LSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq C3N-05111 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05112 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05113 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05114 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05114 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05115 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05117 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05118 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3671,7 +3671,7 @@ C3N-05131 CM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq W C3N-05132 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05133 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05134 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05135 GBM WGS.hg19 WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05135 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05136 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05137 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05138 SAR WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray @@ -3698,7 +3698,7 @@ C3N-05624 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq C3N-05627 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05629 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA C3N-05630 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray -C3N-05911 TBD WGS.hg19 WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray +C3N-05911 TBD WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05912 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05913 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray C3N-05914 LSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA diff --git a/CPTAC3.Catalog.dat b/CPTAC3.Catalog.dat index 6d766c3..cccd197 100644 --- a/CPTAC3.Catalog.dat +++ b/CPTAC3.Catalog.dat @@ -12613,6 +12613,8 @@ C3L-03728.WXS.T.hg38 C3L-03728 GBM WXS tumor CPT0225760006 269ffccf-de74-4303-8d C3L-03733.miRNA-Seq.T C3L-03733 GBM miRNA-Seq tumor CPT0388870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GATCAG_S30_L007_R1_001.unaln.bam 223566229 BAM NA 10d636a4-81d8-42c4-a6b0-c6a7fd06b140 4f8c18eeb73beece79024f090ea0aa73 NA Primary Tumor C3L-03733-01 C3L-03733.RNA-Seq.R1.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R1_001.fastq.gz 3784619809 FASTQ NA d3c8b80a-f15c-47ad-927e-96483a71a4ac 8a7625be123cf1142d9d514d3dd2f0fe NA Primary Tumor C3L-03733-01 C3L-03733.RNA-Seq.R2.T C3L-03733 GBM RNA-Seq tumor CPT0388870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AGTTCAGG-CCAACAGA_S1_L001_R2_001.fastq.gz 4354534233 FASTQ NA d68a3a3f-d8d9-488f-b581-3eb6bf3c545f 3417e6f248552d41697758862f7c9a80 NA Primary Tumor C3L-03733-01 +C3L-03733.WGS.N C3L-03733 GBM WGS blood_normal CPT0388900002 CPT0388900002.WholeGenome.RP-2158.bam 25383296813 BAM NA cd628747-fd76-4da6-97cb-6e20282d4b6a f60aa2f2e02306c83488611b2cf877ce hg19 Blood Derived Normal C3L-03733-31 +C3L-03733.WGS.T C3L-03733 GBM WGS tumor CPT0388870006 CPT0388870006.WholeGenome.RP-2158.bam 21210221177 BAM NA 085c2ec3-e073-4e33-b105-b7a31acfd571 930a132c5a56fb79f5a2efd0e2be2ff5 hg19 Primary Tumor C3L-03733-01 C3L-03733.WXS.N C3L-03733 GBM WXS blood_normal CPT0388900002 CPT0388900002.WholeExome.RP-1303.bam 25281066656 BAM NA 899e62b6-5d45-429c-b1a8-1de6e24057c5 5cdca3407113895fc108311062353b93 hg19 Blood Derived Normal C3L-03733-31 C3L-03733.WXS.T C3L-03733 GBM WXS tumor CPT0388870006 CPT0388870006.WholeExome.RP-1303.bam 26953591550 BAM NA 9f09db89-5fb9-43ab-9858-a6958bfff22b 6536aa66cea208db82f3004be2b63cf7 hg19 Primary Tumor C3L-03733-01 C3L-03735.MethArray.Green.T C3L-03735 GBM Methylation Array tumor CPT0264120006 204372030139_R02C01_Grn.idat 13677880 IDAT Green 1f3898f2-8567-4571-9c7e-6701ab7e09b2 e4ea6995a9d4330685d9c6c88da21b46 NA Primary Tumor C3L-03735-01 @@ -13455,6 +13457,8 @@ C3L-04084.WXS.T.hg38 C3L-04084 GBM WXS tumor CPT0217100006 a47119eb-35fd-4fd3-92 C3L-04085.miRNA-Seq.T C3L-04085 GBM miRNA-Seq tumor CPT0242520010 201209_UNC32-K00270_0265_AHJ55WBBXY_GGCTAC_S32_L007_R1_001.unaln.bam 287761601 BAM NA bc6d5dfb-bb31-45ae-8b0e-2a08360a5cd7 cb6a11627511330be2551dabf94fb84e NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.RNA-Seq.R1.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R1_001.fastq.gz 4245996180 FASTQ NA 25f5bea4-fef4-4378-9ccb-8a5befebf88a f7da59772143538816e2c5dd6b9d4b60 NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.RNA-Seq.R2.T C3L-04085 GBM RNA-Seq tumor CPT0242520010 201030_UNC32-K00270_0263_AHJ7K3BBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4917989962 FASTQ NA f0486b67-d5ff-4ae5-97ff-218d95b1e496 d94ec5a4807f86bac4a3cf58aea162d1 NA Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 +C3L-04085.WGS.N C3L-04085 GBM WGS blood_normal CPT0243440002 CPT0243440002.WholeGenome.RP-2158.bam 22966209999 BAM NA 01ee3659-ba85-44ef-b3f6-0af789f0ac5f 92e7683a106258351e6cd8a9dd07ef23 hg19 Blood Derived Normal C3L-04085-31 +C3L-04085.WGS.T C3L-04085 GBM WGS tumor CPT0242520007 CPT0242520007.WholeGenome.RP-2158.bam 22101856002 BAM NA fc6a67f7-5b0c-428b-875e-8a1443af63f5 799fdc32c48861a960360077ea6e8a22 hg19 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04085.WXS.N C3L-04085 GBM WXS blood_normal CPT0243440002 CPT0243440002.WholeExome.RP-1303.bam 21928962196 BAM NA 1f09d693-58d4-4604-920f-69d7385f0be8 d747d50fe35cbb81a70c1d991424d8d7 hg19 Blood Derived Normal C3L-04085-31 C3L-04085.WXS.T C3L-04085 GBM WXS tumor CPT0242520007 CPT0242520007.WholeExome.RP-1303.bam 26495108597 BAM NA ac44b834-57a0-4a5e-99aa-f58c500d1c8c bc2f83b05fcb8053703d3e909e52dfa6 hg19 Primary Tumor C3L-04085-01,C3L-04085-02,C3L-04085-04 C3L-04090.MethArray.Green.T C3L-04090 GBM Methylation Array tumor CPT0265630007 204367400087_R03C01_Grn.idat 13677880 IDAT Green 2932c1e2-8908-4191-a617-94849275268c 467ed866460d854441fab8f05910ce57 NA Primary Tumor C3L-04090-01,C3L-04090-02,C3L-04090-03,C3L-04090-04 @@ -13889,6 +13893,8 @@ C3L-04391.WXS.T.hg38 C3L-04391 LSCC WXS tumor CPT0234560006 a52caf88-af54-482a-a C3L-04392.miRNA-Seq.T C3L-04392 GBM miRNA-Seq tumor CPT0393310009 201209_UNC32-K00270_0265_AHJ55WBBXY_TAGCTT_S38_L007_R1_001.unaln.bam 358392894 BAM NA 5432af42-018a-4faa-8492-77175e136ac0 47bf2742dd7a32550d450c429c968694 NA Primary Tumor C3L-04392-03 C3L-04392.RNA-Seq.R1.