From ae6c81fa28d59907ff6a051a00e21f138d537cd4 Mon Sep 17 00:00:00 2001 From: "Matthew A. Wyczalkowski" Date: Fri, 7 Jan 2022 13:15:44 -0600 Subject: [PATCH] Adding 136 GBM WXS BAMs per Clara request * 4.12244 Tb in 136 files * Work dir: /home/m.wyczalkowski/Projects/CPTAC3/import/20220105.GBM_WXS_136 --- BamMap/storage1.BamMap.dat | 136 +++++++++++++++++++++++++++++++++++++ 1 file changed, 136 insertions(+) diff --git a/BamMap/storage1.BamMap.dat b/BamMap/storage1.BamMap.dat index 3f08a34..3cbfc88 100644 --- a/BamMap/storage1.BamMap.dat +++ b/BamMap/storage1.BamMap.dat @@ -730,6 +730,8 @@ C3L-01232.RNA-Seq.R1.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-01232.RNA-Seq.R2.T C3L-01232 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/64276f84-695c-4a6a-bde8-0b0378f17656/200212_UNC31-K00269_0265_BHGCWGBBXY_ATGGCATG-AAGGTACC_S16_L005_R2_001.fastq.gz 4101913109 FASTQ NA 64276f84-695c-4a6a-bde8-0b0378f17656 storage1 C3L-01232.WGS.N.hg38 C3L-01232 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7777e0c-2447-4d47-aa47-e65bed9a8e47/54352f31-de32-4a52-b0c0-1ab882496fc3_wgs_gdc_realn.bam 67565943172 BAM hg38 c7777e0c-2447-4d47-aa47-e65bed9a8e47 storage1 C3L-01232.WGS.T.hg38 C3L-01232 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7794e4ec-ebc2-40ca-9e51-a0a869ecc2be/218349a8-16e2-4bcd-9c9a-690bc5152441_wgs_gdc_realn.bam 74541963072 BAM hg38 7794e4ec-ebc2-40ca-9e51-a0a869ecc2be storage1 +C3L-01232.WXS.N.hg38 C3L-01232 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a65f1db8-170a-4ec2-a20b-e6deff964e2c/54352f31-de32-4a52-b0c0-1ab882496fc3_wxs_gdc_realn.bam 45532138913 BAM hg38 a65f1db8-170a-4ec2-a20b-e6deff964e2c storage1 +C3L-01232.WXS.T.hg38 C3L-01232 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6da28b7b-b148-4c49-97ee-d4587b058a46/218349a8-16e2-4bcd-9c9a-690bc5152441_wxs_gdc_realn.bam 32795800931 BAM hg38 6da28b7b-b148-4c49-97ee-d4587b058a46 storage1 C3L-01237.WGS.N.hg38 C3L-01237 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/41d7d80d-8a51-4bd3-a74d-774a81f7d260/ca8c763c-557a-4aa1-a964-de58741b0d53_wgs_gdc_realn.bam 91797654199 BAM hg38 41d7d80d-8a51-4bd3-a74d-774a81f7d260 storage1 C3L-01237.WGS.T.hg38 C3L-01237 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ac05268-23c5-4dd9-933f-37598dccc518/7d484ca5-118e-4823-ab4e-255cac947459_wgs_gdc_realn.bam 109069239559 BAM hg38 4ac05268-23c5-4dd9-933f-37598dccc518 storage1 C3L-01246.WGS.N.hg38 C3L-01246 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2dac5fa1-c56c-4425-ba61-8270014816ca/69f5bb55-732f-438f-bd16-8a465e97d464_gdc_realn.bam 96605874864 BAM hg38 2dac5fa1-c56c-4425-ba61-8270014816ca storage1 @@ -1297,6 +1299,8 @@ C3L-02644.RNA-Seq.R1.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-02644.RNA-Seq.R2.T C3L-02644 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10aec24b-bc0f-4ee3-9179-a94b8da520f4/200204_UNC31-K00269_0263_AHG2CJBBXY_AATCCGGA-CTACAGTT_S8_L002_R2_001.fastq.gz 4274180966 FASTQ NA 10aec24b-bc0f-4ee3-9179-a94b8da520f4 storage1 C3L-02644.WGS.N.hg38 C3L-02644 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45a5b3d6-b371-4bf2-8477-3e06f8b6cb56/6cdbd613-0752-40a2-9347-582356daf34f_wgs_gdc_realn.bam 76860325745 BAM hg38 45a5b3d6-b371-4bf2-8477-3e06f8b6cb56 storage1 C3L-02644.WGS.T.hg38 C3L-02644 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fac8453c-2278-4a7a-8cca-571fb949d33e/46bef5ac-320b-47da-8f0b-ba57db403534_wgs_gdc_realn.bam 83884571975 BAM hg38 fac8453c-2278-4a7a-8cca-571fb949d33e storage1 +C3L-02644.WXS.N.hg38 C3L-02644 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d691a770-edf9-435f-9288-c9139d4c9f4c/6cdbd613-0752-40a2-9347-582356daf34f_wxs_gdc_realn.bam 37600543856 BAM hg38 d691a770-edf9-435f-9288-c9139d4c9f4c storage1 +C3L-02644.WXS.T.hg38 C3L-02644 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e996952c-e610-4e7e-af08-31671e9e9d7b/46bef5ac-320b-47da-8f0b-ba57db403534_wxs_gdc_realn.bam 23551420409 BAM hg38 e996952c-e610-4e7e-af08-31671e9e9d7b storage1 C3L-02646.WGS.N.hg38 C3L-02646 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ab08e047-4767-496d-8028-4150f9381989/a0d0f408-012f-4580-b28d-aaad9ef55a9f_wgs_gdc_realn.bam 84464346595 BAM hg38 ab08e047-4767-496d-8028-4150f9381989 storage1 C3L-02646.WGS.T.hg38 C3L-02646 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59899683-9cfa-4471-aadd-caf311a8d5de/ffb7f59b-2554-45af-a0be-67a3c8c475e0_wgs_gdc_realn.bam 89037066609 BAM hg38 59899683-9cfa-4471-aadd-caf311a8d5de storage1 C3L-02648.WGS.A.hg38 C3L-02648 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bd93be81-4c63-452e-9e39-720e44e4faf6/c2fd39e9-b12b-443e-8791-39c6b0eca5fb_wgs_gdc_realn.bam 84380514202 BAM hg38 bd93be81-4c63-452e-9e39-720e44e4faf6 storage1 @@ -1322,6 +1326,8 @@ C3L-02662.RNA-Seq.R1.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-02662.RNA-Seq.R2.T C3L-02662 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/45e95154-6823-4405-a610-9a42d4bc5f10/200204_UNC31-K00269_0263_AHG2CJBBXY_TTACAGGA-TGACAAGC_S22_L006_R2_001.fastq.gz 3036287263 FASTQ NA 45e95154-6823-4405-a610-9a42d4bc5f10 storage1 C3L-02662.WGS.N.hg38 C3L-02662 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bfb3b98e-daac-48dc-bd69-85c8886a45c5/ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wgs_gdc_realn.bam 81374312262 BAM hg38 bfb3b98e-daac-48dc-bd69-85c8886a45c5 storage1 C3L-02662.WGS.T.hg38 C3L-02662 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3462153-48c2-4ced-9b84-4179b0f08cb3/48a74119-daeb-4577-9c10-649d7d71f72e_wgs_gdc_realn.bam 81794446548 BAM hg38 c3462153-48c2-4ced-9b84-4179b0f08cb3 storage1 +C3L-02662.WXS.N.hg38 C3L-02662 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/483ee610-f803-4aa9-953c-6d1a197e0e8e/ffb389b7-11c3-4f48-acc0-9e3c62e1dbd9_wxs_gdc_realn.bam 43541229598 BAM hg38 483ee610-f803-4aa9-953c-6d1a197e0e8e storage1 +C3L-02662.WXS.T.hg38 C3L-02662 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77333b37-7fa5-4ebf-b262-6d92a3d5aef3/48a74119-daeb-4577-9c10-649d7d71f72e_wxs_gdc_realn.bam 26349424274 BAM hg38 77333b37-7fa5-4ebf-b262-6d92a3d5aef3 storage1 C3L-02665.WGS.A.hg38 C3L-02665 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10c52c5f-9dc1-47bd-9430-abe69e502b17/79331dda-0cea-40c9-b02c-d051078d3f8e_wgs_gdc_realn.bam 103397245521 BAM hg38 10c52c5f-9dc1-47bd-9430-abe69e502b17 storage1 C3L-02665.WGS.N.hg38 C3L-02665 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8276e38-9884-486f-a161-fe9cb40fed6f/0340681b-f04e-4e51-8a70-319412cbe7f4_wgs_gdc_realn.bam 94340005437 BAM hg38 c8276e38-9884-486f-a161-fe9cb40fed6f storage1 C3L-02665.WGS.T.hg38 C3L-02665 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43cd46a6-d168-402e-9ec5-2ae662c2df58/6673be4a-ae2d-48ae-a437-b47350c5a48c_wgs_gdc_realn.bam 84512606625 BAM hg38 43cd46a6-d168-402e-9ec5-2ae662c2df58 storage1 @@ -1500,12 +1506,16 @@ C3L-03372.RNA-Seq.R1.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-03372.RNA-Seq.R2.T C3L-03372 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/650b80e4-de52-493d-98b9-8ba98fbf901b/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCTTAAG-TCGTGACC_S7_L002_R2_001.fastq.gz 3920350038 FASTQ NA 650b80e4-de52-493d-98b9-8ba98fbf901b storage1 C3L-03372.WGS.N.hg38 C3L-03372 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e93293ef-83a7-4e72-8e5d-632a9ae6fb51/69294b54-61df-4d78-a0da-7e5f1420368c_wgs_gdc_realn.bam 90435302917 BAM hg38 e93293ef-83a7-4e72-8e5d-632a9ae6fb51 storage1 C3L-03372.WGS.T.hg38 C3L-03372 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fe1828b-c264-4376-b62e-0625433cb229/0f606cd0-59c7-4da4-be52-58226d2b3cd5_wgs_gdc_realn.bam 62585754770 BAM hg38 4fe1828b-c264-4376-b62e-0625433cb229 storage1 +C3L-03372.WXS.N.hg38 C3L-03372 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/232df735-b856-4f31-840a-0e28d746748a/69294b54-61df-4d78-a0da-7e5f1420368c_wxs_gdc_realn.bam 29617153769 BAM hg38 232df735-b856-4f31-840a-0e28d746748a storage1 +C3L-03372.WXS.T.hg38 C3L-03372 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0dd34017-3bea-4078-bfb6-359d08615f12/0f606cd0-59c7-4da4-be52-58226d2b3cd5_wxs_gdc_realn.bam 29792319485 BAM hg38 0dd34017-3bea-4078-bfb6-359d08615f12 storage1 C3L-03378.WGS.N.hg38 C3L-03378 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ede9f162-9a03-4918-bb53-d4907388860e/d4fd14ea-995a-4030-b224-544874742c47_wgs_gdc_realn.bam 109146266405 BAM hg38 ede9f162-9a03-4918-bb53-d4907388860e storage1 C3L-03378.WGS.T.hg38 C3L-03378 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aecf5b35-4feb-4a29-864d-2eaa7dcf8ca1/3a309e18-6adc-4200-9961-4f696fcb2984_wgs_gdc_realn.bam 99464172070 BAM hg38 aecf5b35-4feb-4a29-864d-2eaa7dcf8ca1 storage1 C3L-03385.RNA-Seq.R1.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R1_001.fastq.gz 3722386896 FASTQ NA fd7264e4-2ec0-41a4-8c9e-9ca41deefdf1 storage1 C3L-03385.RNA-Seq.R2.T C3L-03385 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bad51e82-edda-4dae-9ae2-a378a2c50866/200212_UNC31-K00269_0265_BHGCWGBBXY_GCAATGCA-GGAACGTT_S17_L005_R2_001.fastq.gz 4036563635 FASTQ NA bad51e82-edda-4dae-9ae2-a378a2c50866 storage1 C3L-03385.WGS.N.hg38 C3L-03385 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ddf2838-9c6e-46f8-a6fe-7df5a229e159/f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wgs_gdc_realn.bam 70348014229 BAM hg38 9ddf2838-9c6e-46f8-a6fe-7df5a229e159 storage1 C3L-03385.WGS.T.hg38 C3L-03385 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1247c8ff-9ca8-448b-9a6b-fcf0385dde94/d623559b-eaeb-4754-ad9a-9884f01c60a7_wgs_gdc_realn.bam 68019906430 BAM hg38 1247c8ff-9ca8-448b-9a6b-fcf0385dde94 storage1 +C3L-03385.WXS.N.hg38 C3L-03385 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c5b5aae5-cc1e-4644-87d0-d21324604e2a/f13892e5-c2c7-44c2-84eb-9d1d70cd5508_wxs_gdc_realn.bam 33622502874 BAM hg38 c5b5aae5-cc1e-4644-87d0-d21324604e2a storage1 +C3L-03385.WXS.T.hg38 C3L-03385 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/faa8ff85-2285-4533-9a3c-3e04b16f0a2e/d623559b-eaeb-4754-ad9a-9884f01c60a7_wxs_gdc_realn.bam 26146677855 BAM hg38 faa8ff85-2285-4533-9a3c-3e04b16f0a2e storage1 C3L-03387.RNA-Seq.chimeric.T.hg38 C3L-03387 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1d7e9088-3ed5-474a-ae49-27d2e0103e65/ba588a83-d39f-43c3-bd8a-0688aa076825.rna_seq.chimeric.gdc_realn.bam 43471080 BAM hg38 1d7e9088-3ed5-474a-ae49-27d2e0103e65 storage1 C3L-03387.RNA-Seq.transcriptome.T.hg38 C3L-03387 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b2526ea-8a7c-419a-b83d-59f9e46a1411/ba588a83-d39f-43c3-bd8a-0688aa076825.rna_seq.transcriptome.gdc_realn.bam 8816080949 BAM hg38 1b2526ea-8a7c-419a-b83d-59f9e46a1411 storage1 C3L-03387.WGS.N.hg38 C3L-03387 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765/4a22b011-e87f-4787-95a6-344797bb400c_wgs_gdc_realn.bam 72900382309 BAM hg38 9ff7b3c7-589b-4c8b-b1f1-e24fb1c0a765 storage1 @@ -1608,14 +1618,20 @@ C3L-03728.WGS.N.hg38 C3L-03728 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski C3L-03728.WGS.T.hg38 C3L-03728 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85e6d6ce-fd69-4897-a631-d7ba1c5affd6/269ffccf-de74-4303-8d2f-0b737598d9f9_wgs_gdc_realn.bam 80472595369 BAM hg38 85e6d6ce-fd69-4897-a631-d7ba1c5affd6 storage1 C3L-03733.WGS.N.hg38 C3L-03733 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b5cd4a1-6a8d-4d03-a714-0d819779e047/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wgs_gdc_realn.bam 73835643752 BAM hg38 4b5cd4a1-6a8d-4d03-a714-0d819779e047 storage1 C3L-03733.WGS.T.hg38 C3L-03733 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3670c996-27b9-48ba-ba81-9f8129b1d722/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wgs_gdc_realn.bam 61788693098 BAM hg38 3670c996-27b9-48ba-ba81-9f8129b1d722 storage1 +C3L-03733.WXS.N.hg38 C3L-03733 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/25d1bdb6-0d99-4a7d-92b6-85eef9854759/b5c33706-5e86-42f3-9fd2-ab09c7614d05_wxs_gdc_realn.bam 35376963378 BAM hg38 25d1bdb6-0d99-4a7d-92b6-85eef9854759 storage1 +C3L-03733.WXS.T.hg38 C3L-03733 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33ac154f-1767-4f9b-8075-a12172189894/bfb2401e-4a92-4242-92bb-d01ecb08d14d_wxs_gdc_realn.bam 36743064043 BAM hg38 33ac154f-1767-4f9b-8075-a12172189894 storage1 C3L-03735.RNA-Seq.R1.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R1_001.fastq.gz 4085825069 FASTQ NA fee8bb2a-2dba-4d0a-9e4b-e7ebe60fe998 storage1 C3L-03735.RNA-Seq.R2.T C3L-03735 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0552d99d-65f1-45ec-8a79-41d6de621a90/200218_UNC31-K00269_0266_AHGKHKBBXY_CCGTGAAG-CAGTGGAT_S54_L005_R2_001.fastq.gz 4505460324 FASTQ NA 0552d99d-65f1-45ec-8a79-41d6de621a90 storage1 C3L-03735.WGS.N.hg38 C3L-03735 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12fe818c-9d4e-47ea-b5d5-b697846bbecb/e7d56953-30f9-417c-9e40-1462762bea4f_wgs_gdc_realn.bam 90921510968 BAM hg38 12fe818c-9d4e-47ea-b5d5-b697846bbecb storage1 C3L-03735.WGS.T.hg38 C3L-03735 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2273e09f-c959-4216-b55b-8f39dd971741/8cf70493-a5d8-4a66-af1d-89028cb10621_wgs_gdc_realn.bam 74067454129 BAM hg38 2273e09f-c959-4216-b55b-8f39dd971741 storage1 +C3L-03735.WXS.N.hg38 C3L-03735 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e3e2c432-ec42-4d5c-848b-f53a31f5b494/e7d56953-30f9-417c-9e40-1462762bea4f_wxs_gdc_realn.bam 33186095115 BAM hg38 e3e2c432-ec42-4d5c-848b-f53a31f5b494 storage1 +C3L-03735.WXS.T.hg38 C3L-03735 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b74b0bb2-b174-4779-9e16-0933e2fdbc02/8cf70493-a5d8-4a66-af1d-89028cb10621_wxs_gdc_realn.bam 34460901803 BAM hg38 b74b0bb2-b174-4779-9e16-0933e2fdbc02 storage1 C3L-03740.RNA-Seq.R1.