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 4077700493 FASTQ NA d815c7ac-1edc-4e57-a53b-947849bdb025 7f57961d1f57e808fba6a0a2d9b8869f NA Primary Tumor C3L-04392-03 C3L-04392.RNA-Seq.R2.T C3L-04392 GBM RNA-Seq tumor CPT0393310009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 4606344863 FASTQ NA 65353cb8-0cb1-4747-a95d-b11ff0bc7361 5cdf19e1b0bae31ef1932a8e1f1e687d NA Primary Tumor C3L-04392-03 +C3L-04392.WGS.N C3L-04392 GBM WGS blood_normal CPT0392370002 CPT0392370002.WholeGenome.RP-2158.bam 24049436111 BAM NA f243bcd7-9195-4d38-817f-618977fb28eb c2775ba6b3e3e724e3ee4db10ef63778 hg19 Blood Derived Normal C3L-04392-31 +C3L-04392.WGS.T C3L-04392 GBM WGS tumor CPT0393310006 CPT0393310006.WholeGenome.RP-2158.bam 25106387064 BAM NA 35aee152-5492-4664-8706-ca92247a2a81 f55a8d674bd88870ed7e381417c7214e hg19 Primary Tumor C3L-04392-03 C3L-04392.WXS.N C3L-04392 GBM WXS blood_normal CPT0392370002 CPT0392370002.WholeExome.RP-1303.bam 29321820408 BAM NA 097aa948-f10b-46c4-b757-6cdb889edd9a abb9dd25e41f6240ac63d471f6fbeb75 hg19 Blood Derived Normal C3L-04392-31 C3L-04392.WXS.T C3L-04392 GBM WXS tumor CPT0393310006 CPT0393310006.WholeExome.RP-1303.bam 23350456251 BAM NA c050abe1-2236-4049-91c5-97cfb29cf143 84e7bac0f009916352bb4210e72c58ad hg19 Primary Tumor C3L-04392-03 C3L-04402.MethArray.Green.A C3L-04402 LSCC Methylation Array tissue_normal CPT0281070006 204372030106_R08C01_Grn.idat 13677885 IDAT Green 6acb3061-7ba5-4fa5-85a4-598fe4854d5c fe1cca1aa5969c53a1fe7600d48c3d13 NA Solid Tissue Normal C3L-04402-06 @@ -15457,6 +15463,8 @@ C3L-05225.WXS.T.hg38 C3L-05225 LSCC WXS tumor CPT0296570006 81cdcf02-73f2-42cc-9 C3L-05239.miRNA-Seq.T C3L-05239 GBM miRNA-Seq tumor CPT0346710009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTTGA_S23_L007_R1_001.unaln.bam 218458045 BAM NA 9dea0013-93dc-4c87-bdc8-bc98d18238bf 4089d0052e0ac168b4411703515ed4b0 NA Primary Tumor C3L-05239-05 C3L-05239.RNA-Seq.R1.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R1_001.fastq.gz 3756355481 FASTQ NA 8161f3a1-1b1a-442f-aaf3-faabd976c99a 017652ccbf783557146fac20f6b01bfe NA Primary Tumor C3L-05239-05 C3L-05239.RNA-Seq.R2.T C3L-05239 GBM RNA-Seq tumor CPT0346710009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TGGATCGA-GTGCGATA_S4_L001_R2_001.fastq.gz 4279749843 FASTQ NA b2cc1d59-536e-4c59-89df-f6808282e91f caab0a5abb6f92364ade534073d9ad61 NA Primary Tumor C3L-05239-05 +C3L-05239.WGS.N C3L-05239 GBM WGS blood_normal CPT0346770002 CPT0346770002.WholeGenome.RP-2158.bam 24306484177 BAM NA f50882a9-ba11-46d8-8ae1-b3db9fe73ca6 9e50f542d916427f958a5d28b4fafbd1 hg19 Blood Derived Normal C3L-05239-31 +C3L-05239.WGS.T C3L-05239 GBM WGS tumor CPT0346710006 CPT0346710006.WholeGenome.RP-2158.bam 23404612085 BAM NA 5f728e2a-492a-4fd8-b33a-3cfd30bba9cf 0e484ffc3e5d09555523e7ddc81bd1f4 hg19 Primary Tumor C3L-05239-05 C3L-05239.WXS.N C3L-05239 GBM WXS blood_normal CPT0346770002 CPT0346770002.WholeExome.RP-1303.bam 19041494244 BAM NA e8806b58-3c7b-4542-bba9-fb85d3bcd231 6597ef1065aad1aa88005ad879145822 hg19 Blood Derived Normal C3L-05239-31 C3L-05239.WXS.T C3L-05239 GBM WXS tumor CPT0346710006 CPT0346710006.WholeExome.RP-1303.bam 18743445741 BAM NA 12ae1706-4063-446f-931a-67559587801f 1578bf468e186202b42f5367283f3647 hg19 Primary Tumor C3L-05239-05 C3L-05369.MethArray.Green.A C3L-05369 LSCC Methylation Array tissue_normal CPT0294480006 204372030015_R04C01_Grn.idat 13677905 IDAT Green f5a79f0d-1a10-43d8-963c-685f261d9d66 b9796189bbec29d0836d54392b69c525 NA Solid Tissue Normal C3L-05369-08 @@ -32537,11 +32545,15 @@ C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor CPT0248160007 a12853e7-7ad9-40e5-a7 C3N-03792.miRNA-Seq.T C3N-03792 GBM miRNA-Seq tumor CPT0292720009 201209_UNC32-K00270_0265_AHJ55WBBXY_TGACCA_S39_L007_R1_001.unaln.bam 244313348 BAM NA 3a95afa8-0cee-4b25-ae66-30901cbe1a34 8c8174ab15872e79256ee95566f44dd3 NA Primary Tumor C3N-03792-01 C3N-03792.RNA-Seq.R1.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R1_001.fastq.gz 4211537598 FASTQ NA dc36ac00-dcf4-4714-9a22-e1b19e708b23 61a607b7d255f541e9c5b6f656a0be25 NA Primary Tumor C3N-03792-01 C3N-03792.RNA-Seq.R2.T C3N-03792 GBM RNA-Seq tumor CPT0292720009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GGACTTGG-CGCAGACG_S9_L003_R2_001.fastq.gz 4697922147 FASTQ NA a7b201e1-89f6-4622-b6d8-a6271f6ab253 a0f10daed3f37e74ae2c5b7b15f29aee NA Primary Tumor C3N-03792-01 +C3N-03792.WGS.N C3N-03792 GBM WGS blood_normal CPT0292740002 CPT0292740002.WholeGenome.RP-2158.bam 26554543598 BAM NA 9f010cbf-7023-41b0-b6d8-60d9f7ddc4c4 89b222f52c79b6526d36d48ec8b6417f hg19 Blood Derived Normal C3N-03792-31 +C3N-03792.WGS.T C3N-03792 GBM WGS tumor CPT0292720006 CPT0292720006.WholeGenome.RP-2158.bam 24306496119 BAM NA 53615a7a-6378-4b4f-804c-266c02f512f1 7aee45e623770016561c477b8774c8c3 hg19 Primary Tumor C3N-03792-01 C3N-03792.WXS.N C3N-03792 GBM WXS blood_normal CPT0292740002 CPT0292740002.WholeExome.RP-1303.bam 22254955383 BAM NA 8e2c02df-13d4-4874-9846-dcaad8847f04 cb8a03e9845b788b41fea8d6d1a13584 hg19 Blood Derived Normal C3N-03792-31 C3N-03792.WXS.T C3N-03792 GBM WXS tumor CPT0292720006 CPT0292720006.WholeExome.RP-1303.bam 25530290850 BAM NA abcd035f-5b1a-4bad-8a77-53f065088d4b 176ee3a16da362a8f7c128c9b3ae0494 hg19 Primary Tumor C3N-03792-01 C3N-03796.miRNA-Seq.T C3N-03796 GBM miRNA-Seq tumor CPT0285160009 201209_UNC32-K00270_0265_AHJ55WBBXY_TTAGGC_S40_L007_R1_001.unaln.bam 218247021 BAM NA c8ea651a-1acd-4d2d-9eeb-ba9b6b431dba da3281ca424a165f206878cc53ad5d31 NA Primary Tumor C3N-03796-01 C3N-03796.RNA-Seq.R1.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R1_001.fastq.gz 5946520512 FASTQ NA b454290d-cc02-4dba-9054-63f52ec8be2c da3b180947ae187d9f4913ac73b86a7e NA Primary Tumor C3N-03796-01 C3N-03796.RNA-Seq.R2.T C3N-03796 GBM RNA-Seq tumor CPT0285160009 201030_UNC32-K00270_0263_AHJ7K3BBXY_TTATAACC-GATATCGA_S10_L003_R2_001.fastq.gz 6290102156 FASTQ NA a8e13d55-81ac-4ea7-bdf8-4113326e7051 43fc642d3589af3fbc6fcefddf6b6ff3 NA Primary Tumor C3N-03796-01 +C3N-03796.WGS.N C3N-03796 GBM WGS blood_normal CPT0285170002 CPT0285170002.WholeGenome.RP-2158.bam 26251928465 BAM NA 0886d2a8-bb29-46eb-98f3-46981d11faf8 e4159fbe70eac8dd22a81cc854a476b9 hg19 Blood Derived Normal C3N-03796-31 +C3N-03796.WGS.T C3N-03796 GBM WGS tumor CPT0285160006 CPT0285160006.WholeGenome.RP-2158.bam 19793089386 BAM NA 79fd3ccf-6a9f-403d-9bc8-55212dc9ad1a 446a1f2dfb79766993216a4de9d98a8a hg19 Primary Tumor C3N-03796-01 C3N-03796.WXS.N C3N-03796 GBM WXS blood_normal CPT0285170002 CPT0285170002.WholeExome.RP-1303.bam 21275282524 BAM NA 98c74117-697c-4f57-a461-30992c6f2d94 bd6742acc427ba0e41e07f371ca81cf6 hg19 Blood Derived Normal C3N-03796-31 C3N-03796.WXS.T C3N-03796 GBM WXS tumor CPT0285160006 CPT0285160006.WholeExome.RP-1303.bam 20614985474 BAM NA d58e49fd-4ac5-4873-a836-b161a9ba3847 ea5fcf1ee04819c2f7adc099589facc0 hg19 Primary Tumor C3N-03796-01 C3N-03797.MethArray.Green.T C3N-03797 GBM Methylation Array tumor CPT0285180007 204367470127_R02C01_Grn.idat 13677892 IDAT Green 2ce08812-ff06-4a1f-958d-652569e29da1 d695e3e3ba532865b1a2178a66d55072 NA Primary Tumor C3N-03797-01,C3N-03797-02,C3N-03797-03 @@ -33440,6 +33452,8 @@ C3N-04125.RNA-Seq.R1.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103 C3N-04125.RNA-Seq.R1.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R1_001.fastq.gz 3905362326 FASTQ NA 4f5333d2-f5e8-4238-93cc-a43a1d94750e 65ad4f909f5752d94e987520e4809bea NA Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.RNA-Seq.R2.A C3N-04125 LSCC RNA-Seq tissue_normal CPT0330820009 201103_UNC31-K00269_0292_AHJ772BBXY_TTACAGGA-TGACAAGC_S12_L003_R2_001.fastq.gz 3271914743 FASTQ NA 2fdfef3a-5922-4158-81fc-d9c462eb95e6 2a98d09075e8e73f0a532c0456946567 NA Solid Tissue Normal C3N-04125-03 C3N-04125.RNA-Seq.R2.T C3N-04125 LSCC RNA-Seq tumor CPT0330800010 201103_UNC31-K00269_0292_AHJ772BBXY_TTGGACTC-GGAAGCAG_S28_L007_R2_001.fastq.gz 4220282539 FASTQ NA e72caf0c-fb26-4d24-b284-a15ed7df1ed0 231c9af82aeb330b50ede11dfa74e3ca NA Primary Tumor C3N-04125-01,C3N-04125-02 +C3N-04125.WGS.N C3N-04125 LSCC WGS blood_normal CPT0330890002 CPT0330890002.WholeGenome.RP-2158.bam 23494158499 BAM NA 9090021d-c5a0-4767-bfbb-cbe66143f9a5 45f2e2d633cd65ea929e79119aeff56b hg19 Blood Derived Normal C3N-04125-31 +C3N-04125.WGS.T C3N-04125 LSCC WGS tumor CPT0330800007 CPT0330800007.WholeGenome.RP-2158.bam 22713160615 BAM NA 7c9b9f19-1419-4c85-99ce-14da8c77a074 54121c197ba837f0a22c892f6c324dc5 hg19 Primary Tumor C3N-04125-01,C3N-04125-02 C3N-04125.WXS.A C3N-04125 LSCC WXS tissue_normal CPT0330820006 CPT0330820006.WholeExome.RP-1303.bam 19769989073 BAM NA 0acce9d3-f89c-4f80-ba9c-d7c92085faa4 0fc317a02e810dd1f178ca20ab0d43d9 hg19 Solid Tissue Normal C3N-04125-03 C3N-04125.WXS.N C3N-04125 LSCC WXS blood_normal CPT0330890002 CPT0330890002.WholeExome.RP-1303.bam 20926657494 BAM NA 4091c798-b3a7-4ebf-bf7c-8a7cc2056390 a9809d4a337814a3ee6301f56d5d0f3c hg19 Blood Derived Normal C3N-04125-31 C3N-04125.WXS.T C3N-04125 LSCC WXS tumor CPT0330800007 CPT0330800007.WholeExome.RP-1303.bam 19641445624 BAM NA ba3a911e-f0de-4cc1-ad53-50ba0a3eda4e f39d8c19a751a81b00102097acbd7bdc hg19 Primary Tumor C3N-04125-01,C3N-04125-02 @@ -33494,6 +33508,8 @@ C3N-04138.RNA-Seq.R1.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103 C3N-04138.RNA-Seq.R1.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R1_001.fastq.gz 4031983308 FASTQ NA 3fc427a9-70d7-4182-a316-f528f080ccd8 ad91378fc02c95b5ab020ae3ca55e853 NA Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.RNA-Seq.R2.A C3N-04138 LSCC RNA-Seq tissue_normal CPT0331020006 201103_UNC31-K00269_0292_AHJ772BBXY_GGCATTCT-CTAGCTTG_S10_L003_R2_001.fastq.gz 2970136492 FASTQ NA 3b79257c-871d-4e0e-99e7-3024bc78d0e1 cf1c9299608146bd271bcbd02438864f NA Solid Tissue Normal C3N-04138-03 C3N-04138.RNA-Seq.R2.T C3N-04138 LSCC RNA-Seq tumor CPT0331000010 201103_UNC31-K00269_0292_AHJ772BBXY_GGCTTAAG-TCGTGACC_S27_L007_R2_001.fastq.gz 4378549451 FASTQ NA 12eebe5b-3249-49a2-9394-4cb8c0151e21 57abdf95bfe917a4a985a0ae9e3f2131 NA Primary Tumor C3N-04138-01,C3N-04138-02 +C3N-04138.WGS.N C3N-04138 LSCC WGS blood_normal CPT0331090002 CPT0331090002.WholeGenome.RP-2158.bam 21805976070 BAM NA dbc67567-3103-4284-80aa-b3f6bf3b0a65 811d1c1d9ef54ed3d57705133760d7ba hg19 Blood Derived Normal C3N-04138-31 +C3N-04138.WGS.T C3N-04138 LSCC WGS tumor CPT0331000007 CPT0331000007.WholeGenome.RP-2158.bam 27914789343 BAM NA ef545b12-556c-4747-9567-1d471b7315f1 67d2d120b6842abc306d1d23010af99e hg19 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04138.WXS.N C3N-04138 LSCC WXS blood_normal CPT0331090002 CPT0331090002.WholeExome.RP-1303.bam 28694395073 BAM NA 452ddcbf-da03-4208-8679-d7bc2f7a670f d04c9ffed3251467fe810e74c1d6c1e5 hg19 Blood Derived Normal C3N-04138-31 C3N-04138.WXS.T C3N-04138 LSCC WXS tumor CPT0331000007 CPT0331000007.WholeExome.RP-1303.bam 19694203636 BAM NA 4d3904df-d98f-425b-902d-1d83fd6e3a1b 2083839e8ab1cbcbaa3b0c49bf5f9b9b hg19 Primary Tumor C3N-04138-01,C3N-04138-02 C3N-04152.MethArray.Green.A C3N-04152 HNSCC Methylation Array tissue_normal CPT0224000006 203271740111_R03C01_Grn.idat 13676206 IDAT Green 6a9d95d0-966f-4036-8ed8-980e9f25367c aa7a73beb38782b71f16bdf78c3f9167 NA Solid Tissue Normal C3N-04152-06 @@ -34000,6 +34016,8 @@ C3N-04384.RNA-Seq.R1.