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/545a4b63-a08b-42bf-93f8-6b9faa29e42d/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R1_001.fastq.gz 4101708629 FASTQ NA 545a4b63-a08b-42bf-93f8-6b9faa29e42d storage1 C3L-03740.RNA-Seq.R2.T C3L-03740 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/04802ae4-6a8a-400d-87e5-2822568997c5/200218_UNC31-K00269_0266_AHGKHKBBXY_CAACAATG-CTTCACGG_S65_L008_R2_001.fastq.gz 4490266666 FASTQ NA 04802ae4-6a8a-400d-87e5-2822568997c5 storage1 C3L-03740.WGS.N.hg38 C3L-03740 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/75913059-161e-4163-8bcd-7682c8b705bd/6983e835-2ae6-468a-adac-ec0464461c65_wgs_gdc_realn.bam 64109908623 BAM hg38 75913059-161e-4163-8bcd-7682c8b705bd storage1 C3L-03740.WGS.T.hg38 C3L-03740 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1408af83-c51f-4a85-9ea5-0890c2678fce/5f411427-6a95-49fe-be0c-950f30692337_wgs_gdc_realn.bam 87814571471 BAM hg38 1408af83-c51f-4a85-9ea5-0890c2678fce storage1 +C3L-03740.WXS.N.hg38 C3L-03740 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b3bbcc78-a7c4-4c55-99f3-829d3d394087/6983e835-2ae6-468a-adac-ec0464461c65_wxs_gdc_realn.bam 31150698203 BAM hg38 b3bbcc78-a7c4-4c55-99f3-829d3d394087 storage1 +C3L-03740.WXS.T.hg38 C3L-03740 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/51b302f1-783a-421a-8abb-b6fbc2d8aa0f/5f411427-6a95-49fe-be0c-950f30692337_wxs_gdc_realn.bam 27684153748 BAM hg38 51b302f1-783a-421a-8abb-b6fbc2d8aa0f storage1 C3L-03743.RNA-Seq.genomic.A.hg38 C3L-03743 PDA RNA-Seq tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1da42751-ac08-44d3-be4a-079c3cad256d/2917532a-84e2-478f-8002-2cdc0933731a.rna_seq.genomic.gdc_realn.bam 7946127775 BAM hg38 1da42751-ac08-44d3-be4a-079c3cad256d storage1 C3L-03743.RNA-Seq.genomic.T.hg38 C3L-03743 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9a76c9ea-2bc2-4934-93c5-317308f8fbf6/a6c74427-1eb0-4d26-ae53-0ba9a33e9734.rna_seq.genomic.gdc_realn.bam 8947757265 BAM hg38 9a76c9ea-2bc2-4934-93c5-317308f8fbf6 storage1 C3L-03743.WGS.N.hg38 C3L-03743 PDA WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/49f6ffb6-0d9a-4b2e-8e06-9f60f846a099/a2e55314-1448-495b-837b-af162c8d8a50_wgs_gdc_realn.bam 116705590779 BAM hg38 49f6ffb6-0d9a-4b2e-8e06-9f60f846a099 storage1 @@ -1672,12 +1688,16 @@ C3L-04036.RNA-Seq.R1.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-04036.RNA-Seq.R2.T C3L-04036 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/180a4380-addf-4a1a-98bd-e75a7b5982da/200212_UNC31-K00269_0265_BHGCWGBBXY_GTTCCAAT-AATTCTGC_S18_L005_R2_001.fastq.gz 4686361595 FASTQ NA 180a4380-addf-4a1a-98bd-e75a7b5982da storage1 C3L-04036.WGS.N.hg38 C3L-04036 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5cc05bff-59ba-46d5-a94b-f2ce494057d0/d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wgs_gdc_realn.bam 84600612482 BAM hg38 5cc05bff-59ba-46d5-a94b-f2ce494057d0 storage1 C3L-04036.WGS.T.hg38 C3L-04036 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38dbe442-1dc6-4904-a03f-2d4d7fd6a845/cf7c8668-776a-401c-8507-aeb41e890b44_wgs_gdc_realn.bam 78770530553 BAM hg38 38dbe442-1dc6-4904-a03f-2d4d7fd6a845 storage1 +C3L-04036.WXS.N.hg38 C3L-04036 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/af95917f-66d4-4f45-a029-744682ad5cfd/d5e843de-676d-4f6b-ae84-2dc2e7a6d2f6_wxs_gdc_realn.bam 32993694360 BAM hg38 af95917f-66d4-4f45-a029-744682ad5cfd storage1 +C3L-04036.WXS.T.hg38 C3L-04036 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/494a854e-4132-41ed-a5a9-4ccdeda2fb59/cf7c8668-776a-401c-8507-aeb41e890b44_wxs_gdc_realn.bam 31650565850 BAM hg38 494a854e-4132-41ed-a5a9-4ccdeda2fb59 storage1 C3L-04037.WGS.N.hg38 C3L-04037 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/968471ea-9f9c-41c3-af74-b7bf3b22cd75/4b9d7cb8-05e7-499d-838a-fdf63a4a93ad_wgs_gdc_realn.bam 97452630425 BAM hg38 968471ea-9f9c-41c3-af74-b7bf3b22cd75 storage1 C3L-04037.WGS.T.hg38 C3L-04037 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/50a5c027-3fb0-4ab1-802d-0d0aa8991ee5/2ed956a8-b3a3-41e2-ade8-aff5e3eae792_wgs_gdc_realn.bam 109398264105 BAM hg38 50a5c027-3fb0-4ab1-802d-0d0aa8991ee5 storage1 C3L-04038.RNA-Seq.R1.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4b1047c2-0ebd-425a-bbb5-558034d20ee0/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R1_001.fastq.gz 3057017289 FASTQ NA 4b1047c2-0ebd-425a-bbb5-558034d20ee0 storage1 C3L-04038.RNA-Seq.R2.T C3L-04038 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/432fbf58-dc9c-45c4-aad4-ccb291b8c512/200204_UNC31-K00269_0263_AHG2CJBBXY_CTCTCGTC-TATAACCT_S4_L001_R2_001.fastq.gz 3685939739 FASTQ NA 432fbf58-dc9c-45c4-aad4-ccb291b8c512 storage1 C3L-04038.WGS.N.hg38 C3L-04038 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21d14944-67f4-4d0c-bfd5-ab7986f4c4c5/e5fa0684-79a6-4278-a7cf-29880b9ce537_wgs_gdc_realn.bam 78286150186 BAM hg38 21d14944-67f4-4d0c-bfd5-ab7986f4c4c5 storage1 C3L-04038.WGS.T.hg38 C3L-04038 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5bfea2-570b-4285-85db-df3e57f7fbf6/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wgs_gdc_realn.bam 82873631851 BAM hg38 9b5bfea2-570b-4285-85db-df3e57f7fbf6 storage1 +C3L-04038.WXS.N.hg38 C3L-04038 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d68ef551-045b-4c28-991c-54176b2ef8b2/e5fa0684-79a6-4278-a7cf-29880b9ce537_wxs_gdc_realn.bam 36239960295 BAM hg38 d68ef551-045b-4c28-991c-54176b2ef8b2 storage1 +C3L-04038.WXS.T.hg38 C3L-04038 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/593cbb4d-9753-427f-9bca-da27067a715b/17f5bea2-6f70-4e8a-8c59-da28bbe1ff3f_wxs_gdc_realn.bam 29805069310 BAM hg38 593cbb4d-9753-427f-9bca-da27067a715b storage1 C3L-04040.WGS.N.hg38 C3L-04040 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f/3125ce10-eeb2-4a71-9101-3576d527d1a7_wgs_gdc_realn.bam 110179630465 BAM hg38 5a57d417-33b4-49ee-bdd1-afd8fbbd7f2f storage1 C3L-04040.WGS.T.hg38 C3L-04040 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46922002-23c9-47e7-8119-036e1d14f8e8/f9d4fefb-3a1d-479f-a26f-bec43f5e2afc_wgs_gdc_realn.bam 115023520974 BAM hg38 46922002-23c9-47e7-8119-036e1d14f8e8 storage1 C3L-04071.WGS.N.hg38 C3L-04071 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6072dfd0-63ad-46d4-a039-35a0f851216b/3b62ef18-ab57-4d8f-8ab7-27b852e82e03_wgs_gdc_realn.bam 94307388841 BAM hg38 6072dfd0-63ad-46d4-a039-35a0f851216b storage1 @@ -1698,22 +1718,32 @@ C3L-04081.WXS.N C3L-04081 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Acti C3L-04081.WXS.T C3L-04081 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b3b6248-df80-4767-9b6a-3d11bd2cc5b4/CPT0265510008.WholeExome.RP-1303.bam 27007068396 BAM hg19 2b3b6248-df80-4767-9b6a-3d11bd2cc5b4 storage1 C3L-04082.WGS.N.hg38 C3L-04082 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59832d48-68b8-4628-8d69-7508a94d58a8/bb8cccdb-ed81-4577-985c-bb7a2fa25615_wgs_gdc_realn.bam 67786654929 BAM hg38 59832d48-68b8-4628-8d69-7508a94d58a8 storage1 C3L-04082.WGS.T.hg38 C3L-04082 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80a90602-d5bb-4aa3-bcbf-2911f481b8f3/55106539-3a36-4192-9e5c-0e548beee398_wgs_gdc_realn.bam 88159863449 BAM hg38 80a90602-d5bb-4aa3-bcbf-2911f481b8f3 storage1 +C3L-04082.WXS.N.hg38 C3L-04082 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5d9f84bd-a6e9-4678-99b9-b92e116bd990/bb8cccdb-ed81-4577-985c-bb7a2fa25615_wxs_gdc_realn.bam 33980020985 BAM hg38 5d9f84bd-a6e9-4678-99b9-b92e116bd990 storage1 +C3L-04082.WXS.T.hg38 C3L-04082 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f87237fb-ad70-43ed-af55-79837baed1a4/55106539-3a36-4192-9e5c-0e548beee398_wxs_gdc_realn.bam 26661775311 BAM hg38 f87237fb-ad70-43ed-af55-79837baed1a4 storage1 C3L-04083.RNA-Seq.R1.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5549791b-5875-433f-a85e-980a44bb3310/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R1_001.fastq.gz 3611394680 FASTQ NA 5549791b-5875-433f-a85e-980a44bb3310 storage1 C3L-04083.RNA-Seq.R2.T C3L-04083 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21ee205d-ff01-4791-82f7-e4b0f801a099/200204_UNC31-K00269_0263_AHG2CJBBXY_TTGGACTC-GGAAGCAG_S6_L002_R2_001.fastq.gz 4227666815 FASTQ NA 21ee205d-ff01-4791-82f7-e4b0f801a099 storage1 C3L-04083.WGS.N.hg38 C3L-04083 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f0a473f-e05f-4b30-988f-a4456e458e19/d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wgs_gdc_realn.bam 76815969296 BAM hg38 8f0a473f-e05f-4b30-988f-a4456e458e19 storage1 C3L-04083.WGS.T.hg38 C3L-04083 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a76bbc4e-73d6-452c-8993-b8b3c830587b/c66bf4aa-16ce-43f4-a353-8244577bf31a_wgs_gdc_realn.bam 71762265713 BAM hg38 a76bbc4e-73d6-452c-8993-b8b3c830587b storage1 +C3L-04083.WXS.N.hg38 C3L-04083 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc4f43a8-3da1-4df6-94d3-48d461e679a2/d0ebe943-1e7a-4ad0-9273-5227f54f1cc6_wxs_gdc_realn.bam 29729626446 BAM hg38 cc4f43a8-3da1-4df6-94d3-48d461e679a2 storage1 +C3L-04083.WXS.T.hg38 C3L-04083 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502835bd-e7db-4616-8f28-dca0053b4397/c66bf4aa-16ce-43f4-a353-8244577bf31a_wxs_gdc_realn.bam 28832541743 BAM hg38 502835bd-e7db-4616-8f28-dca0053b4397 storage1 C3L-04084.RNA-Seq.chimeric.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7376c08c-6e29-4f9e-b0d7-3aa83fa02cea/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.chimeric.gdc_realn.bam 121675997 BAM hg38 7376c08c-6e29-4f9e-b0d7-3aa83fa02cea storage1 C3L-04084.RNA-Seq.transcriptome.T.hg38 C3L-04084 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2b716fc6-942b-4460-9222-d3a7bce01d8c/4a44e047-294c-41ac-8fbe-68fef0c3144a.rna_seq.transcriptome.gdc_realn.bam 9104583220 BAM hg38 2b716fc6-942b-4460-9222-d3a7bce01d8c storage1 C3L-04084.WGS.N.hg38 C3L-04084 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b481775-6b55-4ac6-811e-30d61f8628a9/2c910118-4ad0-4114-bd8e-a4454ad1e5d6_wgs_gdc_realn.bam 77845598765 BAM hg38 5b481775-6b55-4ac6-811e-30d61f8628a9 storage1 C3L-04084.WGS.T.hg38 C3L-04084 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b387bac-d0d0-477d-a0d2-b93d22100e1a/a47119eb-35fd-4fd3-9278-cbdb7d6c8d60_wgs_gdc_realn.bam 89876705074 BAM hg38 9b387bac-d0d0-477d-a0d2-b93d22100e1a storage1 C3L-04085.WGS.N.hg38 C3L-04085 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71b6faf7-a10b-4bc5-b997-e075c6806937/a70f4fe0-29b6-40d6-877a-4754cb2270cf_wgs_gdc_realn.bam 68911988155 BAM hg38 71b6faf7-a10b-4bc5-b997-e075c6806937 storage1 C3L-04085.WGS.T.hg38 C3L-04085 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c2f1712-0980-4d6f-9dda-6c10a459d864/c775700c-9771-4aba-ae72-32627a2c70e2_wgs_gdc_realn.bam 67958029587 BAM hg38 7c2f1712-0980-4d6f-9dda-6c10a459d864 storage1 +C3L-04085.WXS.N.hg38 C3L-04085 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2d44c795-adb4-4675-be59-17570b206f0c/a70f4fe0-29b6-40d6-877a-4754cb2270cf_wxs_gdc_realn.bam 30775678379 BAM hg38 2d44c795-adb4-4675-be59-17570b206f0c storage1 +C3L-04085.WXS.T.hg38 C3L-04085 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2d7379c-8a42-42f2-90eb-2121d85516b5/c775700c-9771-4aba-ae72-32627a2c70e2_wxs_gdc_realn.bam 35779081908 BAM hg38 d2d7379c-8a42-42f2-90eb-2121d85516b5 storage1 C3L-04090.WGS.N.hg38 C3L-04090 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b005d5ce-da55-4484-b85f-33250d2f2f93/cd982953-0066-4729-91e5-ccf5800c6287_wgs_gdc_realn.bam 83572926292 BAM hg38 b005d5ce-da55-4484-b85f-33250d2f2f93 storage1 C3L-04090.WGS.T.hg38 C3L-04090 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c3ab0336-b7dc-4739-a99c-faf95f70764c/0dc0882f-2967-4268-afaa-eff7fa83e921_wgs_gdc_realn.bam 92533479255 BAM hg38 c3ab0336-b7dc-4739-a99c-faf95f70764c storage1 +C3L-04090.WXS.N.hg38 C3L-04090 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cb068c31-d894-43ba-b308-3b1f97d8c15e/cd982953-0066-4729-91e5-ccf5800c6287_wxs_gdc_realn.bam 34156625605 BAM hg38 cb068c31-d894-43ba-b308-3b1f97d8c15e storage1 +C3L-04090.WXS.T.hg38 C3L-04090 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6b65e8bd-213a-4815-b2cc-ff4733cccf2d/0dc0882f-2967-4268-afaa-eff7fa83e921_wxs_gdc_realn.bam 28215868388 BAM hg38 6b65e8bd-213a-4815-b2cc-ff4733cccf2d storage1 C3L-04213.RNA-Seq.R1.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3a18317d-3520-42dc-8003-f9561853b8dc/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R1_001.fastq.gz 3097091394 FASTQ NA 3a18317d-3520-42dc-8003-f9561853b8dc storage1 C3L-04213.RNA-Seq.R2.T C3L-04213 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fb64ce39-84ad-40df-801d-f1e1146356a0/200204_UNC31-K00269_0263_AHG2CJBBXY_GGCATTCT-CTAGCTTG_S23_L006_R2_001.fastq.gz 3633968119 FASTQ NA fb64ce39-84ad-40df-801d-f1e1146356a0 storage1 C3L-04213.WGS.N.hg38 C3L-04213 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4a20d36-782a-4b14-a985-15b48497ff4e/1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wgs_gdc_realn.bam 79615801627 BAM hg38 e4a20d36-782a-4b14-a985-15b48497ff4e storage1 C3L-04213.WGS.T.hg38 C3L-04213 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb4472a3-b931-436b-a6f2-028f0e236229/c7af6007-1e13-438f-a4fe-d011d96669e3_wgs_gdc_realn.bam 65721149462 BAM hg38 bb4472a3-b931-436b-a6f2-028f0e236229 storage1 +C3L-04213.WXS.N.hg38 C3L-04213 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cc11d4a-5a91-438c-9143-57a046ea5a10/1141b2ba-0792-4d08-b5d4-7ec3fa19216b_wxs_gdc_realn.bam 30102627292 BAM hg38 3cc11d4a-5a91-438c-9143-57a046ea5a10 storage1 +C3L-04213.WXS.T.hg38 C3L-04213 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c9986e7-ede7-4495-974b-2095f534a7f6/c7af6007-1e13-438f-a4fe-d011d96669e3_wxs_gdc_realn.bam 26312189759 BAM hg38 7c9986e7-ede7-4495-974b-2095f534a7f6 storage1 C3L-04216.WGS.N.hg38 C3L-04216 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b20b030c-97f3-4a04-bac4-a3139d0bf489/a2382a43-bed8-4b19-89cd-a00478fe45be_wgs_gdc_realn.bam 88687570987 BAM hg38 b20b030c-97f3-4a04-bac4-a3139d0bf489 storage1 C3L-04216.WGS.T.hg38 C3L-04216 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2fc1dd2f-7571-42ee-820c-68341519e90c/44f13f39-00b5-4c5b-9582-e06616a7f968_wgs_gdc_realn.bam 73775630867 BAM hg38 2fc1dd2f-7571-42ee-820c-68341519e90c storage1 C3L-04336.WGS.N.hg38 C3L-04336 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa673546-1c0d-4508-9ab6-dad3e4b748ae/4878f4fb-bb0d-4f9c-87d6-d6959c0ea731_wgs_gdc_realn.bam 84241551453 BAM hg38 aa673546-1c0d-4508-9ab6-dad3e4b748ae storage1 @@ -1722,18 +1752,24 @@ C3L-04339.RNA-Seq.R1.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-04339.RNA-Seq.R2.T C3L-04339 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ad6b56f-857b-4e87-ba96-77141a60b898/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGAGGCC-GTTAATTG_S16_L004_R2_001.fastq.gz 2964399534 FASTQ NA 1ad6b56f-857b-4e87-ba96-77141a60b898 storage1 C3L-04339.WGS.N.hg38 C3L-04339 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a78992b6-5d44-4e49-ba64-f99c06d9700e/33f46088-32c6-48b4-8a6b-2290453f2095_wgs_gdc_realn.bam 76854036007 BAM hg38 a78992b6-5d44-4e49-ba64-f99c06d9700e storage1 C3L-04339.WGS.T.hg38 C3L-04339 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3dfe2c34-88ce-41e9-b6ab-88aac3b761a2/ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wgs_gdc_realn.bam 80406894411 BAM hg38 3dfe2c34-88ce-41e9-b6ab-88aac3b761a2 storage1 +C3L-04339.WXS.N.hg38 C3L-04339 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/210f66ea-881d-49ae-b32c-3d39ddac7941/33f46088-32c6-48b4-8a6b-2290453f2095_wxs_gdc_realn.bam 28408035993 BAM hg38 210f66ea-881d-49ae-b32c-3d39ddac7941 storage1 +C3L-04339.WXS.T.hg38 C3L-04339 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d105a1df-c44b-46eb-aba8-6bd7b2a87af5/ed17cbff-3df3-49c3-8e1d-46d2731f57b3_wxs_gdc_realn.bam 32992537997 BAM hg38 d105a1df-c44b-46eb-aba8-6bd7b2a87af5 storage1 C3L-04354.WGS.N.hg38 C3L-04354 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/245df080-9e1b-4323-a775-2f45d179785d/18200700-e8f1-4f3e-a1ab-fd3d5fb89aef_wgs_gdc_realn.bam 104372983227 BAM hg38 245df080-9e1b-4323-a775-2f45d179785d storage1 C3L-04354.WGS.T.hg38 C3L-04354 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2288df6f-b933-4ec3-a47d-72802a81523d/ff57bec1-fdf3-4efe-aaae-81d5f465ea8d_wgs_gdc_realn.bam 120529725476 BAM hg38 2288df6f-b933-4ec3-a47d-72802a81523d storage1 C3L-04359.RNA-Seq.R1.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b42d0852-cae1-4758-a678-bc012f13aea9/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R1_001.fastq.gz 3681317054 FASTQ NA b42d0852-cae1-4758-a678-bc012f13aea9 storage1 C3L-04359.RNA-Seq.R2.T C3L-04359 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88640d20-f2e8-42d8-a9aa-eb03821c31f7/200129_UNC31-K00269_0261_AHG2CLBBXY_GCTTGTCA-GAACATAC_S10_L008_R2_001.fastq.gz 4083506159 FASTQ NA 88640d20-f2e8-42d8-a9aa-eb03821c31f7 storage1 C3L-04359.WGS.N.hg38 C3L-04359 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a64412f1-74c9-486b-98a7-9eba8d21f9fb/d7706205-c0e2-4a84-a0d3-5496598cbf10_wgs_gdc_realn.bam 73863141089 BAM hg38 a64412f1-74c9-486b-98a7-9eba8d21f9fb storage1 C3L-04359.WGS.T.hg38 C3L-04359 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7d2db0a-f513-4241-9a62-c47f70046392/7dbf52e5-6cf7-44bf-b211-2941a5917899_wgs_gdc_realn.bam 70650337535 BAM hg38 d7d2db0a-f513-4241-9a62-c47f70046392 storage1 +C3L-04359.WXS.N.hg38 C3L-04359 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a9ab409-f15c-49f9-b566-0c21bbedb03d/d7706205-c0e2-4a84-a0d3-5496598cbf10_wxs_gdc_realn.bam 43853685171 BAM hg38 0a9ab409-f15c-49f9-b566-0c21bbedb03d storage1 +C3L-04359.WXS.T.hg38 C3L-04359 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5308095c-11ed-4bf5-a175-0a632a0a250a/7dbf52e5-6cf7-44bf-b211-2941a5917899_wxs_gdc_realn.bam 40884138168 BAM hg38 5308095c-11ed-4bf5-a175-0a632a0a250a storage1 C3L-04361.WGS.N.hg38 C3L-04361 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/62d41a03-8349-40fa-bd86-f48e41d8d9b2/84411001-c027-4951-b815-ff6ed4482914_wgs_gdc_realn.bam 100080652674 BAM hg38 62d41a03-8349-40fa-bd86-f48e41d8d9b2 storage1 C3L-04361.WGS.T.hg38 C3L-04361 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f462f6a-1d87-4669-bd8d-c4a32b90af14/6eb8c4ee-7977-49ea-9e1f-dc640032b670_wgs_gdc_realn.bam 88686010736 BAM hg38 8f462f6a-1d87-4669-bd8d-c4a32b90af14 storage1 C3L-04362.RNA-Seq.R1.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R1_001.fastq.gz 4022817927 FASTQ NA 9be40cc5-bccd-40ec-b730-d1c3ad3e0e6c storage1 C3L-04362.RNA-Seq.R2.T C3L-04362 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/710ec59e-1735-4dd5-ba70-ce35329cac5c/200129_UNC31-K00269_0261_AHG2CLBBXY_CCGCGGTT-AGCGCTAG_S5_L007_R2_001.fastq.gz 4498661993 FASTQ NA 710ec59e-1735-4dd5-ba70-ce35329cac5c storage1 C3L-04362.WGS.N.hg38 C3L-04362 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ac3d361-eef2-4263-85c2-f8748a9379cf/6b29a573-c2f6-4614-9f25-14c918babfa8_wgs_gdc_realn.bam 62812379070 BAM hg38 1ac3d361-eef2-4263-85c2-f8748a9379cf storage1 C3L-04362.WGS.T.hg38 C3L-04362 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dddd8326-8131-4431-8f69-3bb571ce57e9/54bcff95-090d-41c1-92c6-66140f4b3ab9_wgs_gdc_realn.bam 73951272849 BAM hg38 dddd8326-8131-4431-8f69-3bb571ce57e9 storage1 +C3L-04362.WXS.N.hg38 C3L-04362 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39a56545-fb06-4f46-bec5-44025a89bc72/6b29a573-c2f6-4614-9f25-14c918babfa8_wxs_gdc_realn.bam 47074453455 BAM hg38 39a56545-fb06-4f46-bec5-44025a89bc72 storage1 +C3L-04362.WXS.T.hg38 C3L-04362 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9777e76d-b1b6-4f1d-b8d7-592e2e538b4b/54bcff95-090d-41c1-92c6-66140f4b3ab9_wxs_gdc_realn.bam 32536843115 BAM hg38 9777e76d-b1b6-4f1d-b8d7-592e2e538b4b storage1 C3L-04365.WGS.N.hg38 C3L-04365 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a65d2756-edfd-4640-ac1a-10ef43808513/a6021717-cb4d-40c8-b4d9-3b72b8f84ded_wgs_gdc_realn.bam 124296999433 BAM hg38 a65d2756-edfd-4640-ac1a-10ef43808513 storage1 C3L-04365.WGS.T.hg38 C3L-04365 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c8c1e75-8f8f-448f-a584-cd062f4a2f7c/f6d2ef23-6a2c-4925-86bf-6bbe362531cd_wgs_gdc_realn.bam 88704198855 BAM hg38 1c8c1e75-8f8f-448f-a584-cd062f4a2f7c storage1 C3L-04367.WGS.N.hg38 C3L-04367 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a952e3fe-75bd-458c-9bea-ff26afd66c0f/66c866b7-f3dd-4c3f-9317-9d2d37e285ec_wgs_gdc_realn.bam 78025372440 BAM hg38 a952e3fe-75bd-458c-9bea-ff26afd66c0f storage1 @@ -1746,6 +1782,8 @@ C3L-04391.WGS.N.hg38 C3L-04391 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-04391.WGS.T.hg38 C3L-04391 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0693edc4-6418-4abd-a114-d378f88dd700/a52caf88-af54-482a-adcc-5c303877aa1b_wgs_gdc_realn.bam 81007262049 BAM hg38 0693edc4-6418-4abd-a114-d378f88dd700 storage1 C3L-04392.WGS.N.hg38 C3L-04392 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/322aa7fa-fc71-4c68-9bc9-72cc87cfb567/ff58cfa7-a42b-4c49-81b2-a55b9d871181_wgs_gdc_realn.bam 71169654491 BAM hg38 322aa7fa-fc71-4c68-9bc9-72cc87cfb567 storage1 C3L-04392.WGS.T.hg38 C3L-04392 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa97d6a5-ecfe-4536-8f34-dc07208769eb/156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wgs_gdc_realn.bam 78098439529 BAM hg38 aa97d6a5-ecfe-4536-8f34-dc07208769eb storage1 +C3L-04392.WXS.N.hg38 C3L-04392 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ad13323f-754b-4392-8a91-3cc76915b63c/ff58cfa7-a42b-4c49-81b2-a55b9d871181_wxs_gdc_realn.bam 40870259415 BAM hg38 ad13323f-754b-4392-8a91-3cc76915b63c storage1 +C3L-04392.WXS.T.hg38 C3L-04392 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96e5a83a-8889-43f6-abe3-2ce778568d80/156cfa2b-93cb-4a41-b0e7-2cc7896104f0_wxs_gdc_realn.bam 32227999506 BAM hg38 96e5a83a-8889-43f6-abe3-2ce778568d80 storage1 C3L-04402.WGS.N.hg38 C3L-04402 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f8f6dc0-542c-4b18-8264-62c54578599c/4dc3a96a-b762-4a23-b6ba-38791790b86b_wgs_gdc_realn.bam 77030429119 BAM hg38 8f8f6dc0-542c-4b18-8264-62c54578599c storage1 C3L-04402.WGS.T.hg38 C3L-04402 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb602344-26fb-4aa6-a33f-82fd9b19b04f/04193e63-80b9-4eeb-862e-6f78b23a3103_wgs_gdc_realn.bam 56543096092 BAM hg38 eb602344-26fb-4aa6-a33f-82fd9b19b04f storage1 C3L-04404.WGS.N.hg38 C3L-04404 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f31033d4-9f98-4c28-abec-417846bf4ec5/c2b9b16d-31c2-4824-bea8-127c4e3184ad_wgs_gdc_realn.bam 91194189527 BAM hg38 f31033d4-9f98-4c28-abec-417846bf4ec5 storage1 @@ -1773,16 +1811,22 @@ C3L-04537.RNA-Seq.R1.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-04537.RNA-Seq.R2.T C3L-04537 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd035eaf-a77f-4b9b-af7d-f4c0af78fac7/200204_UNC31-K00269_0263_AHG2CJBBXY_CTTGGTAT-CCAAGTCC_S19_L005_R2_001.fastq.gz 4151095210 FASTQ NA cd035eaf-a77f-4b9b-af7d-f4c0af78fac7 storage1 C3L-04537.WGS.N.hg38 C3L-04537 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/90c46761-ce1b-43f8-ae6a-af25020697fe/b2eb19a2-f110-438f-b16c-26dc0f691c14_wgs_gdc_realn.bam 84679557904 BAM hg38 90c46761-ce1b-43f8-ae6a-af25020697fe storage1 C3L-04537.WGS.T.hg38 C3L-04537 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14a5f061-baa1-413d-a21d-4a266877dc04/20533eda-81e3-40c8-842b-40b3e338127c_wgs_gdc_realn.bam 105840080534 BAM hg38 14a5f061-baa1-413d-a21d-4a266877dc04 storage1 +C3L-04537.WXS.N.hg38 C3L-04537 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84320c1f-226b-431c-8240-fe28ad4a4894/b2eb19a2-f110-438f-b16c-26dc0f691c14_wxs_gdc_realn.bam 25476423801 BAM hg38 84320c1f-226b-431c-8240-fe28ad4a4894 storage1 +C3L-04537.WXS.T.hg38 C3L-04537 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d2ea7a2e-737f-4704-8731-492f2cd1c8e9/20533eda-81e3-40c8-842b-40b3e338127c_wxs_gdc_realn.bam 24973995963 BAM hg38 d2ea7a2e-737f-4704-8731-492f2cd1c8e9 storage1 C3L-04539.RNA-Seq.R1.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b56e66a-4850-46ec-b519-5379c91aa066/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R1_001.fastq.gz 3426488460 FASTQ NA 9b56e66a-4850-46ec-b519-5379c91aa066 storage1 C3L-04539.RNA-Seq.R2.T C3L-04539 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5a856d4a-bb70-45dc-af41-53ec656ffc10/200204_UNC31-K00269_0263_AHG2CJBBXY_TCCAACGC-TTGGACTT_S20_L005_R2_001.fastq.gz 4043729957 FASTQ NA 5a856d4a-bb70-45dc-af41-53ec656ffc10 storage1 C3L-04539.WGS.N.hg38 C3L-04539 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/35697bb3-4b0e-498e-86b8-045a3b37c481/56cd7cd6-c6e0-4a44-90df-b10abcd38233_wgs_gdc_realn.bam 106937786996 BAM hg38 35697bb3-4b0e-498e-86b8-045a3b37c481 storage1 C3L-04539.WGS.T.hg38 C3L-04539 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/340ee94a-a5d8-4417-b332-3d171f38544c/db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wgs_gdc_realn.bam 73888912902 BAM hg38 340ee94a-a5d8-4417-b332-3d171f38544c storage1 +C3L-04539.WXS.N.hg38 C3L-04539 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5b6bf6d8-1ba8-40f2-b72c-7209488eb46d/56cd7cd6-c6e0-4a44-90df-b10abcd38233_wxs_gdc_realn.bam 32221310803 BAM hg38 5b6bf6d8-1ba8-40f2-b72c-7209488eb46d storage1 +C3L-04539.WXS.T.hg38 C3L-04539 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44d32def-ea17-4d6a-97a9-4326d8d2d45b/db07518b-9ab5-4e02-b6e1-3eb0c63e8017_wxs_gdc_realn.bam 25583695395 BAM hg38 44d32def-ea17-4d6a-97a9-4326d8d2d45b storage1 C3L-04728.WGS.N.hg38 C3L-04728 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb14feb-df82-4a97-aa74-fd1c460c89c2/89c144d0-e672-49fe-aa42-b3f957230089_wgs_gdc_realn.bam 63433937050 BAM hg38 6fb14feb-df82-4a97-aa74-fd1c460c89c2 storage1 C3L-04728.WGS.T.hg38 C3L-04728 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/28d030b8-d65f-4e55-be7b-cf10aafbd54b/774eea8f-1aca-4b74-b987-b20e71621cda_wgs_gdc_realn.bam 72794626135 BAM hg38 28d030b8-d65f-4e55-be7b-cf10aafbd54b storage1 C3L-04731.RNA-Seq.R1.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fdcc07bb-3566-4ad0-b8af-832168038559/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R1_001.fastq.gz 2915649612 FASTQ NA fdcc07bb-3566-4ad0-b8af-832168038559 storage1 C3L-04731.RNA-Seq.R2.T C3L-04731 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d82e8a6e-aaca-4d9d-b26e-96046b568d10/200204_UNC31-K00269_0263_AHG2CJBBXY_GTCGGAGC-GGTTATAA_S18_L005_R2_001.fastq.gz 3439998432 FASTQ NA d82e8a6e-aaca-4d9d-b26e-96046b568d10 storage1 C3L-04731.WGS.N.hg38 C3L-04731 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d1a5f165-da82-4896-bd87-83d56f133baa/580da526-9175-4120-8b85-febc8c389b31_wgs_gdc_realn.bam 72428099741 BAM hg38 d1a5f165-da82-4896-bd87-83d56f133baa storage1 C3L-04731.WGS.T.hg38 C3L-04731 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/487eb7fd-571b-4593-b357-bbb90037e3c8/b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wgs_gdc_realn.bam 73442457570 BAM hg38 487eb7fd-571b-4593-b357-bbb90037e3c8 storage1 +C3L-04731.WXS.N.hg38 C3L-04731 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1fbd34a9-fc9d-4c2c-ba3b-96ffed456256/580da526-9175-4120-8b85-febc8c389b31_wxs_gdc_realn.bam 48593782996 BAM hg38 1fbd34a9-fc9d-4c2c-ba3b-96ffed456256 storage1 +C3L-04731.WXS.T.hg38 C3L-04731 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b265dc17-8180-4962-8576-87cfde01f80d/b277e95a-5dd6-4438-b9ab-b06f7abbb5ca_wxs_gdc_realn.bam 27379179694 BAM hg38 b265dc17-8180-4962-8576-87cfde01f80d storage1 C3L-04746.WGS.N.hg38 C3L-04746 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0935491d-6a06-4602-977e-871773b588a6/5f8cfa01-07c2-4f48-ab0e-31ff66be67df_wgs_gdc_realn.bam 59978343142 BAM hg38 0935491d-6a06-4602-977e-871773b588a6 storage1 C3L-04746.WGS.T.hg38 C3L-04746 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/801599dd-861c-45b1-8b8a-0796ff39e9a6/7c5f9092-ce2b-4a59-b8ed-f368774e6764_wgs_gdc_realn.bam 69496730556 BAM hg38 801599dd-861c-45b1-8b8a-0796ff39e9a6 storage1 C3L-04749.WGS.N.hg38 C3L-04749 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/948bad93-2b50-452c-bc20-fbaf4d175be2/537b8662-9f16-462d-85f1-2517912d16f0_wgs_gdc_realn.bam 75596498859 BAM hg38 948bad93-2b50-452c-bc20-fbaf4d175be2 storage1 @@ -1801,6 +1845,8 @@ C3L-04795.RNA-Seq.R1.