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103 C3N-04384.RNA-Seq.R1.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R1_001.fastq.gz 3161150739 FASTQ NA 2efb8b86-7963-494b-8cf8-070601581e4c 86a5337cd914c1c3d1d949e9668515f4 NA Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.RNA-Seq.R2.A C3N-04384 LSCC RNA-Seq tissue_normal CPT0331120009 201103_UNC31-K00269_0292_AHJ772BBXY_AATGCCTC-TCGATCCA_S2_L001_R2_001.fastq.gz 4544440132 FASTQ NA 54e12111-0171-43cc-bc0a-2258d1d9baa8 b35dc57faa81321f6b37ed33a7f0166c NA Solid Tissue Normal C3N-04384-03 C3N-04384.RNA-Seq.R2.T C3N-04384 LSCC RNA-Seq tumor CPT0331100010 201103_UNC31-K00269_0292_AHJ772BBXY_AATCCGGA-CTACAGTT_S25_L007_R2_001.fastq.gz 3461343173 FASTQ NA e5cb1010-199f-44cf-b523-6fcade44dda5 2b05c5641b920de75ee424bfd51dfe22 NA Primary Tumor C3N-04384-01,C3N-04384-02 +C3N-04384.WGS.N C3N-04384 LSCC WGS blood_normal CPT0332110002 CPT0332110002.WholeGenome.RP-2158.bam 26808051879 BAM NA f2d7d0be-9e8e-4b4b-a101-c7ad831863e8 5ac075b829135c6c5deef4f472bd5370 hg19 Blood Derived Normal C3N-04384-31 +C3N-04384.WGS.T C3N-04384 LSCC WGS tumor CPT0331100007 CPT0331100007.WholeGenome.RP-2158.bam 24242977076 BAM NA d41e33d2-4f07-4464-af9e-85e6a9dfb964 1691ca01b9754b7e55fa40bc21f538b1 hg19 Primary Tumor C3N-04384-01,C3N-04384-02 C3N-04384.WXS.A C3N-04384 LSCC WXS tissue_normal CPT0331120006 CPT0331120006.WholeExome.RP-1303.bam 22577166982 BAM NA 03269cbf-925c-400f-b4b9-0d456b569c63 88559a576d770747f2b69140d3bbfc15 hg19 Solid Tissue Normal C3N-04384-03 C3N-04384.WXS.N C3N-04384 LSCC WXS blood_normal CPT0332110002 CPT0332110002.WholeExome.RP-1303.bam 28330042483 BAM NA 6d69112d-2b77-4676-b24a-4ee39790b026 b58d3d6752198bc3392b07b55edbde9c hg19 Blood Derived Normal C3N-04384-31 C3N-04384.WXS.T C3N-04384 LSCC WXS tumor CPT0331100007 CPT0331100007.WholeExome.RP-1303.bam 35107427907 BAM NA 99125eac-a48f-481c-8448-5dfe181de91e 2f0665ee17c9d7908c3f4fd2cbab4ba1 hg19 Primary Tumor C3N-04384-01,C3N-04384-02 @@ -34009,6 +34027,8 @@ C3N-04445.RNA-Seq.R1.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103 C3N-04445.RNA-Seq.R1.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R1_001.fastq.gz 4184341827 FASTQ NA 765a6172-1c0f-4bad-b7a8-da971e31402d c34c1bb187a1f89d0f3f0e7426004123 NA Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.RNA-Seq.R2.A C3N-04445 LSCC RNA-Seq tissue_normal CPT0332540009 201103_UNC31-K00269_0292_AHJ772BBXY_TACCGAGG-CCTGAACT_S11_L003_R2_001.fastq.gz 3560512926 FASTQ NA 2dd3b8ff-9556-4d0f-9a0d-32232c124842 bb36286628aa267a9bfa458c9bf2189a NA Solid Tissue Normal C3N-04445-03 C3N-04445.RNA-Seq.R2.T C3N-04445 LSCC RNA-Seq tumor CPT0332520010 201103_UNC31-K00269_0292_AHJ772BBXY_CGGCGTGA-GCGCCTGT_S22_L006_R2_001.fastq.gz 4696197419 FASTQ NA 843e3841-e979-4135-b0dc-1b7f97be3091 4118d1a7d47f3e932f2e8e35afb34524 NA Primary Tumor C3N-04445-01,C3N-04445-02 +C3N-04445.WGS.N C3N-04445 LSCC WGS blood_normal CPT0332610002 CPT0332610002.WholeGenome.RP-2158.bam 25594571712 BAM NA 90cc388f-ca4b-4602-a62c-b307b6360204 a37a6c7948ce33d42067a3c5e8c0d883 hg19 Blood Derived Normal C3N-04445-31 +C3N-04445.WGS.T C3N-04445 LSCC WGS tumor CPT0332520007 CPT0332520007.WholeGenome.RP-2158.bam 24290785613 BAM NA be2e7d9f-666e-440a-a149-803b96dddea3 8e8b53714a0be8143ce55baf1c8589af hg19 Primary Tumor C3N-04445-01,C3N-04445-02 C3N-04445.WXS.A C3N-04445 LSCC WXS tissue_normal CPT0332540006 CPT0332540006.WholeExome.RP-1303.bam 24171857056 BAM NA a1158d75-1498-4464-a73d-2a70122effce 2ab357d0e2caa3ddeb9411059796be00 hg19 Solid Tissue Normal C3N-04445-03 C3N-04445.WXS.N C3N-04445 LSCC WXS blood_normal CPT0332610002 CPT0332610002.WholeExome.RP-1303.bam 20906100037 BAM NA 07a9d01a-0596-43cd-8e67-ce8e2e556c82 c2deb0e28245b29da4aea93ba4c8ee24 hg19 Blood Derived Normal C3N-04445-31 C3N-04445.WXS.T C3N-04445 LSCC WXS tumor CPT0332520007 CPT0332520007.WholeExome.RP-1303.bam 23009029138 BAM NA 0fcec14e-e542-4457-a293-c1362302aef5 bd0a42d6b1fd1615e10ce189f411e855 hg19 Primary Tumor C3N-04445-01,C3N-04445-02 @@ -34018,6 +34038,8 @@ C3N-04449.RNA-Seq.R1.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103 C3N-04449.RNA-Seq.R1.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R1_001.fastq.gz 3838291981 FASTQ NA c10721f5-e95f-40de-8b5d-908d955cead2 4fb04572c6568299728933bdf9eea9fd NA Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.RNA-Seq.R2.A C3N-04449 LSCC RNA-Seq tissue_normal CPT0332740009 201103_UNC31-K00269_0292_AHJ772BBXY_CGTTAGAA-TTCAGGTC_S9_L003_R2_001.fastq.gz 4910314542 FASTQ NA b04a1909-634a-4fce-8ed4-9224e26ccbda f4da99cbea5205f9f854f342319c4487 NA Solid Tissue Normal C3N-04449-03 C3N-04449.RNA-Seq.R2.T C3N-04449 LSCC RNA-Seq tumor CPT0332720010 201103_UNC31-K00269_0292_AHJ772BBXY_ATGTAAGT-ACTCTATG_S21_L006_R2_001.fastq.gz 4245083460 FASTQ NA 1c1d820c-2e0a-449d-8d17-d6c10f2f732b 41be9a98fed6d4fdb7f44a3fed019329 NA Primary Tumor C3N-04449-01,C3N-04449-02 +C3N-04449.WGS.N C3N-04449 LSCC WGS blood_normal CPT0332810002 CPT0332810002.WholeGenome.RP-2158.bam 