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3L-04795.RNA-Seq.R2.T C3L-04795 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d3c4c707-2ecb-44db-9c2b-04a6f624d67f/200204_UNC31-K00269_0263_AHG2CJBBXY_ACTAAGAT-AACCGCGG_S17_L005_R2_001.fastq.gz 4117685899 FASTQ NA d3c4c707-2ecb-44db-9c2b-04a6f624d67f storage1 C3L-04795.WGS.N.hg38 C3L-04795 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f2cabdf1-f980-49c4-b2bf-e877bcd84a37/66331f85-ba28-4eb8-9df1-60a3cd38d91a_wgs_gdc_realn.bam 59840869093 BAM hg38 f2cabdf1-f980-49c4-b2bf-e877bcd84a37 storage1 C3L-04795.WGS.T.hg38 C3L-04795 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d0d280-5380-4979-84b9-54470cf8aae8/376e0e57-4948-421b-a670-e310f4072910_wgs_gdc_realn.bam 88596718616 BAM hg38 10d0d280-5380-4979-84b9-54470cf8aae8 storage1 +C3L-04795.WXS.N.hg38 C3L-04795 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bba78a37-3fd2-4f10-bd89-b298362fed0e/66331f85-ba28-4eb8-9df1-60a3cd38d91a_wxs_gdc_realn.bam 39013789635 BAM hg38 bba78a37-3fd2-4f10-bd89-b298362fed0e storage1 +C3L-04795.WXS.T.hg38 C3L-04795 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/281e34f3-b97d-4b82-93a2-12421209116a/376e0e57-4948-421b-a670-e310f4072910_wxs_gdc_realn.bam 30536537645 BAM hg38 281e34f3-b97d-4b82-93a2-12421209116a storage1 C3L-04804.WGS.N.hg38 C3L-04804 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39910c35-c8c1-48ac-bace-b2628f125c54/94c1986f-de49-4808-92d5-59f1854e9cab_wgs_gdc_realn.bam 73420136435 BAM hg38 39910c35-c8c1-48ac-bace-b2628f125c54 storage1 C3L-04804.WGS.T.hg38 C3L-04804 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c30c30ef-66ac-4d2c-8328-73abf63e57bd/31f213b0-bb8d-4681-b436-da192eedc9df_wgs_gdc_realn.bam 78966557835 BAM hg38 c30c30ef-66ac-4d2c-8328-73abf63e57bd storage1 C3L-04808.WGS.N.hg38 C3L-04808 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a78e3b98-6eae-4067-858e-c2a3835b7b21/c15ee2a6-727a-430d-b7c0-61dc832d0dc9_wgs_gdc_realn.bam 57262199273 BAM hg38 a78e3b98-6eae-4067-858e-c2a3835b7b21 storage1 @@ -1885,6 +1931,8 @@ C3L-05225.WGS.N.hg38 C3L-05225 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3L-05225.WGS.T.hg38 C3L-05225 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03956b75-1a7a-4dda-aec7-6efa70957bc1/81cdcf02-73f2-42cc-9306-818c9c6869ae_wgs_gdc_realn.bam 72293079183 BAM hg38 03956b75-1a7a-4dda-aec7-6efa70957bc1 storage1 C3L-05239.WGS.N.hg38 C3L-05239 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/74558bd0-2f33-412a-acc6-0274e7abf989/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wgs_gdc_realn.bam 69573503614 BAM hg38 74558bd0-2f33-412a-acc6-0274e7abf989 storage1 C3L-05239.WGS.T.hg38 C3L-05239 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec7424a2-cc70-4745-8abf-830399c53864/7afb0ddf-9395-4033-a349-4d98081ffbe8_wgs_gdc_realn.bam 68789425438 BAM hg38 ec7424a2-cc70-4745-8abf-830399c53864 storage1 +C3L-05239.WXS.N.hg38 C3L-05239 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14ce0eec-58af-472c-bae3-fdc1f9a2d1eb/445cf361-5e12-4f1a-b0ca-23cf5e66a42a_wxs_gdc_realn.bam 25443004274 BAM hg38 14ce0eec-58af-472c-bae3-fdc1f9a2d1eb storage1 +C3L-05239.WXS.T.hg38 C3L-05239 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/73dcd24f-0fde-46b2-a48b-11f402c43c99/7afb0ddf-9395-4033-a349-4d98081ffbe8_wxs_gdc_realn.bam 25755214142 BAM hg38 73dcd24f-0fde-46b2-a48b-11f402c43c99 storage1 C3L-05369.WGS.N.hg38 C3L-05369 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd313034-153a-492c-9e39-5991db231b8b/60330a1e-b890-4080-b328-a426cc600b86_wgs_gdc_realn.bam 74854230798 BAM hg38 fd313034-153a-492c-9e39-5991db231b8b storage1 C3L-05369.WGS.T.hg38 C3L-05369 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a47cd4e-a586-4eb0-a8ce-65488b2b034e/d9f0103e-5df7-4f8e-a564-57886f38b001_wgs_gdc_realn.bam 76677003279 BAM hg38 7a47cd4e-a586-4eb0-a8ce-65488b2b034e storage1 C3L-05392.WGS.N.hg38 C3L-05392 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b5199ab-2746-4ae7-ba6a-aacdf07a0429/74d7b8bf-5f4b-4e3e-841e-5d59c2afba8a_wgs_gdc_realn.bam 73845649668 BAM hg38 1b5199ab-2746-4ae7-ba6a-aacdf07a0429 storage1 @@ -2902,6 +2950,8 @@ C3N-01849.RNA-Seq.R1.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-01849.RNA-Seq.R2.T C3N-01849 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83d649cc-79e9-457a-9e7f-e0fb46c94f8a/200204_UNC31-K00269_0263_AHG2CJBBXY_TAATACAG-ATATTCAC_S9_L003_R2_001.fastq.gz 3845272244 FASTQ NA 83d649cc-79e9-457a-9e7f-e0fb46c94f8a storage1 C3N-01849.WGS.N.hg38 C3N-01849 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20c0f60b-3fab-4d2e-878b-23ad2d24d00a/bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wgs_gdc_realn.bam 78090125732 BAM hg38 20c0f60b-3fab-4d2e-878b-23ad2d24d00a storage1 C3N-01849.WGS.T.hg38 C3N-01849 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73/049c6c50-80e2-46b6-bb4b-951301cf76f1_wgs_gdc_realn.bam 63623607195 BAM hg38 1c6fb1d5-1bef-47ec-88bb-fbb2f185fc73 storage1 +C3N-01849.WXS.N.hg38 C3N-01849 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5f45a87-326b-47a8-b39c-0efb79094bd5/bbc88737-e7c2-404f-a29c-d4eb9ad23e2d_wxs_gdc_realn.bam 38515425322 BAM hg38 f5f45a87-326b-47a8-b39c-0efb79094bd5 storage1 +C3N-01849.WXS.T.hg38 C3N-01849 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/947927ab-08a2-444d-8164-b50ceee502bc/049c6c50-80e2-46b6-bb4b-951301cf76f1_wxs_gdc_realn.bam 24379241229 BAM hg38 947927ab-08a2-444d-8164-b50ceee502bc storage1 C3N-01850.WGS.N.hg38 C3N-01850 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/954ecba0-3516-4e98-b878-ca5f14147164/b0215200-5a5a-4ea7-89c6-09b058ab1ad4_wgs_gdc_realn.bam 94482934419 BAM hg38 954ecba0-3516-4e98-b878-ca5f14147164 storage1 C3N-01850.WGS.T.RDNA_rw5WW4.hg38 C3N-01850 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdfe3ba9-4bbb-4d85-8a69-d912cc4ffa85/437c316c-0135-4d20-98eb-cb6b904b77a8_wgs_gdc_realn.bam 115208540661 BAM hg38 bdfe3ba9-4bbb-4d85-8a69-d912cc4ffa85 storage1 C3N-01851.RNA-Seq.chimeric.T.hg38 C3N-01851 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3d579e90-c8ac-467a-83bd-f9cd11b13f40/e23cf287-1d3b-4f27-86f3-d89dabfe5c10.rna_seq.chimeric.gdc_realn.bam 144581827 BAM hg38 3d579e90-c8ac-467a-83bd-f9cd11b13f40 storage1 @@ -3177,6 +3227,8 @@ C3N-02259.RNA-Seq.R1.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-02259.RNA-Seq.R2.T C3N-02259 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/11e7d48b-1bfe-4892-8eca-6a22a1b8649a/200218_UNC31-K00269_0266_AHGKHKBBXY_AGGCAGAG-AGAATGCC_S67_L008_R2_001.fastq.gz 3988346570 FASTQ NA 11e7d48b-1bfe-4892-8eca-6a22a1b8649a storage1 C3N-02259.WGS.N.hg38 C3N-02259 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bd2584-7377-4a12-b6e7-e6f329974607/6ba5ae6a-aa56-4806-b46b-c46b0169f107_wgs_gdc_realn.bam 65671654026 BAM hg38 80bd2584-7377-4a12-b6e7-e6f329974607 storage1 C3N-02259.WGS.T.hg38 C3N-02259 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ab46c4f-c4af-4fba-aa78-9a124221b6a3/e14a46ba-704d-4e84-876e-46569248569c_wgs_gdc_realn.bam 67217998804 BAM hg38 9ab46c4f-c4af-4fba-aa78-9a124221b6a3 storage1 +C3N-02259.WXS.N.hg38 C3N-02259 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4e909555-b3b3-4165-bfb3-76380c7e964e/6ba5ae6a-aa56-4806-b46b-c46b0169f107_wxs_gdc_realn.bam 30780507901 BAM hg38 4e909555-b3b3-4165-bfb3-76380c7e964e storage1 +C3N-02259.WXS.T.hg38 C3N-02259 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2a83fa0d-8c52-4120-a68e-ed04ee910d99/e14a46ba-704d-4e84-876e-46569248569c_wxs_gdc_realn.bam 33697360977 BAM hg38 2a83fa0d-8c52-4120-a68e-ed04ee910d99 storage1 C3N-02261.WGS.N.hg38 C3N-02261 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/71556c23-559a-4f70-979b-c2144aa2321a/06132899-2648-4344-b26a-61e507aaf27c_wgs_gdc_realn.bam 70371090283 BAM hg38 71556c23-559a-4f70-979b-c2144aa2321a storage1 C3N-02261.WGS.T.hg38 C3N-02261 CCRCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7218687d-4e69-45b8-8a38-08e199c0dd56/435a9d86-5419-4b91-8409-e11bdc8b947d_wgs_gdc_realn.bam 66502869082 BAM hg38 7218687d-4e69-45b8-8a38-08e199c0dd56 storage1 C3N-02262.WGS.N.hg38 C3N-02262 CCRCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5e3c796-78ce-473f-80ec-55314ba17b06/4b1e0be9-79d2-48bd-bb97-e8539f79c106_wgs_gdc_realn.bam 84665084675 BAM hg38 b5e3c796-78ce-473f-80ec-55314ba17b06 storage1 @@ -3212,6 +3264,8 @@ C3N-02286.RNA-Seq.R1.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-02286.RNA-Seq.R2.T C3N-02286 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/80bdd1ba-fe88-4d31-b371-bd54b3859722/200218_UNC31-K00269_0266_AHGKHKBBXY_TGGTGGCA-TCCTGTAA_S66_L008_R2_001.fastq.gz 3994468657 FASTQ NA 80bdd1ba-fe88-4d31-b371-bd54b3859722 storage1 C3N-02286.WGS.N.hg38 C3N-02286 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/049469de-687c-4e38-bddb-a16aabc783b1/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wgs_gdc_realn.bam 77117048003 BAM hg38 049469de-687c-4e38-bddb-a16aabc783b1 storage1 C3N-02286.WGS.T.hg38 C3N-02286 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/513c7439-2b46-4105-ae68-efcee2cdddaf/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wgs_gdc_realn.bam 80364977264 BAM hg38 513c7439-2b46-4105-ae68-efcee2cdddaf storage1 +C3N-02286.WXS.N.hg38 C3N-02286 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c4f55a53-fd44-45ee-906c-dc8706ec87b2/ea28074f-12a6-43b9-adaa-ce7c5cd4902b_wxs_gdc_realn.bam 33503551009 BAM hg38 c4f55a53-fd44-45ee-906c-dc8706ec87b2 storage1 +C3N-02286.WXS.T.hg38 C3N-02286 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ef99148-c0f0-49c4-a112-d11db3c629f6/4c7b90aa-659d-4e89-b2ef-f72998b5a9fc_wxs_gdc_realn.bam 31977769095 BAM hg38 1ef99148-c0f0-49c4-a112-d11db3c629f6 storage1 C3N-02288.WGS.A.hg38 C3N-02288 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/484c7d93-f8f4-40a2-93dd-850690b74dea/77dcf4fd-f121-474e-a7bf-f6b8d238e0f3_wgs_gdc_realn.bam 94654764151 BAM hg38 484c7d93-f8f4-40a2-93dd-850690b74dea storage1 C3N-02288.WGS.N.hg38 C3N-02288 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f257631d-13a7-4807-b1d6-663ef1a49a24/c7123429-3c8d-423a-9a61-67c733b83348_wgs_gdc_realn.bam 87640373571 BAM hg38 f257631d-13a7-4807-b1d6-663ef1a49a24 storage1 C3N-02288.WGS.T.hg38 C3N-02288 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/904e2495-cb20-4d9a-98de-e9d0a82ac17d/7f25c67f-5bde-4d63-908b-8eb7a373a396_wgs_gdc_realn.bam 103111141547 BAM hg38 904e2495-cb20-4d9a-98de-e9d0a82ac17d storage1 @@ -3357,6 +3411,8 @@ C3N-02599.RNA-Seq.R1.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-02599.RNA-Seq.R2.T C3N-02599 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f34ce994-d55e-49cb-bb17-93e3a4874810/200212_UNC31-K00269_0265_BHGCWGBBXY_ACCTTGGC-GGCCTCAT_S19_L005_R2_001.fastq.gz 3639513940 FASTQ NA f34ce994-d55e-49cb-bb17-93e3a4874810 storage1 C3N-02599.WGS.N.hg38 C3N-02599 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/68d465da-3999-4a59-8573-fe84d4170d38/834e776f-c515-46ba-b94e-ae7afe7663ea_wgs_gdc_realn.bam 74853169740 BAM hg38 68d465da-3999-4a59-8573-fe84d4170d38 storage1 C3N-02599.WGS.T.hg38 C3N-02599 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b532f93-73c6-4ace-b9fc-2ac02ba09301/2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wgs_gdc_realn.bam 65754798136 BAM hg38 1b532f93-73c6-4ace-b9fc-2ac02ba09301 storage1 +C3N-02599.WXS.N.hg38 C3N-02599 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5aab09ad-6c94-42a4-bcc2-7ee916573a28/834e776f-c515-46ba-b94e-ae7afe7663ea_wxs_gdc_realn.bam 37230237735 BAM hg38 5aab09ad-6c94-42a4-bcc2-7ee916573a28 storage1 +C3N-02599.WXS.T.hg38 C3N-02599 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d643f49-1997-472d-817d-f06236fda307/2be12cc8-a8a1-4c9f-bca4-ad8bca36aeb6_wxs_gdc_realn.bam 28203970919 BAM hg38 9d643f49-1997-472d-817d-f06236fda307 storage1 C3N-02631.WGS.N.hg38 C3N-02631 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/df09c8cd-57a3-4c2e-9449-4178ea2e0a25/e3f73e35-fe83-48f7-9a6a-2d49f4b46a7d_wgs_gdc_realn.bam 103087909289 BAM hg38 df09c8cd-57a3-4c2e-9449-4178ea2e0a25 storage1 C3N-02631.WGS.T.hg38 C3N-02631 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d3b007-3217-4014-8ad9-bd4d3c8f260d/79b230d0-788f-4ad3-8dce-89039234db0c_wgs_gdc_realn.bam 91406736937 BAM hg38 19d3b007-3217-4014-8ad9-bd4d3c8f260d storage1 C3N-02632.WGS.N.hg38 C3N-02632 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8f290dc8-ddeb-469e-a206-e684a6d46bff/fcc5f63d-4c85-41d0-b104-9d2ea5ba075b_wgs_gdc_realn.bam 81865411035 BAM hg38 8f290dc8-ddeb-469e-a206-e684a6d46bff storage1 @@ -3380,14 +3436,20 @@ C3N-02681.RNA-Seq.R1.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-02681.RNA-Seq.R2.T C3N-02681 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17f81101-60cd-4f3f-905c-776206e75ed1/200204_UNC31-K00269_0263_AHG2CJBBXY_CGGCGTGA-GCGCCTGT_S10_L003_R2_001.fastq.gz 3893705915 FASTQ NA 17f81101-60cd-4f3f-905c-776206e75ed1 storage1 C3N-02681.WGS.N.hg38 C3N-02681 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fc1f6717-d9aa-4711-a859-63dfbebbb225/64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wgs_gdc_realn.bam 87927682035 BAM hg38 fc1f6717-d9aa-4711-a859-63dfbebbb225 storage1 C3N-02681.WGS.T.hg38 C3N-02681 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fd143d44-a8c3-4f15-93c8-df50ef08f406/f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wgs_gdc_realn.bam 62459496300 BAM hg38 fd143d44-a8c3-4f15-93c8-df50ef08f406 storage1 +C3N-02681.WXS.N.hg38 C3N-02681 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1dee4a31-a455-4094-9bca-8c5728420d08/64828d5e-4e40-4ea2-a5ac-8e3c4fd5b345_wxs_gdc_realn.bam 30409997212 BAM hg38 1dee4a31-a455-4094-9bca-8c5728420d08 storage1 +C3N-02681.WXS.T.hg38 C3N-02681 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6ea35233-7d7a-4a6a-ad94-c9be14124207/f5e8abfa-80d2-4a3c-9472-15c2b8d614d3_wxs_gdc_realn.bam 30168751979 BAM hg38 6ea35233-7d7a-4a6a-ad94-c9be14124207 storage1 C3N-02682.RNA-Seq.R1.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bdabb589-3cd2-4b0d-9710-b951fc336806/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R1_001.fastq.gz 3870461768 FASTQ NA bdabb589-3cd2-4b0d-9710-b951fc336806 storage1 C3N-02682.RNA-Seq.R2.T C3N-02682 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c36b01fb-a764-4899-8eaa-7df412ad8c7b/200204_UNC31-K00269_0263_AHG2CJBBXY_ATGTAAGT-ACTCTATG_S11_L003_R2_001.fastq.gz 4641618871 FASTQ NA c36b01fb-a764-4899-8eaa-7df412ad8c7b storage1 C3N-02682.WGS.N.hg38 C3N-02682 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2771f873-7104-4a2f-a186-ee4634ea8b5d/5854cf9a-665a-48c0-a765-43727b62ae6d_wgs_gdc_realn.bam 73004266622 BAM hg38 2771f873-7104-4a2f-a186-ee4634ea8b5d storage1 C3N-02682.WGS.T.hg38 C3N-02682 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b805c3d4-0636-483f-ab8b-747e130cafff/a96f6a16-6c6d-446b-8545-571072fd312a_wgs_gdc_realn.bam 79473733003 BAM hg38 b805c3d4-0636-483f-ab8b-747e130cafff storage1 +C3N-02682.WXS.N.hg38 C3N-02682 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a53e18d-9895-42a2-9ec6-31f7bb5fcb77/5854cf9a-665a-48c0-a765-43727b62ae6d_wxs_gdc_realn.bam 44410389015 BAM hg38 8a53e18d-9895-42a2-9ec6-31f7bb5fcb77 storage1 +C3N-02682.WXS.T.hg38 C3N-02682 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/307e94af-7463-4cec-a9e3-8f89ec1713a2/a96f6a16-6c6d-446b-8545-571072fd312a_wxs_gdc_realn.bam 41646001362 BAM hg38 307e94af-7463-4cec-a9e3-8f89ec1713a2 storage1 C3N-02683.RNA-Seq.R1.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f88b71c6-807d-45d8-bb45-d6f1adb722e4/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R1_001.fastq.gz 4370856638 FASTQ NA f88b71c6-807d-45d8-bb45-d6f1adb722e4 storage1 C3N-02683.RNA-Seq.R2.T C3N-02683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/86f73dc2-f0b2-4857-9873-09673863a96a/200129_UNC31-K00269_0261_AHG2CLBBXY_TTATAACC-GATATCGA_S6_L007_R2_001.fastq.gz 4456238893 FASTQ NA 86f73dc2-f0b2-4857-9873-09673863a96a storage1 C3N-02683.WGS.N.hg38 C3N-02683 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61819705-e22c-4d38-9cac-3d53f1d640fa/63e86eb1-34a0-4930-ab71-1e80bca277ed_wgs_gdc_realn.bam 67714893079 BAM hg38 61819705-e22c-4d38-9cac-3d53f1d640fa storage1 C3N-02683.WGS.T.hg38 C3N-02683 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/126f97d8-c3e5-4676-87e4-f0e71791a784/17fb3ecc-d825-4e43-a854-3494772f2488_wgs_gdc_realn.bam 60609807639 BAM hg38 126f97d8-c3e5-4676-87e4-f0e71791a784 storage1 +C3N-02683.WXS.N.hg38 C3N-02683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d0263ae2-aa97-470b-9b51-bb94d28b6edc/63e86eb1-34a0-4930-ab71-1e80bca277ed_wxs_gdc_realn.bam 24195719764 BAM hg38 d0263ae2-aa97-470b-9b51-bb94d28b6edc storage1 +C3N-02683.WXS.T.hg38 C3N-02683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/69b5d037-e728-49dc-8fa6-ff955e5ace97/17fb3ecc-d825-4e43-a854-3494772f2488_wxs_gdc_realn.bam 27747108695 BAM hg38 69b5d037-e728-49dc-8fa6-ff955e5ace97 storage1 C3N-02684.WXS.A C3N-02684 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d15b182d-611b-41a1-b525-b1debc36c6e4/CPT0404570007.WholeExome.RP-1303.bam 27582047056 BAM hg19 d15b182d-611b-41a1-b525-b1debc36c6e4 storage1 C3N-02684.WXS.N C3N-02684 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/01198a6c-3221-44f0-97b0-2f583b4b1f54/CPT0404640002.WholeExome.RP-1303.bam 29153735919 BAM hg19 01198a6c-3221-44f0-97b0-2f583b4b1f54 storage1 C3N-02688.WGS.N.hg38 C3N-02688 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3874521a-91da-4fe6-aa99-5c5a25f74594/7cd60c64-ed69-43e0-84e6-b067c3a17c7b_wgs_gdc_realn.bam 73583032406 BAM hg38 3874521a-91da-4fe6-aa99-5c5a25f74594 storage1 @@ -3567,10 +3629,14 @@ C3N-03001.RNA-Seq.R1.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03001.RNA-Seq.R2.T C3N-03001 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/634a6d31-e1f2-40a7-b9ee-b14c1965bb5d/200204_UNC31-K00269_0263_AHG2CJBBXY_TCTCTACT-CGCGGTTC_S3_L001_R2_001.fastq.gz 4621533496 FASTQ NA 634a6d31-e1f2-40a7-b9ee-b14c1965bb5d storage1 C3N-03001.WGS.N.hg38 C3N-03001 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d094a1b6-d186-450d-8cd9-4581a517d22b/b1328107-60b3-4caa-9aeb-4a20ff059f1b_wgs_gdc_realn.bam 74657515788 BAM hg38 d094a1b6-d186-450d-8cd9-4581a517d22b storage1 C3N-03001.WGS.T.hg38 C3N-03001 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/08172ae7-bf7e-4d27-bd8e-4154e1445f55/48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wgs_gdc_realn.bam 60902173210 BAM hg38 08172ae7-bf7e-4d27-bd8e-4154e1445f55 storage1 +C3N-03001.WXS.N.hg38 C3N-03001 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e69c87c-2a68-409e-832e-ea3516ed05d0/b1328107-60b3-4caa-9aeb-4a20ff059f1b_wxs_gdc_realn.bam 28582690598 BAM hg38 6e69c87c-2a68-409e-832e-ea3516ed05d0 storage1 +C3N-03001.WXS.T.hg38 C3N-03001 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8e07bc8c-5075-4347-866e-921ec2ff009f/48979019-a7c9-4c9e-8abb-49fd6d26fbcc_wxs_gdc_realn.bam 26465631028 BAM hg38 8e07bc8c-5075-4347-866e-921ec2ff009f storage1 C3N-03003.RNA-Seq.R1.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c465924b-72b1-4df5-858a-bdfdc8c0f484/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R1_001.fastq.gz 3196550993 FASTQ NA c465924b-72b1-4df5-858a-bdfdc8c0f484 storage1 C3N-03003.RNA-Seq.R2.T C3N-03003 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b68baa4c-eac8-4981-8f81-936605755b5d/200204_UNC31-K00269_0263_AHG2CJBBXY_GCACGGAC-GTCTCGCA_S12_L003_R2_001.fastq.gz 3735606264 FASTQ NA b68baa4c-eac8-4981-8f81-936605755b5d storage1 C3N-03003.WGS.N.hg38 C3N-03003 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/daaee450-05a7-4451-a8bc-466d4cc6a324/201dfe54-d739-488d-9e80-1ced195f0d9b_wgs_gdc_realn.bam 66348324743 BAM hg38 daaee450-05a7-4451-a8bc-466d4cc6a324 storage1 C3N-03003.WGS.T.hg38 C3N-03003 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94/0aca7784-683e-4437-b212-755d450109a4_wgs_gdc_realn.bam 59786107963 BAM hg38 1b3e7ab1-5148-4ffa-bc1a-fd0224d0ab94 storage1 +C3N-03003.WXS.N.hg38 C3N-03003 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5df19e6-aad5-4a50-a453-b0d21278ea73/201dfe54-d739-488d-9e80-1ced195f0d9b_wxs_gdc_realn.bam 36035172361 BAM hg38 e5df19e6-aad5-4a50-a453-b0d21278ea73 storage1 +C3N-03003.WXS.T.hg38 C3N-03003 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14918c16-a4fb-48c0-896b-6f09dbdaae00/0aca7784-683e-4437-b212-755d450109a4_wxs_gdc_realn.bam 33401908422 BAM hg38 14918c16-a4fb-48c0-896b-6f09dbdaae00 storage1 C3N-03005.WGS.N.hg38 C3N-03005 UCEC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d727a80b-069b-4e7d-af2e-efc35e450cc5/1ff09d98-fbb1-4c76-a9b2-89d6d6d611db_wgs_gdc_realn.bam 85141307683 BAM hg38 d727a80b-069b-4e7d-af2e-efc35e450cc5 storage1 C3N-03005.WGS.T.hg38 C3N-03005 UCEC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dd0c1b49-1b32-4e7d-94b9-7c4431de5ba9/c2023af5-33df-4fda-9cea-651f670883d1_wgs_gdc_realn.bam 88074413179 BAM hg38 dd0c1b49-1b32-4e7d-94b9-7c4431de5ba9 storage1 C3N-03006.RNA-Seq.genomic.T.hg38 C3N-03006 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a388878-e3c0-4a28-86c3-b990cedd03ee/5ba34fb7-e0ef-4577-92e5-69487d35a5ee.rna_seq.genomic.gdc_realn.bam 9529670763 BAM hg38 6a388878-e3c0-4a28-86c3-b990cedd03ee storage1 @@ -3603,6 +3669,8 @@ C3N-03025.RNA-Seq.R1.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03025.RNA-Seq.R2.T C3N-03025 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7ff9e556-fa20-4d91-8dc9-b02275783e96/200204_UNC31-K00269_0263_AHG2CJBBXY_GGTACCTT-AAGACGTC_S13_L004_R2_001.fastq.gz 3689785219 FASTQ NA 7ff9e556-fa20-4d91-8dc9-b02275783e96 storage1 C3N-03025.WGS.N.hg38 C3N-03025 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/17dc03a1-1c8b-464e-b09e-4c6824d6ae7d/e7c50500-cae7-47da-be3b-86c64714d880_wgs_gdc_realn.bam 76319967086 BAM hg38 17dc03a1-1c8b-464e-b09e-4c6824d6ae7d storage1 C3N-03025.WGS.T.hg38 C3N-03025 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6e5ce309-2ebb-46ee-abf4-570a730bc5b8/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wgs_gdc_realn.bam 82837102023 BAM hg38 6e5ce309-2ebb-46ee-abf4-570a730bc5b8 storage1 +C3N-03025.WXS.N.hg38 C3N-03025 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4/e7c50500-cae7-47da-be3b-86c64714d880_wxs_gdc_realn.bam 35098451486 BAM hg38 e1125a72-80e8-4cc6-aaa2-c4a09b1c8ef4 storage1 +C3N-03025.WXS.T.hg38 C3N-03025 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/325ed822-683e-457a-9687-2ade3fcd0bfe/db572b5f-fd90-4c8b-8609-1e5cd0c44585_wxs_gdc_realn.bam 26254017188 BAM hg38 325ed822-683e-457a-9687-2ade3fcd0bfe storage1 C3N-03026.WXS.A C3N-03026 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ce8bd00b-7413-437c-b0cc-06a5aced75dc/CPT0404650013.WholeExome.RP-1303.bam 30030352752 BAM hg19 ce8bd00b-7413-437c-b0cc-06a5aced75dc storage1 C3N-03026.WXS.N C3N-03026 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bbc8a8e-daa0-4414-afad-656d4b7c1b8a/CPT0404820002.WholeExome.RP-1303.bam 28972194720 BAM hg19 8bbc8a8e-daa0-4414-afad-656d4b7c1b8a storage1 C3N-03027.WGS.N.hg38 C3N-03027 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/61899a8a-9726-4e04-8e6b-0199df765363/39c6f609-8cf9-41db-a099-8959f1dcd941_wgs_gdc_realn.bam 100125629101 BAM hg38 61899a8a-9726-4e04-8e6b-0199df765363 storage1 @@ -3749,20 +3817,28 @@ C3N-03448.RNA-Seq.R1.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03448.RNA-Seq.R2.T C3N-03448 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed68c0c-2d05-45a3-8479-5b09081e06b3/200212_UNC31-K00269_0265_BHGCWGBBXY_GCGCTCTA-GCTCCGAC_S13_L004_R2_001.fastq.gz 3770954643 FASTQ NA 1ed68c0c-2d05-45a3-8479-5b09081e06b3 storage1 C3N-03448.WGS.N.hg38 C3N-03448 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/38086ca8-0290-41a9-8ed4-b7db18d6022f/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wgs_gdc_realn.bam 78736410378 BAM hg38 38086ca8-0290-41a9-8ed4-b7db18d6022f storage1 C3N-03448.WGS.T.hg38 C3N-03448 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b713420f-1781-4045-8984-5ad7e13ee429/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wgs_gdc_realn.bam 81360762813 BAM hg38 b713420f-1781-4045-8984-5ad7e13ee429 storage1 +C3N-03448.WXS.N.hg38 C3N-03448 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5110845-d1e0-40ec-bb1f-4a579825fd3a/cc3fdea7-e732-40b1-a3c8-76a0a704400b_wxs_gdc_realn.bam 36135835999 BAM hg38 d5110845-d1e0-40ec-bb1f-4a579825fd3a storage1 +C3N-03448.WXS.T.hg38 C3N-03448 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbe33cf3-286e-4018-b4a5-0646edd91277/88b92c30-d2a1-4082-8f8a-74b0c810e12c_wxs_gdc_realn.bam 35505337871 BAM hg38 fbe33cf3-286e-4018-b4a5-0646edd91277 storage1 C3N-03449.RNA-Seq.R1.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d8df9e03-10b6-41a3-972f-b6038ca02881/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R1_001.fastq.gz 2970863888 FASTQ NA d8df9e03-10b6-41a3-972f-b6038ca02881 storage1 C3N-03449.RNA-Seq.R2.T C3N-03449 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/289921b1-b467-487e-ad93-095bdb3834ce/200204_UNC31-K00269_0263_AHG2CJBBXY_AACGTTCC-GGAGTACT_S14_L004_R2_001.fastq.gz 3464598047 FASTQ NA 289921b1-b467-487e-ad93-095bdb3834ce storage1 C3N-03449.WGS.N.hg38 C3N-03449 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/12254d50-a4ec-4853-9b55-6e923e7ad99a/42736975-7e8e-49ed-b85f-298eab5e784c_wgs_gdc_realn.bam 63629727764 BAM hg38 12254d50-a4ec-4853-9b55-6e923e7ad99a storage1 C3N-03449.WGS.T.hg38 C3N-03449 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd651894-4cf9-42a1-a907-d8a88f56d660/95344601-8d6d-4b58-b23c-2482f039b375_wgs_gdc_realn.bam 82964057648 BAM hg38 cd651894-4cf9-42a1-a907-d8a88f56d660 storage1 +C3N-03449.WXS.N.hg38 C3N-03449 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e9cc9f57-6994-4632-99c3-b7b44deb2f42/42736975-7e8e-49ed-b85f-298eab5e784c_wxs_gdc_realn.bam 30794323298 BAM hg38 e9cc9f57-6994-4632-99c3-b7b44deb2f42 storage1 +C3N-03449.WXS.T.hg38 C3N-03449 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b2c86b4b-863d-404c-a883-76d1abac071c/95344601-8d6d-4b58-b23c-2482f039b375_wxs_gdc_realn.bam 37857968182 BAM hg38 b2c86b4b-863d-404c-a883-76d1abac071c storage1 C3N-03452.RNA-Seq.R1.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bcb5374d-d91f-4617-9a0b-33efb9238a3f/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R1_001.fastq.gz 4124764165 FASTQ NA bcb5374d-d91f-4617-9a0b-33efb9238a3f storage1 C3N-03452.RNA-Seq.R2.T C3N-03452 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b82dc44-54ea-4dcb-8e7c-5b0167c478f0/200212_UNC31-K00269_0265_BHGCWGBBXY_GGTGAACC-GCGTTGGA_S15_L004_R2_001.fastq.gz 4459558489 FASTQ NA 1b82dc44-54ea-4dcb-8e7c-5b0167c478f0 storage1 C3N-03452.WGS.N.hg38 C3N-03452 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cd7df227-d920-4949-8ab7-191412252216/3d82230b-c081-4c11-9e1f-aed013981520_wgs_gdc_realn.bam 68800975416 BAM hg38 cd7df227-d920-4949-8ab7-191412252216 storage1 C3N-03452.WGS.T.hg38 C3N-03452 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/285e6dc0-38fe-4ca5-a01c-d4ea82565353/c2109dc6-60b3-4bbe-b997-c781791a92c2_wgs_gdc_realn.bam 80891834156 BAM hg38 285e6dc0-38fe-4ca5-a01c-d4ea82565353 storage1 C3N-03452.WXS.A C3N-03452 GBM WXS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/85461ad1-223c-4001-b20f-2e1046f69e0c/CPT0405170007.WholeExome.RP-1303.bam 29785107966 BAM hg19 85461ad1-223c-4001-b20f-2e1046f69e0c storage1 C3N-03452.WXS.N C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/58d9dc12-c34c-4698-b5f3-c3f0feb17aaf/CPT0225980002.WholeExome.RP-1303.bam 22176413678 BAM hg19 58d9dc12-c34c-4698-b5f3-c3f0feb17aaf storage1 +C3N-03452.WXS.N.hg38 C3N-03452 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/72713898-819e-4775-b6e7-8e81a8d14e9e/3d82230b-c081-4c11-9e1f-aed013981520_wxs_gdc_realn.bam 29962435389 BAM hg38 72713898-819e-4775-b6e7-8e81a8d14e9e storage1 +C3N-03452.WXS.T.hg38 C3N-03452 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa9af05c-4ced-4641-9f5d-5b425c0008f2/c2109dc6-60b3-4bbe-b997-c781791a92c2_wxs_gdc_realn.bam 31266490554 BAM hg38 fa9af05c-4ced-4641-9f5d-5b425c0008f2 storage1 C3N-03453.RNA-Seq.R1.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a3a1d4f8-d8b2-4e47-be49-bfd4d235448f/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R1_001.fastq.gz 3276064888 FASTQ NA a3a1d4f8-d8b2-4e47-be49-bfd4d235448f storage1 C3N-03453.RNA-Seq.R2.T C3N-03453 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d643ac36-a2be-46bd-bcf4-eac66dfe9253/200204_UNC31-K00269_0263_AHG2CJBBXY_GCAGAATT-ACCGGCCA_S15_L004_R2_001.fastq.gz 3711563895 FASTQ NA d643ac36-a2be-46bd-bcf4-eac66dfe9253 storage1 C3N-03453.WGS.N.hg38 C3N-03453 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/668c831a-265b-418f-8444-303ea0d612f0/883e62e0-05c1-4b41-9315-d32aa83e8990_wgs_gdc_realn.bam 66079008259 BAM hg38 668c831a-265b-418f-8444-303ea0d612f0 storage1 C3N-03453.WGS.T.hg38 C3N-03453 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3ab79ed1-6153-4d61-82c9-191f5573df89/bce376c8-06f6-4242-a32b-9488f7f4eb82_wgs_gdc_realn.bam 60130960553 BAM hg38 3ab79ed1-6153-4d61-82c9-191f5573df89 storage1 +C3N-03453.WXS.N.hg38 C3N-03453 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fbef702e-4c4b-439b-84df-4f17c09b025d/883e62e0-05c1-4b41-9315-d32aa83e8990_wxs_gdc_realn.bam 35687539170 BAM hg38 fbef702e-4c4b-439b-84df-4f17c09b025d storage1 +C3N-03453.WXS.T.hg38 C3N-03453 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8b4ef77-12ec-4266-a6f6-178327ea0fd0/bce376c8-06f6-4242-a32b-9488f7f4eb82_wxs_gdc_realn.bam 36876819652 BAM hg38 c8b4ef77-12ec-4266-a6f6-178327ea0fd0 storage1 C3N-03456.WGS.N.hg38 C3N-03456 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/447c307a-c8bd-45ef-aaac-b7c10fa8b9e8/055a4b03-332d-40b4-ac7e-eb2e3b16fa1d_wgs_gdc_realn.bam 85813441679 BAM hg38 447c307a-c8bd-45ef-aaac-b7c10fa8b9e8 storage1 C3N-03456.WGS.T.hg38 C3N-03456 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/117f1ac9-604f-4717-801a-ccc39b529b79/62e37b70-37a3-4ffd-a5b7-df6b75dedd16_wgs_gdc_realn.bam 97145742159 BAM hg38 117f1ac9-604f-4717-801a-ccc39b529b79 storage1 C3N-03457.WGS.N.hg38 C3N-03457 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ed44b0b-1953-4fd4-9277-ff6cefa026b6/782f1f40-ac9f-4746-9394-6fbbedbbd497_wgs_gdc_realn.bam 100076827056 BAM hg38 1ed44b0b-1953-4fd4-9277-ff6cefa026b6 storage1 @@ -3777,10 +3853,14 @@ C3N-03480.RNA-Seq.R1.