30070111755 BAM NA ce8a6ac8-7c3f-454e-848e-326805f4d3ee ecdba8c3304b730fea4e2c8f4f5a659c hg19 Blood Derived Normal C3N-04449-31 +C3N-04449.WGS.T C3N-04449 LSCC WGS tumor CPT0332720007 CPT0332720007.WholeGenome.RP-2158.bam 25102344713 BAM NA f8ac2ef3-76ea-4c5b-9a94-6cb3fed3911d ade87a169eb9b5d4b732d42a70ff284e hg19 Primary Tumor C3N-04449-01,C3N-04449-02 C3N-04449.WXS.A C3N-04449 LSCC WXS tissue_normal CPT0332740006 CPT0332740006.WholeExome.RP-1303.bam 36413072593 BAM NA 37217e58-6f6e-41b0-bf22-e64d15a5dda7 bdb5ceb6cce98eedd9396e01e757c241 hg19 Solid Tissue Normal C3N-04449-03 C3N-04449.WXS.N C3N-04449 LSCC WXS blood_normal CPT0332810002 CPT0332810002.WholeExome.RP-1303.bam 25275331083 BAM NA d330fc75-e016-4ed1-95fa-9594f1facfae 2e36f0c92c7a523d198263265b834fdc hg19 Blood Derived Normal C3N-04449-31 C3N-04449.WXS.T C3N-04449 LSCC WXS tumor CPT0332720007 CPT0332720007.WholeExome.RP-1303.bam 26830898453 BAM NA 3c5e6c14-4d8b-4cc1-8a22-b4ef004a97ac 4e1617236ab21a649030c2edfd4b7c5a hg19 Primary Tumor C3N-04449-01,C3N-04449-02 @@ -34111,6 +34133,8 @@ C3N-04660.RNA-Seq.R1.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103 C3N-04660.RNA-Seq.R1.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R1_001.fastq.gz 3491128050 FASTQ NA f040cd6f-bca4-4219-90ce-79bb548ff258 95c536a656e0f8bc39014ff12a0ab182 NA Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.RNA-Seq.R2.A C3N-04660 LSCC RNA-Seq tissue_normal CPT0333140006 201103_UNC31-K00269_0292_AHJ772BBXY_AGCCTCAT-AGTAGAGA_S5_L002_R2_001.fastq.gz 4232579809 FASTQ NA d1ebe51b-7462-45de-af90-e037d6289775 df00fdd9d9a6ca33f8f1dfd90aa9aac9 NA Solid Tissue Normal C3N-04660-03 C3N-04660.RNA-Seq.R2.T C3N-04660 LSCC RNA-Seq tumor CPT0333120010 201103_UNC31-K00269_0292_AHJ772BBXY_GCACGGAC-GTCTCGCA_S23_L006_R2_001.fastq.gz 3876810533 FASTQ NA 1ffd9fe7-3bef-45ce-a22d-76d05d3429a6 d29a67badd82392e680792d342f91748 NA Primary Tumor C3N-04660-01,C3N-04660-02 +C3N-04660.WGS.N C3N-04660 LSCC WGS blood_normal CPT0333210002 CPT0333210002.WholeGenome.RP-2158.bam 23692882633 BAM NA 702de41c-f45c-4111-bad1-03264dd01574 e0dce14acb2ece32b622500e04cfd275 hg19 Blood Derived Normal C3N-04660-31 +C3N-04660.WGS.T C3N-04660 LSCC WGS tumor CPT0333120007 CPT0333120007.WholeGenome.RP-2158.bam 24834974591 BAM NA a8ef9313-a212-407a-a2a4-ef6d38afbda3 fda47cdece3bca876455334e8a35083e hg19 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04660.WXS.N C3N-04660 LSCC WXS blood_normal CPT0333210002 CPT0333210002.WholeExome.RP-1303.bam 25664685884 BAM NA d3ec620f-eb84-4885-98fc-935460498cff af4e1c223334c6497109b934e3fc6bf3 hg19 Blood Derived Normal C3N-04660-31 C3N-04660.WXS.T C3N-04660 LSCC WXS tumor CPT0333120007 CPT0333120007.WholeExome.RP-1303.bam 38570652273 BAM NA e5fb9fac-cb74-46c0-b33f-c532c79635d0 944587b3b5e90a10f1777583d075c726 hg19 Primary Tumor C3N-04660-01,C3N-04660-02 C3N-04662.miRNA-Seq.A C3N-04662 LSCC miRNA-Seq tissue_normal CPT0333340009 201209_UNC32-K00270_0265_AHJ55WBBXY_TATAAT_S17_L006_R1_001.unaln.bam 347846414 BAM NA 8bc072f2-b507-4b35-8c52-1d329d6cac8b a570b39431a5e2cd7e688b02796d9aa3 NA Solid Tissue Normal C3N-04662-03 @@ -34119,6 +34143,8 @@ C3N-04662.RNA-Seq.R1.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103 C3N-04662.RNA-Seq.R1.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R1_001.fastq.gz 4078146955 FASTQ NA b0910594-ba39-4b73-9c92-87889032b3df 9f0a777b86beabfc81b55a2b5b15f100 NA Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.RNA-Seq.R2.A C3N-04662 LSCC RNA-Seq tissue_normal CPT0333340009 201103_UNC31-K00269_0292_AHJ772BBXY_GATTCTGC-GACGAGAG_S7_L002_R2_001.fastq.gz 3225243949 FASTQ NA cf2fb946-7a89-4be7-bcf1-3dbefd88c208 37822a8be538071c3dc8c4047ae26f6f NA Solid Tissue Normal C3N-04662-03 C3N-04662.RNA-Seq.R2.T C3N-04662 LSCC RNA-Seq tumor CPT0333320010 201103_UNC31-K00269_0292_AHJ772BBXY_GGTACCTT-AAGACGTC_S20_L005_R2_001.fastq.gz 4470105933 FASTQ NA 18d596f5-5d39-4ae3-9538-45967468203f 0c32737f44323b86dceffff3efbdbf54 NA Primary Tumor C3N-04662-01,C3N-04662-02 +C3N-04662.WGS.N C3N-04662 LSCC WGS blood_normal CPT0333410002 CPT0333410002.WholeGenome.RP-2158.bam 26911219456 BAM NA 54e8f619-de40-4efc-95bb-9de7a2f02084 311500a9c6cb2c7bc448d0603c361e47 hg19 Blood Derived Normal C3N-04662-31 +C3N-04662.WGS.T C3N-04662 LSCC WGS tumor CPT0333320007 CPT0333320007.WholeGenome.RP-2158.bam 26925350380 BAM NA 7293efa6-b4c4-4660-a400-79126a9f9892 f3cd1fe56e4224dc173f2d364e5b373f hg19 Primary Tumor C3N-04662-01,C3N-04662-02 C3N-04662.WXS.A C3N-04662 LSCC WXS tissue_normal CPT0333340006 CPT0333340006.WholeExome.RP-1303.bam 20135077034 BAM NA 64f68efa-1415-4a46-8409-7317be80478f 59b80255abd1ab699b9318b370323755 hg19 Solid Tissue Normal C3N-04662-03 C3N-04662.WXS.N C3N-04662 LSCC WXS blood_normal CPT0333410002 CPT0333410002.WholeExome.RP-1303.bam 23127820874 BAM NA 52c70757-e0fc-4d66-a16b-d2e343deeabe 786bb743583f6df5f826a6d80486a15e hg19 Blood Derived Normal C3N-04662-31 C3N-04662.WXS.T C3N-04662 LSCC WXS tumor CPT0333320007 CPT0333320007.WholeExome.RP-1303.bam 21841404950 BAM NA eeeb20d0-fdb0-41bc-81e1-578860b3547d e1d78889e876ac79d28ba47f70b4582a hg19 Primary Tumor C3N-04662-01,C3N-04662-02 @@ -34128,6 +34154,8 @@ C3N-04665.RNA-Seq.R1.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103 C3N-04665.RNA-Seq.R1.