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03480.RNA-Seq.R2.T C3N-03480 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4dc1a8c2-6c07-43e4-9901-b5885da43e33/200204_UNC31-K00269_0263_AHG2CJBBXY_AATGCCTC-TCGATCCA_S24_L006_R2_001.fastq.gz 2906005713 FASTQ NA 4dc1a8c2-6c07-43e4-9901-b5885da43e33 storage1 C3N-03480.WGS.N.hg38 C3N-03480 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2e9debd8-9891-4238-bea9-3329317f7f86/8546651a-1f37-4289-8c55-d588c65768e2_wgs_gdc_realn.bam 69550902854 BAM hg38 2e9debd8-9891-4238-bea9-3329317f7f86 storage1 C3N-03480.WGS.T.hg38 C3N-03480 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed1dba4a-0836-458e-add2-86f0bae54d89/48422358-852c-4656-ae8a-0128e64c2c10_wgs_gdc_realn.bam 70954323517 BAM hg38 ed1dba4a-0836-458e-add2-86f0bae54d89 storage1 +C3N-03480.WXS.N.hg38 C3N-03480 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4fdb16b2-c34d-44b2-a6d9-cd660db8048a/8546651a-1f37-4289-8c55-d588c65768e2_wxs_gdc_realn.bam 42199263487 BAM hg38 4fdb16b2-c34d-44b2-a6d9-cd660db8048a storage1 +C3N-03480.WXS.T.hg38 C3N-03480 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/802cd086-24f7-4a2e-9d26-1b5a574065a2/48422358-852c-4656-ae8a-0128e64c2c10_wxs_gdc_realn.bam 39810831362 BAM hg38 802cd086-24f7-4a2e-9d26-1b5a574065a2 storage1 C3N-03484.RNA-Seq.R1.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/43c7c7da-6399-4ecb-b5e9-7bd1481fd3af/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R1_001.fastq.gz 2974015739 FASTQ NA 43c7c7da-6399-4ecb-b5e9-7bd1481fd3af storage1 C3N-03484.RNA-Seq.R2.T C3N-03484 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f10504f3-e9a4-4e87-9cda-7b7d225d0b17/200204_UNC31-K00269_0263_AHG2CJBBXY_TACCGAGG-CCTGAACT_S25_L007_R2_001.fastq.gz 3472658451 FASTQ NA f10504f3-e9a4-4e87-9cda-7b7d225d0b17 storage1 C3N-03484.WGS.N.hg38 C3N-03484 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b795115-1bc6-4f21-96c6-53a3249ce701/258921c4-2923-423e-baae-2d7c9530872c_wgs_gdc_realn.bam 87200070473 BAM hg38 9b795115-1bc6-4f21-96c6-53a3249ce701 storage1 C3N-03484.WGS.T.hg38 C3N-03484 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e/fc55acf5-fe90-40c2-9d6f-665007d5bf46_wgs_gdc_realn.bam 62228038734 BAM hg38 aa9d8b69-0f53-4ddb-8e1c-8b7e98a4842e storage1 +C3N-03484.WXS.N.hg38 C3N-03484 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fa3081f-5444-4293-a0b7-ec0010a27be4/258921c4-2923-423e-baae-2d7c9530872c_wxs_gdc_realn.bam 32203087130 BAM hg38 0fa3081f-5444-4293-a0b7-ec0010a27be4 storage1 +C3N-03484.WXS.T.hg38 C3N-03484 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc502628-c645-4eaf-94b2-d12c2924ea3b/fc55acf5-fe90-40c2-9d6f-665007d5bf46_wxs_gdc_realn.bam 34008928383 BAM hg38 cc502628-c645-4eaf-94b2-d12c2924ea3b storage1 C3N-03486.WGS.A.hg38 C3N-03486 LSCC WGS tissue_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/10d266c1-aecb-4e51-86fb-87586aa84cad/1813c1d8-24d0-42f9-b1ec-a216c3612018_wgs_gdc_realn.bam 83438404122 BAM hg38 10d266c1-aecb-4e51-86fb-87586aa84cad storage1 C3N-03486.WGS.N.hg38 C3N-03486 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/32d31bb5-6c2c-4744-bac4-14a297cce04b/ee42812c-00ed-48dc-9368-dbaccf74827e_wgs_gdc_realn.bam 127477121903 BAM hg38 32d31bb5-6c2c-4744-bac4-14a297cce04b storage1 C3N-03486.WGS.T.hg38 C3N-03486 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6a31bc2a-344d-4be0-b0d3-76a24d5805d6/20d89cb5-a513-4faa-92f4-cf1f43cbae18_wgs_gdc_realn.bam 118204084087 BAM hg38 6a31bc2a-344d-4be0-b0d3-76a24d5805d6 storage1 @@ -3816,14 +3896,20 @@ C3N-03755.RNA-Seq.R1.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03755.RNA-Seq.R2.T C3N-03755 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/76548cbb-338c-4415-83dd-81b50d9ec658/200129_UNC31-K00269_0261_AHG2CLBBXY_TGGATCGA-GTGCGATA_S12_L008_R2_001.fastq.gz 3855275179 FASTQ NA 76548cbb-338c-4415-83dd-81b50d9ec658 storage1 C3N-03755.WGS.N.hg38 C3N-03755 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6/50fce217-0cc7-4115-8100-8251b2e1dbe8_wgs_gdc_realn.bam 66609631094 BAM hg38 dbdb5f5a-a6ce-4299-9a44-e0ea85c470a6 storage1 C3N-03755.WGS.T.hg38 C3N-03755 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3441fcde-5a81-4c50-8ec0-24c4ec3bb284/b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wgs_gdc_realn.bam 75535747829 BAM hg38 3441fcde-5a81-4c50-8ec0-24c4ec3bb284 storage1 +C3N-03755.WXS.N.hg38 C3N-03755 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/46385935-1b35-415e-86f3-09448db274f3/50fce217-0cc7-4115-8100-8251b2e1dbe8_wxs_gdc_realn.bam 30506791502 BAM hg38 46385935-1b35-415e-86f3-09448db274f3 storage1 +C3N-03755.WXS.T.hg38 C3N-03755 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6a71dfb-c2ed-4488-a1ab-435ed2f4493f/b2f4855a-2a82-45c0-89f6-9132cc61a9a4_wxs_gdc_realn.bam 26137800668 BAM hg38 c6a71dfb-c2ed-4488-a1ab-435ed2f4493f storage1 C3N-03756.RNA-Seq.R1.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R1_001.fastq.gz 3540889062 FASTQ NA e7e4ca7f-fb5c-46cc-808e-d12de9a0bf50 storage1 C3N-03756.RNA-Seq.R2.T C3N-03756 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5a6f477-3888-416d-bbe8-c6110091e40e/200518_UNC32-K00270_0247_AHH573BBXY_AGTTCAGG-CCAACAGA_S26_L003_R2_001.fastq.gz 4271619467 FASTQ NA d5a6f477-3888-416d-bbe8-c6110091e40e storage1 C3N-03756.WGS.N.hg38 C3N-03756 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7091cde-15c0-427a-ab8c-f4260501dd7d/66e454ec-e406-4636-ac39-6f866a915a54_wgs_gdc_realn.bam 62889344302 BAM hg38 e7091cde-15c0-427a-ab8c-f4260501dd7d storage1 C3N-03756.WGS.T.hg38 C3N-03756 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2312a271-58c8-4e5f-a6eb-702e901ea6fc/9ff900ed-184e-485a-a302-8547b3370e49_wgs_gdc_realn.bam 79817657270 BAM hg38 2312a271-58c8-4e5f-a6eb-702e901ea6fc storage1 +C3N-03756.WXS.N.hg38 C3N-03756 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/55625e73-b970-4eed-a670-24a1338b7427/66e454ec-e406-4636-ac39-6f866a915a54_wxs_gdc_realn.bam 24900533593 BAM hg38 55625e73-b970-4eed-a670-24a1338b7427 storage1 +C3N-03756.WXS.T.hg38 C3N-03756 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/19d498ba-9032-44d3-bf45-786ac215e4e1/9ff900ed-184e-485a-a302-8547b3370e49_wxs_gdc_realn.bam 31383324403 BAM hg38 19d498ba-9032-44d3-bf45-786ac215e4e1 storage1 C3N-03757.RNA-Seq.R1.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4a00f13f-802b-479a-9c10-208b3158248a/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R1_001.fastq.gz 5283446961 FASTQ NA 4a00f13f-802b-479a-9c10-208b3158248a storage1 C3N-03757.RNA-Seq.R2.T C3N-03757 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/973c3d9c-0686-4288-a83d-725e7d2d0488/200218_UNC31-K00269_0266_AHGKHKBBXY_CAAGCTAG-ACATAGCG_S59_L006_R2_001.fastq.gz 5903094218 FASTQ NA 973c3d9c-0686-4288-a83d-725e7d2d0488 storage1 C3N-03757.WGS.N.hg38 C3N-03757 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8bbe506e-60c3-4df6-af3d-f7713d49b0dc/8d894511-5d1c-4e1d-9276-2652042bb730_wgs_gdc_realn.bam 74844179183 BAM hg38 8bbe506e-60c3-4df6-af3d-f7713d49b0dc storage1 C3N-03757.WGS.T.hg38 C3N-03757 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b5398b66-5b43-4f83-a30a-21db3a30b5e9/fa002608-faaf-4aa1-8594-0146105e9048_wgs_gdc_realn.bam 63162009480 BAM hg38 b5398b66-5b43-4f83-a30a-21db3a30b5e9 storage1 +C3N-03757.WXS.N.hg38 C3N-03757 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bc78ea1b-1673-4776-a7b8-93d09d7234dd/8d894511-5d1c-4e1d-9276-2652042bb730_wxs_gdc_realn.bam 31169625067 BAM hg38 bc78ea1b-1673-4776-a7b8-93d09d7234dd storage1 +C3N-03757.WXS.T.hg38 C3N-03757 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/21121304-f000-449a-b9b4-898035459432/fa002608-faaf-4aa1-8594-0146105e9048_wxs_gdc_realn.bam 29973231524 BAM hg38 21121304-f000-449a-b9b4-898035459432 storage1 C3N-03762.WGS.N.hg38 C3N-03762 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83a064b6-a934-408d-93ee-ab41545c75c5/f8c7c04c-bf1e-4a8c-9d49-d43de0279a39_wgs_gdc_realn.bam 75682384584 BAM hg38 83a064b6-a934-408d-93ee-ab41545c75c5 storage1 C3N-03762.WGS.T.hg38 C3N-03762 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/959ede3b-d2ab-4799-ad2f-e1e146acf67b/a5fe587b-8a3a-411a-99cd-d07dbade113f_wgs_gdc_realn.bam 68324474453 BAM hg38 959ede3b-d2ab-4799-ad2f-e1e146acf67b storage1 C3N-03764.WGS.N.hg38 C3N-03764 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4334fe61-4e0f-46bb-81ed-f1bf83fba41b/6fd426f8-0858-4065-98e6-df2c1651774b_wgs_gdc_realn.bam 99778126754 BAM hg38 4334fe61-4e0f-46bb-81ed-f1bf83fba41b storage1 @@ -3851,28 +3937,44 @@ C3N-03789.RNA-Seq.R1.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03789.RNA-Seq.R2.T C3N-03789 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0f25e421-ff9d-41ab-bef9-2503901bdb40/200218_UNC31-K00269_0266_AHGKHKBBXY_GGACTTGG-CGCAGACG_S58_L006_R2_001.fastq.gz 4685616893 FASTQ NA 0f25e421-ff9d-41ab-bef9-2503901bdb40 storage1 C3N-03789.WGS.N.hg38 C3N-03789 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c300354a-780b-4904-91d1-54e08b324a01/d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wgs_gdc_realn.bam 100034438784 BAM hg38 c300354a-780b-4904-91d1-54e08b324a01 storage1 C3N-03789.WGS.T.hg38 C3N-03789 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5e036af9-a3a3-48ed-ab3e-5d5406e9b91f/81c4a568-2fb2-44a1-b5cd-0654380d459a_wgs_gdc_realn.bam 62404522107 BAM hg38 5e036af9-a3a3-48ed-ab3e-5d5406e9b91f storage1 +C3N-03789.WXS.N.hg38 C3N-03789 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/502434e4-f053-44d4-b480-d40873a0c659/d3ab454b-9464-48cf-abf5-4c8ab909b5c0_wxs_gdc_realn.bam 34710561156 BAM hg38 502434e4-f053-44d4-b480-d40873a0c659 storage1 +C3N-03789.WXS.T.hg38 C3N-03789 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cfa3caaf-f484-40f9-bd13-3708af6901c4/81c4a568-2fb2-44a1-b5cd-0654380d459a_wxs_gdc_realn.bam 25433729718 BAM hg38 cfa3caaf-f484-40f9-bd13-3708af6901c4 storage1 C3N-03791.RNA-Seq.R1.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/278403a7-7c34-4b9e-97d5-98df7b34b730/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R1_001.fastq.gz 3230332173 FASTQ NA 278403a7-7c34-4b9e-97d5-98df7b34b730 storage1 C3N-03791.RNA-Seq.R2.T C3N-03791 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e0f0a291-d112-4eac-affa-355d24b03424/200204_UNC31-K00269_0263_AHG2CJBBXY_GACCTGAA-TTGGTGAG_S2_L001_R2_001.fastq.gz 3886086941 FASTQ NA e0f0a291-d112-4eac-affa-355d24b03424 storage1 C3N-03791.WGS.N.hg38 C3N-03791 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dbb9edea-f9d6-4add-b71f-a6229f36db20/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wgs_gdc_realn.bam 74021298457 BAM hg38 dbb9edea-f9d6-4add-b71f-a6229f36db20 storage1 C3N-03791.WGS.T.hg38 C3N-03791 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9d67076c-f460-4452-b785-b2aa0e0ae8df/a12853e7-7ad9-40e5-a71a-b50c18db7465_wgs_gdc_realn.bam 64319191270 BAM hg38 9d67076c-f460-4452-b785-b2aa0e0ae8df storage1 +C3N-03791.WXS.N.hg38 C3N-03791 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/16b1732d-19aa-4414-a010-261a7c7295d1/2b68f934-9910-4dc6-adc3-1cf82764a7a0_wxs_gdc_realn.bam 44267823987 BAM hg38 16b1732d-19aa-4414-a010-261a7c7295d1 storage1 +C3N-03791.WXS.T.hg38 C3N-03791 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/93a0f29b-98ed-46e0-8f8b-03e4b9e363db/a12853e7-7ad9-40e5-a71a-b50c18db7465_wxs_gdc_realn.bam 28912229200 BAM hg38 93a0f29b-98ed-46e0-8f8b-03e4b9e363db storage1 C3N-03792.WGS.N.hg38 C3N-03792 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6/3d7cbf18-a043-454f-8905-cd5f885c8585_wgs_gdc_realn.bam 82016915053 BAM hg38 c7cb5bb7-5dfd-4d57-9f74-5b654f69c2e6 storage1 C3N-03792.WGS.T.hg38 C3N-03792 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/589da87e-23f6-4ea0-a617-aca6a439932b/e3217e6c-3148-4949-9082-6a364c7f5166_wgs_gdc_realn.bam 70908445543 BAM hg38 589da87e-23f6-4ea0-a617-aca6a439932b storage1 +C3N-03792.WXS.N.hg38 C3N-03792 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/adfca261-c468-4f30-8049-2aaa440ba357/3d7cbf18-a043-454f-8905-cd5f885c8585_wxs_gdc_realn.bam 31161726626 BAM hg38 adfca261-c468-4f30-8049-2aaa440ba357 storage1 +C3N-03792.WXS.T.hg38 C3N-03792 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dda791c-46ac-47fb-a77d-bd046ba2c254/e3217e6c-3148-4949-9082-6a364c7f5166_wxs_gdc_realn.bam 34687747029 BAM hg38 5dda791c-46ac-47fb-a77d-bd046ba2c254 storage1 C3N-03796.WGS.N.hg38 C3N-03796 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/44090d4f-41a1-4a1c-840a-f1c20832adde/108e1690-f144-4cef-a077-4bf4a30f3205_wgs_gdc_realn.bam 75789850346 BAM hg38 44090d4f-41a1-4a1c-840a-f1c20832adde storage1 C3N-03796.WGS.T.hg38 C3N-03796 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/dab304ed-18fc-4407-b298-b1c9e04fadbf/a34a1b81-a986-4402-a383-1bc5816a0e7e_wgs_gdc_realn.bam 59675089295 BAM hg38 dab304ed-18fc-4407-b298-b1c9e04fadbf storage1 +C3N-03796.WXS.N.hg38 C3N-03796 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9b469ca-78ae-4955-b0cc-678779308d56/108e1690-f144-4cef-a077-4bf4a30f3205_wxs_gdc_realn.bam 29516421065 BAM hg38 c9b469ca-78ae-4955-b0cc-678779308d56 storage1 +C3N-03796.WXS.T.hg38 C3N-03796 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afc3e47c-e82c-4335-a2da-fbf630370f1c/a34a1b81-a986-4402-a383-1bc5816a0e7e_wxs_gdc_realn.bam 28580878405 BAM hg38 afc3e47c-e82c-4335-a2da-fbf630370f1c storage1 C3N-03797.WGS.N.hg38 C3N-03797 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c8df50e5-603b-4afa-987d-53514939e122/966c6951-4f60-4deb-8ffe-9c5954afab8e_wgs_gdc_realn.bam 109141152803 BAM hg38 c8df50e5-603b-4afa-987d-53514939e122 storage1 C3N-03797.WGS.T.hg38 C3N-03797 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9ef14794-ec5b-4756-b14e-78e0a5b5f791/422a6465-56ff-4265-bb86-43cf4b882e46_wgs_gdc_realn.bam 65793765773 BAM hg38 9ef14794-ec5b-4756-b14e-78e0a5b5f791 storage1 +C3N-03797.WXS.N.hg38 C3N-03797 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d6247145-875d-4914-adf0-8b436ca75f7a/966c6951-4f60-4deb-8ffe-9c5954afab8e_wxs_gdc_realn.bam 36770309194 BAM hg38 d6247145-875d-4914-adf0-8b436ca75f7a storage1 +C3N-03797.WXS.T.hg38 C3N-03797 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e8e6d27b-1138-4d47-a6f5-2a6035dcb281/422a6465-56ff-4265-bb86-43cf4b882e46_wxs_gdc_realn.bam 27735760494 BAM hg38 e8e6d27b-1138-4d47-a6f5-2a6035dcb281 storage1 C3N-03800.RNA-Seq.R1.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a6980cb7-4d87-452d-ace8-f2419ef4d665/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R1_001.fastq.gz 3213517172 FASTQ NA a6980cb7-4d87-452d-ace8-f2419ef4d665 storage1 C3N-03800.RNA-Seq.R2.T C3N-03800 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9082c1c1-5abd-4a0e-8f6e-750b5dff16e8/200204_UNC31-K00269_0263_AHG2CJBBXY_CGTTAGAA-TTCAGGTC_S26_L007_R2_001.fastq.gz 3740273114 FASTQ NA 9082c1c1-5abd-4a0e-8f6e-750b5dff16e8 storage1 C3N-03800.WGS.N.hg38 C3N-03800 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c6e99476-96a8-4730-89ef-026f274e9488/74161594-9926-4852-9bef-076363ce5266_wgs_gdc_realn.bam 75210206981 BAM hg38 c6e99476-96a8-4730-89ef-026f274e9488 storage1 C3N-03800.WGS.T.hg38 C3N-03800 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24e3c427-04e9-489a-bbf6-4015af0f9693/27ccdf5d-88bc-4b87-be27-161ef297a99d_wgs_gdc_realn.bam 77812358866 BAM hg38 24e3c427-04e9-489a-bbf6-4015af0f9693 storage1 +C3N-03800.WXS.N.hg38 C3N-03800 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca9914cc-5a12-4203-9c17-2de3a52076c9/74161594-9926-4852-9bef-076363ce5266_wxs_gdc_realn.bam 43605032937 BAM hg38 ca9914cc-5a12-4203-9c17-2de3a52076c9 storage1 +C3N-03800.WXS.T.hg38 C3N-03800 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b91c3e29-9d7c-4b06-b11c-4766adffd8b0/27ccdf5d-88bc-4b87-be27-161ef297a99d_wxs_gdc_realn.bam 35179857229 BAM hg38 b91c3e29-9d7c-4b06-b11c-4766adffd8b0 storage1 C3N-03802.RNA-Seq.R1.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/255a8e1c-dc69-4ec7-a76f-1877b51b4f23/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R1_001.fastq.gz 3772884953 FASTQ NA 255a8e1c-dc69-4ec7-a76f-1877b51b4f23 storage1 C3N-03802.RNA-Seq.R2.T C3N-03802 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f86f26d6-0c6b-4120-b71f-4fd632f2ec9c/200204_UNC31-K00269_0263_AHG2CJBBXY_AGCCTCAT-AGTAGAGA_S27_L007_R2_001.fastq.gz 4271333174 FASTQ NA f86f26d6-0c6b-4120-b71f-4fd632f2ec9c storage1 C3N-03802.WGS.N.hg38 C3N-03802 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5ac4339-e870-47cf-99c4-4c305dfbcae8/21f596c1-4a26-44b2-8c1b-4697d7884d6f_wgs_gdc_realn.bam 70976473049 BAM hg38 d5ac4339-e870-47cf-99c4-4c305dfbcae8 storage1 C3N-03802.WGS.T.hg38 C3N-03802 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/14a6db1a-bd53-439a-9fe3-850628f370de/dbd9368c-c526-4f91-b575-85678ca920d4_wgs_gdc_realn.bam 98847773464 BAM hg38 14a6db1a-bd53-439a-9fe3-850628f370de storage1 +C3N-03802.WXS.N.hg38 C3N-03802 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/873a455c-8270-4254-8033-313e94158f63/21f596c1-4a26-44b2-8c1b-4697d7884d6f_wxs_gdc_realn.bam 42162146910 BAM hg38 873a455c-8270-4254-8033-313e94158f63 storage1 +C3N-03802.WXS.T.hg38 C3N-03802 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f485b85f-858c-41c8-99a5-02d2f889894b/dbd9368c-c526-4f91-b575-85678ca920d4_wxs_gdc_realn.bam 37570077761 BAM hg38 f485b85f-858c-41c8-99a5-02d2f889894b storage1 C3N-03810.RNA-Seq.R1.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8fbe432e-3582-4d23-ae52-931b334f2112/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R1_001.fastq.gz 3007935186 FASTQ NA 8fbe432e-3582-4d23-ae52-931b334f2112 storage1 C3N-03810.RNA-Seq.R2.T C3N-03810 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c9bb314d-81a3-4b4a-b3c8-935f7db8d048/200204_UNC31-K00269_0263_AHG2CJBBXY_GATTCTGC-GACGAGAG_S28_L007_R2_001.fastq.gz 3415547135 FASTQ NA c9bb314d-81a3-4b4a-b3c8-935f7db8d048 storage1 C3N-03810.WGS.N.hg38 C3N-03810 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f081684-661c-4114-87e5-3ea5943244f4/ca49ed01-ced5-4674-95c9-b77361506dbc_wgs_gdc_realn.bam 70217504692 BAM hg38 4f081684-661c-4114-87e5-3ea5943244f4 storage1 C3N-03810.WGS.T.hg38 C3N-03810 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a8a0945-b68b-403f-8883-e04140b8e788/cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wgs_gdc_realn.bam 86575296711 BAM hg38 7a8a0945-b68b-403f-8883-e04140b8e788 storage1 +C3N-03810.WXS.N.hg38 C3N-03810 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b4157794-616f-4717-8a72-45784b5619d4/ca49ed01-ced5-4674-95c9-b77361506dbc_wxs_gdc_realn.bam 39782441736 BAM hg38 b4157794-616f-4717-8a72-45784b5619d4 storage1 +C3N-03810.WXS.T.hg38 C3N-03810 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2077b46c-6a73-4349-a5a8-a189fba4a1d0/cd3a6bd9-59f6-4fa4-91bb-46d54ca06db9_wxs_gdc_realn.bam 30576782514 BAM hg38 2077b46c-6a73-4349-a5a8-a189fba4a1d0 storage1 C3N-03837.WGS.N.hg38 C3N-03837 HNSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6cdb8054-2db6-430b-a978-7837cc0f271c/21c4c00d-3d39-4548-94de-36c1c2a6b931_wgs_gdc_realn.bam 119892775142 BAM hg38 6cdb8054-2db6-430b-a978-7837cc0f271c storage1 C3N-03837.WGS.T.hg38 C3N-03837 HNSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/430c387b-4885-45bb-9e9e-d03b4100d0f7/662fe48b-3316-48a4-b9ff-478577986b86_wgs_gdc_realn.bam 92269320265 BAM hg38 430c387b-4885-45bb-9e9e-d03b4100d0f7 storage1 C3N-03839.RNA-Seq.genomic.T.hg38 C3N-03839 PDA RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7947df45-0014-4125-b8fe-e0ba0d5a696f/fb6b8765-0054-4037-8d11-60e1f6fa8d37.rna_seq.genomic.gdc_realn.bam 8203129165 BAM hg38 7947df45-0014-4125-b8fe-e0ba0d5a696f storage1 @@ -3931,30 +4033,44 @@ C3N-03935.RNA-Seq.R1.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-03935.RNA-Seq.R2.T C3N-03935 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/87079c71-53a8-4bf0-925d-e914da7bfd96/200204_UNC31-K00269_0263_AHG2CJBBXY_TCGTAGTG-AGACTTGG_S29_L008_R2_001.fastq.gz 3603920661 FASTQ NA 87079c71-53a8-4bf0-925d-e914da7bfd96 storage1 C3N-03935.WGS.N.hg38 C3N-03935 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8d17e3f0-ff4c-4b01-a090-2dc7d653f96e/6d9e79c5-a520-4b3b-bae8-a483281851f4_wgs_gdc_realn.bam 65995432537 BAM hg38 8d17e3f0-ff4c-4b01-a090-2dc7d653f96e storage1 C3N-03935.WGS.T.hg38 C3N-03935 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/abd5362c-b11a-4cfb-9751-6b1041f319cb/9e503f81-06bd-4083-8f68-04dab904125f_wgs_gdc_realn.bam 73242802527 BAM hg38 abd5362c-b11a-4cfb-9751-6b1041f319cb storage1 +C3N-03935.WXS.N.hg38 C3N-03935 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aff2f741-3432-47fc-a21a-121927b7e96c/6d9e79c5-a520-4b3b-bae8-a483281851f4_wxs_gdc_realn.bam 44665231448 BAM hg38 aff2f741-3432-47fc-a21a-121927b7e96c storage1 +C3N-03935.WXS.T.hg38 C3N-03935 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f4e94091-101c-40bb-bce6-404972b3fa7e/9e503f81-06bd-4083-8f68-04dab904125f_wxs_gdc_realn.bam 43446340788 BAM hg38 f4e94091-101c-40bb-bce6-404972b3fa7e storage1 C3N-03939.RNA-Seq.R1.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3f4dd232-5cba-4b97-bd63-f47967a5436a/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R1_001.fastq.gz 2881386932 FASTQ NA 3f4dd232-5cba-4b97-bd63-f47967a5436a storage1 C3N-03939.RNA-Seq.R2.T C3N-03939 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/452a0caf-f993-41ba-9f18-1a1180aeb710/200204_UNC31-K00269_0263_AHG2CJBBXY_CTACGACA-GAGTCCAA_S30_L008_R2_001.fastq.gz 3302047909 FASTQ NA 452a0caf-f993-41ba-9f18-1a1180aeb710 storage1 C3N-03939.WGS.N.hg38 C3N-03939 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c84d71d0-5ca9-4237-bab1-93228f81c37e/6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wgs_gdc_realn.bam 81852016126 BAM hg38 c84d71d0-5ca9-4237-bab1-93228f81c37e storage1 C3N-03939.WGS.T.hg38 C3N-03939 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4ffecf2d-31f6-48ff-9829-3ad720b0f748/fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wgs_gdc_realn.bam 77742013082 BAM hg38 4ffecf2d-31f6-48ff-9829-3ad720b0f748 storage1 +C3N-03939.WXS.N.hg38 C3N-03939 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/96c5d2ef-106f-4362-a6c4-49724e0abe80/6895aee0-3fa1-49d9-9d49-2e22f2f3743b_wxs_gdc_realn.bam 34765297539 BAM hg38 96c5d2ef-106f-4362-a6c4-49724e0abe80 storage1 +C3N-03939.WXS.T.hg38 C3N-03939 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7292b808-4c7a-4240-a3d3-096db96095b1/fe1eb1b2-05b4-46f5-80e6-2f90d4dc1677_wxs_gdc_realn.bam 23051245145 BAM hg38 7292b808-4c7a-4240-a3d3-096db96095b1 storage1 C3N-04092.RNA-Seq.R1.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R1_001.fastq.gz 2896844741 FASTQ NA 34f8eb14-b9d5-4014-b2d1-ad3d3cf33a39 storage1 C3N-04092.RNA-Seq.R2.T C3N-04092 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/07a3bbdc-69c2-485b-98b2-82ada22cae69/200204_UNC31-K00269_0263_AHG2CJBBXY_TAAGTGGT-CTTAAGCC_S31_L008_R2_001.fastq.gz 3312390931 FASTQ NA 07a3bbdc-69c2-485b-98b2-82ada22cae69 storage1 C3N-04092.WGS.N.hg38 C3N-04092 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4c77804a-0e1e-449d-affb-55a849b06bc3/79ce8e10-2d6f-4d92-a58c-a34c06af7677_wgs_gdc_realn.bam 74020875117 BAM hg38 4c77804a-0e1e-449d-affb-55a849b06bc3 storage1 C3N-04092.WGS.T.hg38 C3N-04092 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2545b6fa-59be-403f-9d33-29b33c9fea27/01e34584-fe56-487f-900d-0c82daf338a0_wgs_gdc_realn.bam 74544654961 BAM hg38 2545b6fa-59be-403f-9d33-29b33c9fea27 storage1 +C3N-04092.WXS.N.hg38 C3N-04092 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bf40953c-253a-4b01-afd9-04ad79976e45/79ce8e10-2d6f-4d92-a58c-a34c06af7677_wxs_gdc_realn.bam 37382509699 BAM hg38 bf40953c-253a-4b01-afd9-04ad79976e45 storage1 +C3N-04092.WXS.T.hg38 C3N-04092 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8a591e41-81b8-497b-a030-e20bbbf8e555/01e34584-fe56-487f-900d-0c82daf338a0_wxs_gdc_realn.bam 37480467959 BAM hg38 8a591e41-81b8-497b-a030-e20bbbf8e555 storage1 C3N-04094.RNA-Seq.R1.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fa31d2b3-82b2-4734-8c22-ac89b732e8a2/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R1_001.fastq.gz 5489923938 FASTQ NA fa31d2b3-82b2-4734-8c22-ac89b732e8a2 storage1 C3N-04094.RNA-Seq.R2.T C3N-04094 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/254472af-7bd3-4dfb-9014-c2dc90560859/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGACAAC-TCCGGATT_S60_L006_R2_001.fastq.gz 6031283932 FASTQ NA 254472af-7bd3-4dfb-9014-c2dc90560859 storage1 C3N-04094.WGS.N.hg38 C3N-04094 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f93ec20-1c38-41a0-8f96-28457caad083/1890659f-5698-4b8f-a0bf-1da6b3791731_wgs_gdc_realn.bam 94794094970 BAM hg38 9f93ec20-1c38-41a0-8f96-28457caad083 storage1 C3N-04094.WGS.T.hg38 C3N-04094 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/57d06724-da21-4c7d-8738-ffd08f512893/917e08bc-e1f6-4a6f-a593-4b99445df33e_wgs_gdc_realn.bam 66930723100 BAM hg38 57d06724-da21-4c7d-8738-ffd08f512893 storage1 +C3N-04094.WXS.N.hg38 C3N-04094 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/30918018-bf91-418f-9d9f-b7d873524ee0/1890659f-5698-4b8f-a0bf-1da6b3791731_wxs_gdc_realn.bam 28904441295 BAM hg38 30918018-bf91-418f-9d9f-b7d873524ee0 storage1 +C3N-04094.WXS.T.hg38 C3N-04094 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fb8f474-4c02-4a4e-8281-6472347703c7/917e08bc-e1f6-4a6f-a593-4b99445df33e_wxs_gdc_realn.bam 32627517794 BAM hg38 0fb8f474-4c02-4a4e-8281-6472347703c7 storage1 C3N-04097.RNA-Seq.R1.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e14644a-eeec-4d36-a439-d7defafab519/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R1_001.fastq.gz 3206768037 FASTQ NA 9e14644a-eeec-4d36-a439-d7defafab519 storage1 C3N-04097.RNA-Seq.R2.T C3N-04097 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f1b1a394-d643-496b-b856-60147ea00c1a/200129_UNC31-K00269_0261_AHG2CLBBXY_ATATGGAT-CTGTATTA_S1_L004_R2_001.fastq.gz 3546803900 FASTQ NA f1b1a394-d643-496b-b856-60147ea00c1a storage1 C3N-04097.WGS.N.hg38 C3N-04097 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4784a3d9-c761-4a61-9dac-3d84eb853c59/926063e7-fbde-4313-8074-4ca104eef182_wgs_gdc_realn.bam 89113536785 BAM hg38 4784a3d9-c761-4a61-9dac-3d84eb853c59 storage1 C3N-04097.WGS.T.hg38 C3N-04097 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b206bbed-72f4-4453-b41b-7af6e8c5555a/dc8d772e-ffad-4cc1-9a32-80000b767f7b_wgs_gdc_realn.bam 86071581874 BAM hg38 b206bbed-72f4-4453-b41b-7af6e8c5555a storage1 +C3N-04097.WXS.N.hg38 C3N-04097 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9e2e52a-6327-4053-8262-66ca49ec97ee/926063e7-fbde-4313-8074-4ca104eef182_wxs_gdc_realn.bam 45034306382 BAM hg38 f9e2e52a-6327-4053-8262-66ca49ec97ee storage1 +C3N-04097.WXS.T.hg38 C3N-04097 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c394da8c-1cc9-4554-9d4a-5ac062b4aa42/dc8d772e-ffad-4cc1-9a32-80000b767f7b_wxs_gdc_realn.bam 23088909668 BAM hg38 c394da8c-1cc9-4554-9d4a-5ac062b4aa42 storage1 C3N-04098.RNA-Seq.R1.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e4772d8e-0ded-4236-8602-1b1dfe51e8df/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R1_001.fastq.gz 2769564498 FASTQ NA e4772d8e-0ded-4236-8602-1b1dfe51e8df storage1 C3N-04098.RNA-Seq.R2.T C3N-04098 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/129e4b38-443f-4cf9-8e20-f98ccef517c8/200129_UNC31-K00269_0261_AHG2CLBBXY_GCGCAAGC-TCACGCCG_S2_L004_R2_001.fastq.gz 3112888700 FASTQ NA 129e4b38-443f-4cf9-8e20-f98ccef517c8 storage1 C3N-04098.WGS.N.hg38 C3N-04098 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cf31016-4283-4728-a22e-b353f72b2ae7/6416d98a-0117-48ec-a6ea-0875e22f55aa_wgs_gdc_realn.bam 81502245485 BAM hg38 4cf31016-4283-4728-a22e-b353f72b2ae7 storage1 C3N-04098.WGS.T.hg38 C3N-04098 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/687ccc83-df37-4a60-acb8-5a6a684de758/884a7198-709f-4946-9e7a-dea9055906df_wgs_gdc_realn.bam 75917029860 BAM hg38 687ccc83-df37-4a60-acb8-5a6a684de758 storage1 +C3N-04098.WXS.N.hg38 C3N-04098 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/33f39ddb-4185-4905-81a6-52c9429067cc/6416d98a-0117-48ec-a6ea-0875e22f55aa_wxs_gdc_realn.bam 27415183845 BAM hg38 33f39ddb-4185-4905-81a6-52c9429067cc storage1 +C3N-04098.WXS.T.hg38 C3N-04098 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2002b1f2-6753-4744-aca7-282e72f76dfb/884a7198-709f-4946-9e7a-dea9055906df_wxs_gdc_realn.bam 31334787046 BAM hg38 2002b1f2-6753-4744-aca7-282e72f76dfb storage1 C3N-04100.RNA-Seq.R1.