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R1_001.fastq.gz 3282015159 FASTQ NA 81481aff-e1d8-45ab-8755-17a61ff5915c 1cf9728e014a5efe458e0094a9e0325f NA Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.RNA-Seq.R2.A C3N-04665 LSCC RNA-Seq tissue_normal CPT0333540009 201103_UNC31-K00269_0292_AHJ772BBXY_TCGTAGTG-AGACTTGG_S8_L002_R2_001.fastq.gz 4142893674 FASTQ NA f2a6a325-7b60-442e-8b7c-397a990da879 1ab9dc07bb33783a726d1db8ba9f8450 NA Solid Tissue Normal C3N-04665-03 C3N-04665.RNA-Seq.R2.T C3N-04665 LSCC RNA-Seq tumor CPT0333520010 201103_UNC31-K00269_0292_AHJ772BBXY_AACGTTCC-GGAGTACT_S1_L001_R2_001.fastq.gz 3724470408 FASTQ NA a2b99b44-8278-422c-addc-0cbab637d56d 28a78fa66492a53a138f310ef7a03685 NA Primary Tumor C3N-04665-01,C3N-04665-02 +C3N-04665.WGS.N C3N-04665 LSCC WGS blood_normal CPT0333610002 CPT0333610002.WholeGenome.RP-2158.bam 25078124633 BAM NA 7820c333-a662-4225-82e4-4b2e5df506bc 6b07674da95dc32561c228bb6cc0f8f8 hg19 Blood Derived Normal C3N-04665-31 +C3N-04665.WGS.T C3N-04665 LSCC WGS tumor CPT0333520007 CPT0333520007.WholeGenome.RP-2158.bam 25184916025 BAM NA 4792ea11-97a4-4ec9-a4eb-4d9ff70d9070 b00ce85e4028eee427dd042e1cf1378c hg19 Primary Tumor C3N-04665-01,C3N-04665-02 C3N-04665.WXS.A C3N-04665 LSCC WXS tissue_normal CPT0333540006 CPT0333540006.WholeExome.RP-1303.bam 26094518596 BAM NA 3159bf0c-cd3d-47e3-847d-350b790751e0 9a5ce87dfbc7a7950249f0fb9c874475 hg19 Solid Tissue Normal C3N-04665-03 C3N-04665.WXS.N C3N-04665 LSCC WXS blood_normal CPT0333610002 CPT0333610002.WholeExome.RP-1303.bam 27513226676 BAM NA c92328db-2c81-4c74-8eaa-6a5ee2443b7d 961d916b285848a57441287da3942404 hg19 Blood Derived Normal C3N-04665-31 C3N-04665.WXS.T C3N-04665 LSCC WXS tumor CPT0333520007 CPT0333520007.WholeExome.RP-1303.bam 18015736580 BAM NA b4f38e74-c4dd-4fa5-824b-ce01eec3e668 b25f116c86e2b56f069e1563295b1dda hg19 Primary Tumor C3N-04665-01,C3N-04665-02 @@ -34185,6 +34213,8 @@ C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor CPT0293570006 c5c81116-8317-4cbd-89 C3N-04687.miRNA-Seq.T C3N-04687 GBM miRNA-Seq tumor CPT0293640009 201209_UNC32-K00270_0265_AHJ55WBBXY_ACAGTG_S22_L007_R1_001.unaln.bam 208503100 BAM NA 2cf5871c-e227-4a62-a47f-4f7b400d3b9f 2f4d1d2017eb4ebd438b63f8b0ee945d NA Primary Tumor C3N-04687-02 C3N-04687.RNA-Seq.R1.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R1_001.fastq.gz 5821355811 FASTQ NA 5813883a-bd76-4717-b554-85107c414177 42954edf1fc37e2a6a1190c29ca3837d NA Primary Tumor C3N-04687-02 C3N-04687.RNA-Seq.R2.T C3N-04687 GBM RNA-Seq tumor CPT0293640009 201030_UNC32-K00270_0263_AHJ7K3BBXY_AAGTCCAA-TATGAGTA_S5_L002_R2_001.fastq.gz 6394634933 FASTQ NA 88fe2168-5fc0-4f42-87f2-19dceb47c4e3 77cd363131876e03e6634aa1c5909f27 NA Primary Tumor C3N-04687-02 +C3N-04687.WGS.N C3N-04687 GBM WGS blood_normal CPT0293690002 CPT0293690002.WholeGenome.RP-2158.bam 27529329254 BAM NA 5168a4c1-d7bf-4315-9416-7ca03219f455 676212b8c52b9fca93a8b6f6abd90b97 hg19 Blood Derived Normal C3N-04687-31 +C3N-04687.WGS.T C3N-04687 GBM WGS tumor CPT0293640006 CPT0293640006.WholeGenome.RP-2158.bam 24215834475 BAM NA 78c0a239-fa60-437f-9f48-deed8e1bdf75 329a9eaead33c085c72a82db6584a92a hg19 Primary Tumor C3N-04687-02 C3N-04687.WXS.N C3N-04687 GBM WXS blood_normal CPT0293690002 CPT0293690002.WholeExome.RP-1303.bam 25262694720 BAM NA 201962bb-0a08-42ae-bbeb-70d26f8f2168 a0c1563bf195301a45abb81d022b7c02 hg19 Blood Derived Normal C3N-04687-31 C3N-04687.WXS.T C3N-04687 GBM WXS tumor CPT0293640006 CPT0293640006.WholeExome.RP-1303.bam 18900010222 BAM NA 612866d9-7349-4e34-a5df-b9b8974ceba4 f7ebadc8f54cfecfd93a5923b4b351a8 hg19 Primary Tumor C3N-04687-02 C3N-04691.MethArray.Green.T C3N-04691 GBM Methylation Array tumor CPT0293770006 204372030087_R03C01_Grn.idat 13677880 IDAT Green e6ee78a8-883c-4e1e-b06a-fd6adba317a5 c2c7fec8024b412ccdac55b4483d1280 NA Primary Tumor C3N-04691-01 @@ -34224,6 +34254,8 @@ C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor CPT0293800006 27f4dc0c-6231-4650-a0 C3N-04695.miRNA-Seq.T C3N-04695 GBM miRNA-Seq tumor CPT0293870009 201209_UNC32-K00270_0265_AHJ55WBBXY_GCCAAT_S31_L007_R1_001.unaln.bam 254636701 BAM NA 116a4933-a918-4b62-be94-f8dd406d55e0 2bad041d5acecccb2f27be5e41b4b947 NA Primary Tumor C3N-04695-03 C3N-04695.RNA-Seq.R1.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R1_001.fastq.gz 4693950174 FASTQ NA 192aec81-2351-4e27-88b7-36549fbf6d8d 72a7715debc655f045322ddaa760a31c NA Primary Tumor C3N-04695-03 C3N-04695.RNA-Seq.R2.T C3N-04695 GBM RNA-Seq tumor CPT0293870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_ATCCACTG-AGGTGCGT_S6_L002_R2_001.fastq.gz 5315597387 FASTQ NA 37a18500-3aa6-42ad-99ed-e1c041194c48 147f923d871392c37cbf9babe53dbf9f NA Primary Tumor C3N-04695-03 +C3N-04695.WGS.N C3N-04695 GBM WGS blood_normal CPT0293890002 CPT0293890002.WholeGenome.RP-2158.bam 22732109080 BAM NA 6adf632a-fedb-456f-aad9-67b5c4cd8a7a 829513d0bef0cdc6e691e191e7eccb84 hg19 Blood Derived Normal C3N-04695-31 +C3N-04695.WGS.T C3N-04695 GBM WGS tumor CPT0293870006 CPT0293870006.WholeGenome.RP-2158.bam 27471116027 BAM NA 6dd2b329-91e9-4246-ba46-b15996db89b0 0b1fcd14a9a7e467ea2bc27ff06adda0 hg19 Primary Tumor C3N-04695-03 C3N-04695.WXS.N C3N-04695 GBM WXS blood_normal CPT0293890002 CPT0293890002.WholeExome.RP-1303.bam 23131222441 BAM NA af079cca-f58b-42c0-94d4-28e5d16b9a3e a390bf9e8a30b10b5640a39f9f0f1fa3 hg19 Blood Derived Normal C3N-04695-31 C3N-04695.WXS.T C3N-04695 GBM WXS tumor CPT0293870006 CPT0293870006.WholeExome.RP-1303.bam 24573077650 BAM NA b4fb3775-938a-481e-a1f6-8c2fb0ff2226 4fc4b6dfa572c14b7962cca353507bda hg19 Primary Tumor C3N-04695-03 C3N-04701.MethArray.Green.A C3N-04701 LSCC Methylation Array tissue_normal CPT0293910006 204372030071_R04C01_Grn.idat 13677890 IDAT Green 66b97b36-668e-4403-8ee6-536d33bb103e a5217cbd2216c9ca96ec6a77659d953c NA Solid Tissue Normal C3N-04701-09 @@ -34277,6 +34309,8 @@ C3N-04944.RNA-Seq.R1.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103 C3N-04944.RNA-Seq.R1.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R1_001.fastq.gz 4003847490 FASTQ NA ebd08a10-5fbf-4821-8d0e-c4e5579df561 ab5d738f8ab8887cd8d4d8a9a89ae465 NA Primary Tumor C3N-04944-01 C3N-04944.RNA-Seq.R2.A C3N-04944 LSCC RNA-Seq tissue_normal CPT0333940008 201103_UNC31-K00269_0292_AHJ772BBXY_CCGTGAAG-CAGTGGAT_S13_L004_R2_001.fastq.gz 4355974170 FASTQ NA 2e0be108-dd9a-4c54-818c-00de20ce1c66 99954d8bbbff51ddd79111623f26078b NA Solid Tissue Normal C3N-04944-03 C3N-04944.RNA-Seq.R2.T C3N-04944 LSCC RNA-Seq tumor CPT0333920009 201103_UNC31-K00269_0292_AHJ772BBXY_GCAGAATT-ACCGGCCA_S19_L005_R2_001.fastq.gz 4301679556 FASTQ NA 827f415a-03aa-471c-91a4-82c5a6cf0e1d 83c50218676650d521be00e4ea3e5f4f NA Primary Tumor C3N-04944-01 +C3N-04944.WGS.N C3N-04944 LSCC WGS blood_normal CPT0334010002 CPT0334010002.WholeGenome.RP-2158.bam 24693379292 BAM NA 38226f1f-13be-4604-b711-f7a39e5e11c8 8d82d28cc92d6df87c8ef6ed679cd9e2 hg19 Blood Derived Normal C3N-04944-31 +C3N-04944.WGS.T C3N-04944 LSCC WGS tumor CPT0333920006 CPT0333920006.WholeGenome.RP-2158.bam 22296538949 BAM NA fe21c720-f9ff-4562-9481-e327cacccfc5 a7a26d400473ad8051ca557dcb35619e hg19 Primary Tumor C3N-04944-01 C3N-04944.WXS.A C3N-04944 LSCC WXS tissue_normal CPT0333940006 CPT0333940006.WholeExome.RP-1303.bam 16720005498 BAM NA 0ac7b74b-6144-41ac-bd12-4936b3e669e6 4592799b5a75d11a0dc9ae63275e3ca7 hg19 Solid Tissue Normal C3N-04944-03 C3N-04944.WXS.N C3N-04944 LSCC WXS blood_normal CPT0334010002 CPT0334010002.WholeExome.RP-1303.bam 21205430147 BAM NA 177f0369-331b-45c5-9bf1-9b6c219714bd 6ea956c5da2c8cbd5aca8cd84d2e99ba hg19 Blood Derived Normal C3N-04944-31 C3N-04944.WXS.T C3N-04944 LSCC WXS tumor CPT0333920006 CPT0333920006.WholeExome.RP-1303.bam 21515038676 BAM NA 7ea24cb4-0ca1-4c6f-b9d8-35b212c27403 d75db7068d5daf69b00ee98059ecd0f1 hg19 Primary Tumor C3N-04944-01 @@ -34286,12 +34320,16 @@ C3N-04982.RNA-Seq.R1.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103 C3N-04982.RNA-Seq.R1.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R1_001.fastq.gz 3026911232 FASTQ NA 8ca5fa21-48e5-4126-a630-8d5d067831e7 14da63ac1a7f18357d25a1410aaf7d12 NA Primary Tumor C3N-04982-01 C3N-04982.RNA-Seq.R2.A C3N-04982 LSCC RNA-Seq tissue_normal CPT0334340009 201103_UNC31-K00269_0292_AHJ772BBXY_CTACGACA-GAGTCCAA_S6_L002_R2_001.fastq.gz 5297286576 FASTQ NA 9b338fa6-70b4-4384-a81e-302d3d66da03 d2d9b88d8064446462e8166df0fe62b3 NA Solid Tissue Normal C3N-04982-03 C3N-04982.RNA-Seq.R2.T C3N-04982 LSCC RNA-Seq tumor CPT0334320009 201103_UNC31-K00269_0292_AHJ772BBXY_ATGAGGCC-GTTAATTG_S18_L005_R2_001.fastq.gz 3308248274 FASTQ NA 5ad5ffec-1888-46b6-9b5c-c9b84c406aa9 7a3a4e2ea80c5e2f48867a477d8853bc NA Primary Tumor C3N-04982-01 +C3N-04982.WGS.N C3N-04982 LSCC WGS blood_normal CPT0334410002 CPT0334410002.WholeGenome.RP-2158.bam 24182065112 BAM NA 08fa0a40-cbfe-42d6-8b88-e17c4b75d461 f077b3b5231e04b08d449bb798b37058 hg19 Blood Derived Normal C3N-04982-31 +C3N-04982.WGS.T C3N-04982 LSCC WGS tumor CPT0334320006 CPT0334320006.WholeGenome.RP-2158.bam 26185475216 BAM NA b2cc65c4-7c17-43c9-9c61-0f46e6ca171f 2ddf4706a64c57df05eb7c9348ab1050 hg19 Primary Tumor C3N-04982-01 C3N-04982.WXS.A C3N-04982 LSCC WXS tissue_normal CPT0334340006 CPT0334340006.WholeExome.RP-1303.bam 17565628043 BAM NA 3f295d98-dc74-4237-a236-fc4dd6a1c619 8ff98287c0cde79b87f5e63eb3f84bc4 hg19 Solid Tissue Normal C3N-04982-03 C3N-04982.WXS.N C3N-04982 LSCC WXS blood_normal CPT0334410002 CPT0334410002.WholeExome.RP-1303.bam 26479139402 BAM NA 260542e7-bae2-4251-91b2-ad3af9b63445 9c9f2a764c30d838fb5162dc5fd84574 hg19 Blood Derived Normal C3N-04982-31 C3N-04982.WXS.T C3N-04982 LSCC WXS tumor CPT0334320006 CPT0334320006.WholeExome.RP-1303.bam 24071158645 BAM NA 003dbe5b-ccdd-41d0-a4f6-d4aa0749cdc6 25ac1dc10d62ab1f27c5c2f7e31b8080 hg19 Primary Tumor C3N-04982-01 C3N-05039.miRNA-Seq.T C3N-05039 GBM miRNA-Seq tumor CPT0375550010 201209_UNC32-K00270_0265_AHJ55WBBXY_ACTGAT_S1_L006_R1_001.unaln.bam 339916115 BAM NA 216cd2e0-5dd6-45e7-a80b-229e2904b2b5 5e90186684cd07c0f67c25f6e35794a7 NA Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.RNA-Seq.R1.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R1_001.fastq.gz 4115334516 FASTQ NA 6ab25656-a131-45dd-8109-b25ff504557b 217e7c4eb1e1aec3d0823ff9fadd0323 NA Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.RNA-Seq.R2.T C3N-05039 GBM RNA-Seq tumor CPT0375550010 201103_UNC31-K00269_0292_AHJ772BBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4446311730 FASTQ NA 65389fb7-97ce-4735-bc64-6092b9173a2a 21cc7ed3109046088483706b8b9ac3d7 NA Primary Tumor C3N-05039-01,C3N-05039-02 +C3N-05039.WGS.N C3N-05039 GBM WGS blood_normal CPT0375610002 CPT0375610002.WholeGenome.RP-2158.bam 23424241762 BAM NA a018a950-4966-4f64-a4ef-d417ddf5ca0a c74d72c2dccb0f5d16bb3476728303bd hg19 Blood Derived Normal C3N-05039-31 +C3N-05039.WGS.T C3N-05039 GBM WGS tumor CPT0375550007 CPT0375550007.WholeGenome.RP-2158.bam 27433556193 BAM NA 4428d05f-66c0-4500-b0d6-b31bf646ba74 855321130f5c1c0df497900fae841dd0 hg19 Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05039.WXS.N C3N-05039 GBM WXS blood_normal CPT0375610002 CPT0375610002.WholeExome.RP-1303.bam 29288445996 BAM NA 887088a7-de8b-43bc-af96-5ffb1dd72a0d c0e15167765168d0425947c5bd894f42 hg19 Blood Derived Normal C3N-05039-31 C3N-05039.WXS.T C3N-05039 GBM WXS tumor CPT0375550007 CPT0375550007.WholeExome.RP-1303.bam 23372925491 BAM NA 2c3692de-a4a4-42ad-b89b-279b35f07e0f 7bf242a732e39af260b4d1a2e25fbd42 hg19 Primary Tumor C3N-05039-01,C3N-05039-02 C3N-05078.MethArray.Green.T C3N-05078 LSCC Methylation Array tumor CPT0313250006 204372030072_R05C01_Grn.idat 13677880 IDAT Green 0c5941e4-5d8b-4982-8232-976f7da14e88 71b4df69a73b6f9a2a46730bd40bdbbf NA Primary Tumor C3N-05078-01 @@ -34382,11 +34420,15 @@ C3N-05100.WXS.T.hg38 C3N-05100 LSCC WXS tumor CPT0321680006 5ef62f88-5293-4a68-a C3N-05114.miRNA-Seq.T C3N-05114 GBM miRNA-Seq tumor CPT0375840010 201209_UNC32-K00270_0265_AHJ55WBBXY_ATGAGC_S3_L006_R1_001.unaln.bam 238207174 BAM NA b607ed44-4dd4-4dbe-9e3a-6053a2daf518 46edec62acab3aa914eb6356b98a11b0 NA Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.RNA-Seq.R1.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R1_001.fastq.gz 3709732833 FASTQ NA 0a01510e-f773-49bb-b942-ed13ac1e72a2 7ccb79cf4feb43cb7a11de2c17862a64 NA Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.RNA-Seq.R2.T C3N-05114 GBM RNA-Seq tumor CPT0375840010 201103_UNC31-K00269_0292_AHJ772BBXY_GTCGGAGC-GGTTATAA_S15_L004_R2_001.fastq.gz 4060729232 FASTQ NA 23d53980-2023-4c74-bb48-ff2282011226 6809a81e2988793b41f3ec0b1f4cf963 NA Primary Tumor C3N-05114-01,C3N-05114-02 +C3N-05114.WGS.N C3N-05114 GBM WGS blood_normal CPT0375900002 CPT0375900002.WholeGenome.RP-2158.bam 23591039617 BAM NA 38162097-8649-4ff4-b8c4-c53b803608a5 ffaa27d9cfbcf74be380a13bcf015b81 hg19 Blood Derived Normal C3N-05114-31 +C3N-05114.WGS.T C3N-05114 GBM WGS tumor CPT0375840007 CPT0375840007.WholeGenome.RP-2158.bam 29844175746 BAM NA 0d57def0-92d4-4b0f-8e0b-a73387c3674b 38179ed8709560da2a7c0f0b1d4e1139 hg19 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05114.WXS.N C3N-05114 GBM WXS blood_normal CPT0375900002 CPT0375900002.WholeExome.RP-1303.bam 25448556617 BAM NA d2b66007-8e18-4443-b239-99447327d37c f336660243d5a75ff6ca9659c6400561 hg19 Blood Derived Normal C3N-05114-31 C3N-05114.WXS.T C3N-05114 GBM WXS tumor CPT0375840007 CPT0375840007.WholeExome.RP-1303.bam 20791720954 BAM NA aeeef8e6-c57b-4416-ba7a-930e5a820a20 df769d0aea8660c90786828fe21f1b79 hg19 Primary Tumor C3N-05114-01,C3N-05114-02 C3N-05135.miRNA-Seq.T C3N-05135 GBM miRNA-Seq tumor CPT0376380009 201209_UNC32-K00270_0265_AHJ55WBBXY_ATTCCT_S4_L007_R1_001.unaln.bam 212589586 BAM NA 42853fb5-69b7-4547-8a07-662ee45a6ff1 9ec463c4505a174611276ec332863211 NA Primary Tumor C3N-05135-01 C3N-05135.RNA-Seq.R1.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R1_001.fastq.gz 3712731109 FASTQ NA f923cf94-4f61-4f33-8cab-5328f7853280 d2d92fa1c53cb23b60d1b41b5d4dbed5 NA Primary Tumor C3N-05135-01 C3N-05135.RNA-Seq.R2.T C3N-05135 GBM RNA-Seq tumor CPT0376380009 201103_UNC31-K00269_0292_AHJ772BBXY_CTTGGTAT-CCAAGTCC_S14_L004_R2_001.fastq.gz 4163557208 FASTQ NA bba10325-9b48-47e2-8983-b3687f010e06 3466d03aec58e9bb0ce0a17601332f9a NA Primary Tumor C3N-05135-01 +C3N-05135.WGS.N C3N-05135 GBM WGS blood_normal CPT0376440002 CPT0376440002.WholeGenome.RP-2158.bam 23324063857 BAM NA 645e182c-a2ad-4329-8e06-7b7798b1b827 9e38921d6dae8efa715300066372cefb hg19 Blood Derived Normal C3N-05135-31 +C3N-05135.WGS.T C3N-05135 GBM WGS tumor CPT0376380005 CPT0376380005.WholeGenome.RP-2158.bam 26465673099 BAM NA bcb1ec0a-99ac-4ca9-961a-4b5ab271f384 4c2676dd4e90a86bdfd2aba23a19a69a hg19 Primary Tumor C3N-05135-01 C3N-05135.WXS.N C3N-05135 GBM WXS blood_normal CPT0376440002 CPT0376440002.WholeExome.RP-1303.bam 25191303128 BAM NA 1d01b9a3-f8de-43d8-9f28-277c29919db9 97b524051c0866f89b6af69556479a43 hg19 Blood Derived Normal C3N-05135-31 C3N-05135.WXS.T C3N-05135 GBM WXS tumor CPT0376380005 CPT0376380005.WholeExome.RP-1303.bam 23767669742 BAM NA 9ae07a67-852d-4882-bd82-b1567a9d411d f7c5c2da7aa083b3a973b0e96b4111fd hg19 Primary Tumor C3N-05135-01 C3N-05629.MethArray.Green.A C3N-05629 LSCC Methylation Array tissue_normal CPT0321770006 204372030090_R08C01_Grn.idat 13677880 IDAT Green 6b68145b-a296-4fab-8e94-f5f8d325faf7 607b624f10a0e5e83411f04c5aac528c NA Solid Tissue Normal C3N-05629-06 @@ -34423,6 +34465,8 @@ C3N-05911.RNA-Seq.R1.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_ C3N-05911.RNA-Seq.R1.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R1_001.fastq.gz 3359173562 FASTQ NA 55b515c6-94b3-498d-976f-9dc0d115a9d1 ab60cee05725e8724e68252437511497 NA Primary Tumor C3N-05911-02 C3N-05911.RNA-Seq.R2.A C3N-05911 TBD RNA-Seq tissue_normal CPT0321870009 201030_UNC32-K00270_0263_AHJ7K3BBXY_GCTTGTCA-GAACATAC_S7_L002_R2_001.fastq.gz 6015069834 FASTQ NA 5e575152-25ec-41df-b95a-d44c63fb4774 3072700083ecfb0a0039345d0c3ad1b7 NA Solid Tissue Normal C3N-05911-09 C3N-05911.RNA-Seq.R2.T C3N-05911 TBD RNA-Seq tumor CPT0384280009 201103_UNC31-K00269_0292_AHJ772BBXY_CCAAGTCT-AAGGATGA_S4_L001_R2_001.fastq.gz 3854658963 FASTQ NA 7a0defb3-5e5d-44b1-9180-9fef6f7a98a7 8b1429a749546721cfbee833ca1a4d6d NA Primary Tumor C3N-05911-02 +C3N-05911.WGS.N C3N-05911 TBD WGS blood_normal CPT0321900002 CPT0321900002.WholeGenome.RP-2158.bam 25580109842 BAM NA 8add1311-5ba7-4fa2-8591-ef551f8ea960 d061d6989aa02ee2496acc890a65d836 hg19 Blood Derived Normal C3N-05911-31 +C3N-05911.WGS.T C3N-05911 TBD WGS tumor CPT0384280006 CPT0384280006.WholeGenome.RP-2158.bam 23760701955 BAM NA 4b245764-6fae-4ee4-8f8a-5ea6a7da4a7f 6d6be5a3643206b7ea437f2390ebf2d5 hg19 Primary Tumor C3N-05911-02 C3N-05911.WXS.A C3N-05911 TBD WXS tissue_normal CPT0321870006 CPT0321870006.WholeExome.RP-1303.bam 21699064525 BAM NA d32c097e-ef8a-4061-ac06-da419499d068 e2712f3dda8a311665c7793a3a95eb0f hg19 Solid Tissue Normal C3N-05911-09 C3N-05911.WXS.N C3N-05911 TBD WXS blood_normal CPT0321900002 CPT0321900002.WholeExome.RP-1303.bam 24715994767 BAM NA 90062731-21cb-411a-aa06-8d645b53633d 4e4b5bb3703f9326579a013b4dc641a8 hg19 Blood Derived Normal C3N-05911-31 C3N-05911.WXS.T C3N-05911 TBD WXS tumor CPT0384280006 CPT0384280006.WholeExome.RP-1303.bam 31272418772 BAM NA c88fe497-d5ef-4b4a-a28e-52f6e4d6834f d01995d54f1ea43faaaf551c1d0411de hg19 Primary Tumor C3N-05911-02