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d5d4dee6-5523-43c9-902b-c019c3a29533/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R1_001.fastq.gz 3439688996 FASTQ NA d5d4dee6-5523-43c9-902b-c019c3a29533 storage1 C3N-04100.RNA-Seq.R2.T C3N-04100 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/92f769cc-3b94-4805-bef6-3de96959e898/200218_UNC31-K00269_0266_AHGKHKBBXY_CGGAACTG-CACTACGA_S55_L005_R2_001.fastq.gz 3823577433 FASTQ NA 92f769cc-3b94-4805-bef6-3de96959e898 storage1 C3N-04100.WGS.N.hg38 C3N-04100 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4d339a11-7fe1-4768-9bce-01c4d959a1b5/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wgs_gdc_realn.bam 66740897940 BAM hg38 4d339a11-7fe1-4768-9bce-01c4d959a1b5 storage1 C3N-04100.WGS.T.hg38 C3N-04100 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6655aea0-8f5c-4a62-813f-4afe372c81a3/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wgs_gdc_realn.bam 78877872512 BAM hg38 6655aea0-8f5c-4a62-813f-4afe372c81a3 storage1 +C3N-04100.WXS.N.hg38 C3N-04100 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7c20addd-92b7-436e-b8c7-0e202439e2eb/e3fe94f7-af5a-4001-a67e-3a0a35c6cd4a_wxs_gdc_realn.bam 38615780883 BAM hg38 7c20addd-92b7-436e-b8c7-0e202439e2eb storage1 +C3N-04100.WXS.T.hg38 C3N-04100 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/645e357e-7bdf-4136-812c-e02db7f7fab0/60fd69ce-3aa4-48fc-8ee0-095e68c64b9e_wxs_gdc_realn.bam 30013568056 BAM hg38 645e357e-7bdf-4136-812c-e02db7f7fab0 storage1 C3N-04113.RNA-Seq.R1.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9f0d3283-518d-4cbe-ac56-7f4cff984a77/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R1_001.fastq.gz 3523637381 FASTQ NA 9f0d3283-518d-4cbe-ac56-7f4cff984a77 storage1 C3N-04113.RNA-Seq.R2.T C3N-04113 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95/200129_UNC31-K00269_0261_AHG2CLBBXY_AAGATACT-ACTTACAT_S3_L004_R2_001.fastq.gz 3851534424 FASTQ NA 1ce40d45-b6a8-43a9-8aa1-82b4ed1f4a95 storage1 C3N-04113.WGS.N C3N-04113 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88491985-2778-4634-b8ed-32a17626ad72/CPT0285650002.WholeGenome.RP-2158.bam 29591689611 BAM hg19 88491985-2778-4634-b8ed-32a17626ad72 storage1 @@ -4021,6 +4137,8 @@ C3N-04312.RNA-Seq.R1.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-04312.RNA-Seq.R2.T C3N-04312 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7db80f50-b30d-44fc-9bc6-e03eb048a892/200204_UNC31-K00269_0263_AHG2CJBBXY_CCAAGTCT-AAGGATGA_S5_L002_R2_001.fastq.gz 4900993669 FASTQ NA 7db80f50-b30d-44fc-9bc6-e03eb048a892 storage1 C3N-04312.WGS.N.hg38 C3N-04312 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/014f16a2-6c7b-4b66-b1a8-2e5579964f02/37205469-4d6f-486b-905f-c54392d21b4f_wgs_gdc_realn.bam 71335743020 BAM hg38 014f16a2-6c7b-4b66-b1a8-2e5579964f02 storage1 C3N-04312.WGS.T.hg38 C3N-04312 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f5e56aed-38b7-45b3-aebe-8a1da8246495/1c1ab64b-1728-442b-9e26-f37a1af24c9f_wgs_gdc_realn.bam 78477381968 BAM hg38 f5e56aed-38b7-45b3-aebe-8a1da8246495 storage1 +C3N-04312.WXS.N.hg38 C3N-04312 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8261bf69-e50f-4985-a7ff-67a826adb3b2/37205469-4d6f-486b-905f-c54392d21b4f_wxs_gdc_realn.bam 29415715888 BAM hg38 8261bf69-e50f-4985-a7ff-67a826adb3b2 storage1 +C3N-04312.WXS.T.hg38 C3N-04312 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4edbb076-c48b-46a8-9467-2ebb7b64d243/1c1ab64b-1728-442b-9e26-f37a1af24c9f_wxs_gdc_realn.bam 34483195424 BAM hg38 4edbb076-c48b-46a8-9467-2ebb7b64d243 storage1 C3N-04382.WGS.N.hg38 C3N-04382 LUAD WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ca3a7c80-24b2-4eef-a824-158c4f53e2af/88cf49b3-0b2d-4a5e-afa5-aaae77123c55_wgs_gdc_realn.bam 92048733883 BAM hg38 ca3a7c80-24b2-4eef-a824-158c4f53e2af storage1 C3N-04382.WGS.T.hg38 C3N-04382 LUAD WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1b1f792a-6c78-41a7-be1b-b7ff70c43db3/ac407b00-f068-483f-b21e-9b5cada5daf4_wgs_gdc_realn.bam 115434713550 BAM hg38 1b1f792a-6c78-41a7-be1b-b7ff70c43db3 storage1 C3N-04457.WGS.N.hg38 C3N-04457 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0fbcbb37-b611-468e-bd5a-ffa8a2c24894/0f0cf4d8-bb22-4f10-a486-5277dc30f309_wgs_gdc_realn.bam 67836384995 BAM hg38 0fbcbb37-b611-468e-bd5a-ffa8a2c24894 storage1 @@ -4035,28 +4153,42 @@ C3N-04683.RNA-Seq.R1.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/ C3N-04683.RNA-Seq.R2.T C3N-04683 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e7334afa-2cbe-448d-9768-0bff2678dec7/200218_UNC31-K00269_0266_AHGKHKBBXY_AGCTCGCT-GCAGAATC_S64_L007_R2_001.fastq.gz 3777387208 FASTQ NA e7334afa-2cbe-448d-9768-0bff2678dec7 storage1 C3N-04683.WGS.N.hg38 C3N-04683 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3bee196-c66b-45c1-92f3-fb04a65c0b65/83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wgs_gdc_realn.bam 71643728765 BAM hg38 f3bee196-c66b-45c1-92f3-fb04a65c0b65 storage1 C3N-04683.WGS.T.hg38 C3N-04683 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9e7543c1-4ea4-4c3c-96ca-788a5933eb1b/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wgs_gdc_realn.bam 78260836985 BAM hg38 9e7543c1-4ea4-4c3c-96ca-788a5933eb1b storage1 +C3N-04683.WXS.N.hg38 C3N-04683 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cd843ae-9cf6-4d57-84d1-d569c1e95ddf/83bf1b55-2bfa-4587-a84d-8e413f9fb0c0_wxs_gdc_realn.bam 31548967163 BAM hg38 4cd843ae-9cf6-4d57-84d1-d569c1e95ddf storage1 +C3N-04683.WXS.T.hg38 C3N-04683 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/eb548d65-f75d-43a2-8ff7-91f8654f2ea7/caea80b3-44ef-4e4b-a5a5-91889e0ca761_wxs_gdc_realn.bam 29106959762 BAM hg38 eb548d65-f75d-43a2-8ff7-91f8654f2ea7 storage1 C3N-04686.RNA-Seq.R1.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/157280cb-210f-407f-997c-cbd5fbd18578/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R1_001.fastq.gz 4034400313 FASTQ NA 157280cb-210f-407f-997c-cbd5fbd18578 storage1 C3N-04686.RNA-Seq.R2.T C3N-04686 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6d47e078-6b42-4a7e-abcc-5a82b3dfd843/200212_UNC31-K00269_0265_BHGCWGBBXY_AACAGGTT-ATACCAAG_S14_L004_R2_001.fastq.gz 4294925927 FASTQ NA 6d47e078-6b42-4a7e-abcc-5a82b3dfd843 storage1 C3N-04686.WGS.N.hg38 C3N-04686 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1617d7cd-32d7-40c4-92a8-c7d33265aeea/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wgs_gdc_realn.bam 66143723882 BAM hg38 1617d7cd-32d7-40c4-92a8-c7d33265aeea storage1 C3N-04686.WGS.T.hg38 C3N-04686 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/59582a18-0dfc-420d-bfbd-dfd9aac6c58a/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wgs_gdc_realn.bam 79483468119 BAM hg38 59582a18-0dfc-420d-bfbd-dfd9aac6c58a storage1 +C3N-04686.WXS.N.hg38 C3N-04686 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8/04d7ff8e-1924-477d-a04b-5eaef2815a7d_wxs_gdc_realn.bam 36653203165 BAM hg38 f98cea6a-c974-4fb9-ab2d-fdd17f6e0cf8 storage1 +C3N-04686.WXS.T.hg38 C3N-04686 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/349a677b-4595-415c-b4ba-774a966c92c7/c5c81116-8317-4cbd-89c7-d189c6bd58d5_wxs_gdc_realn.bam 29534710079 BAM hg38 349a677b-4595-415c-b4ba-774a966c92c7 storage1 C3N-04687.WGS.N.hg38 C3N-04687 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a12ebbd1-84fa-441b-8b7e-019cbde83059/89cc8a15-7059-48f4-b028-36add2ef000e_wgs_gdc_realn.bam 82172701135 BAM hg38 a12ebbd1-84fa-441b-8b7e-019cbde83059 storage1 C3N-04687.WGS.T.hg38 C3N-04687 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0e2b89fc-c483-476d-96f9-d0dcdbcec179/8d5b75ae-e777-4df1-8837-4a71d060d681_wgs_gdc_realn.bam 70782620714 BAM hg38 0e2b89fc-c483-476d-96f9-d0dcdbcec179 storage1 +C3N-04687.WXS.N.hg38 C3N-04687 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/24cdf0cb-e910-4e7b-854d-88a58b9fc6cd/89cc8a15-7059-48f4-b028-36add2ef000e_wxs_gdc_realn.bam 34658403577 BAM hg38 24cdf0cb-e910-4e7b-854d-88a58b9fc6cd storage1 +C3N-04687.WXS.T.hg38 C3N-04687 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/56d88fed-d037-4804-a093-b009c714bd85/8d5b75ae-e777-4df1-8837-4a71d060d681_wxs_gdc_realn.bam 25765521874 BAM hg38 56d88fed-d037-4804-a093-b009c714bd85 storage1 C3N-04691.RNA-Seq.R1.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8b611a73-3ec3-456e-95fd-6f25ee476c28/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R1_001.fastq.gz 3454065249 FASTQ NA 8b611a73-3ec3-456e-95fd-6f25ee476c28 storage1 C3N-04691.RNA-Seq.R2.T C3N-04691 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/0a016bfe-4773-486e-be6e-af9ed353c9b5/200212_UNC31-K00269_0265_BHGCWGBBXY_ATATCTCG-ATCTTAGT_S12_L004_R2_001.fastq.gz 3703572856 FASTQ NA 0a016bfe-4773-486e-be6e-af9ed353c9b5 storage1 C3N-04691.WGS.N.hg38 C3N-04691 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a1f5582-fc6d-4c7f-9da4-b605a67108ea/cdd22aae-ff9d-430d-a275-1da5f8befaab_wgs_gdc_realn.bam 69525083202 BAM hg38 7a1f5582-fc6d-4c7f-9da4-b605a67108ea storage1 C3N-04691.WGS.T.hg38 C3N-04691 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/705077f1-277d-46d7-85d6-3248b1d8a3db/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wgs_gdc_realn.bam 79639650961 BAM hg38 705077f1-277d-46d7-85d6-3248b1d8a3db storage1 +C3N-04691.WXS.N.hg38 C3N-04691 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3/cdd22aae-ff9d-430d-a275-1da5f8befaab_wxs_gdc_realn.bam 37966628766 BAM hg38 c29cd23d-cb0e-4e1a-a99d-d9a5d277f5e3 storage1 +C3N-04691.WXS.T.hg38 C3N-04691 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4cfd40cf-be18-4ded-aafc-26e3705fb482/c16ac24a-8463-4a2c-b866-a84b9a7fe0ee_wxs_gdc_realn.bam 32312688782 BAM hg38 4cfd40cf-be18-4ded-aafc-26e3705fb482 storage1 C3N-04693.RNA-Seq.R1.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/95e19f64-f558-4704-b020-3cc06287e7f4/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R1_001.fastq.gz 5469084994 FASTQ NA 95e19f64-f558-4704-b020-3cc06287e7f4 storage1 C3N-04693.RNA-Seq.R2.T C3N-04693 GBM RNA-Seq tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7144248c-c457-48a8-bd20-e742f014d9bd/200505_UNC32-K00270_0245_AHH5FVBBXY_CCGCGGTT-AGCGCTAG_S1_L001_R2_001.fastq.gz 6147478036 FASTQ NA 7144248c-c457-48a8-bd20-e742f014d9bd storage1 C3N-04693.WGS.N.hg38 C3N-04693 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/de5ee410-fb28-490e-81a9-60d05e4039f8/b996ab8e-ae14-42ed-ac60-b74d932c0460_wgs_gdc_realn.bam 63795296473 BAM hg38 de5ee410-fb28-490e-81a9-60d05e4039f8 storage1 C3N-04693.WGS.T.hg38 C3N-04693 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ccc9794f-4efc-4284-8b1c-2cb5fc33e957/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wgs_gdc_realn.bam 86972627335 BAM hg38 ccc9794f-4efc-4284-8b1c-2cb5fc33e957 storage1 +C3N-04693.WXS.N.hg38 C3N-04693 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6fb6bf47-d501-4858-ba49-6e2cd516474a/b996ab8e-ae14-42ed-ac60-b74d932c0460_wxs_gdc_realn.bam 40597818463 BAM hg38 6fb6bf47-d501-4858-ba49-6e2cd516474a storage1 +C3N-04693.WXS.T.hg38 C3N-04693 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e/27f4dc0c-6231-4650-a00e-9ccc4e942c89_wxs_gdc_realn.bam 66369099884 BAM hg38 e5ba5d47-c6ad-4e72-83c6-5de2bf693d0e storage1 C3N-04695.WGS.N.hg38 C3N-04695 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fab7e8e1-714b-4798-9ef7-1612394e55d5/dc406b2d-e0c8-49bf-b1b1-7e1929833382_wgs_gdc_realn.bam 66383764365 BAM hg38 fab7e8e1-714b-4798-9ef7-1612394e55d5 storage1 C3N-04695.WGS.T.hg38 C3N-04695 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1892aa40-a858-4f1d-a3ee-24e84b7d6216/d7f885b4-11bb-4eef-81bf-74643b30908c_wgs_gdc_realn.bam 83658438448 BAM hg38 1892aa40-a858-4f1d-a3ee-24e84b7d6216 storage1 +C3N-04695.WXS.N.hg38 C3N-04695 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3bbdc094-e064-4c89-afec-bf59940cfe16/dc406b2d-e0c8-49bf-b1b1-7e1929833382_wxs_gdc_realn.bam 32304960170 BAM hg38 3bbdc094-e064-4c89-afec-bf59940cfe16 storage1 +C3N-04695.WXS.T.hg38 C3N-04695 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f792ee2a-c245-4f1f-9ffc-6a9d7178a770/d7f885b4-11bb-4eef-81bf-74643b30908c_wxs_gdc_realn.bam 33758326958 BAM hg38 f792ee2a-c245-4f1f-9ffc-6a9d7178a770 storage1 C3N-04701.WGS.N.hg38 C3N-04701 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ff0ab924-09a0-4169-af5a-304760c894ed/dea222cc-4710-482a-b1b9-12cfc82f8bb2_wgs_gdc_realn.bam 78569442278 BAM hg38 ff0ab924-09a0-4169-af5a-304760c894ed storage1 C3N-04701.WGS.T.hg38 C3N-04701 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5305bb2a-ddee-4206-92c2-f11f72ce674c/a5c1bd98-d6d5-4c56-9678-10c596b60c35_wgs_gdc_realn.bam 61905934854 BAM hg38 5305bb2a-ddee-4206-92c2-f11f72ce674c storage1 C3N-04713.WGS.N.hg38 C3N-04713 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/fe118dcc-3a00-4479-a4cb-afe06060bf5f/abcb9f24-8fc3-4847-81c8-9ba7a653708b_wgs_gdc_realn.bam 67710228475 BAM hg38 fe118dcc-3a00-4479-a4cb-afe06060bf5f storage1 C3N-04713.WGS.T.hg38 C3N-04713 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f3b5fe92-eb38-46c1-a633-55a42207db59/12d287b2-1cfd-443b-8d67-6b536b763eb1_wgs_gdc_realn.bam 68261205290 BAM hg38 f3b5fe92-eb38-46c1-a633-55a42207db59 storage1 C3N-05039.WGS.N.hg38 C3N-05039 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/05fa37fb-0df8-498f-8f7f-14f9a735c215/e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wgs_gdc_realn.bam 69461606241 BAM hg38 05fa37fb-0df8-498f-8f7f-14f9a735c215 storage1 C3N-05039.WGS.T.hg38 C3N-05039 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/03e5daf7-cc04-4a52-855a-8f776d8655a5/fe17632c-e4bd-4c42-aa43-255206b1a97b_wgs_gdc_realn.bam 82840854167 BAM hg38 03e5daf7-cc04-4a52-855a-8f776d8655a5 storage1 +C3N-05039.WXS.N.hg38 C3N-05039 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b528bf8e-bae9-4d91-8d62-1746ba1a1ac0/e1965bd7-ba72-47a9-b81d-d42f2b1cf4c0_wxs_gdc_realn.bam 41040654784 BAM hg38 b528bf8e-bae9-4d91-8d62-1746ba1a1ac0 storage1 +C3N-05039.WXS.T.hg38 C3N-05039 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9b5da686-f797-4f86-b29f-790686e55120/fe17632c-e4bd-4c42-aa43-255206b1a97b_wxs_gdc_realn.bam 32616896013 BAM hg38 9b5da686-f797-4f86-b29f-790686e55120 storage1 C3N-05078.WGS.N.hg38 C3N-05078 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/aaca2d93-2662-44b2-b37b-e819c5a0d346/0f680ce2-70af-4ffd-a3de-f38fd6d35eb2_wgs_gdc_realn.bam 75564564438 BAM hg38 aaca2d93-2662-44b2-b37b-e819c5a0d346 storage1 C3N-05078.WGS.T.hg38 C3N-05078 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ecbfef91-e2f0-4b29-926b-a3611f97331f/81268520-0222-48f1-8b38-865b7d274018_wgs_gdc_realn.bam 65095127623 BAM hg38 ecbfef91-e2f0-4b29-926b-a3611f97331f storage1 C3N-05079.WGS.N.hg38 C3N-05079 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/77f97a94-18b9-4cb0-8b97-498eb2a9b441/cc6e30e4-a477-48c7-b201-528211f3d5df_wgs_gdc_realn.bam 65080632447 BAM hg38 77f97a94-18b9-4cb0-8b97-498eb2a9b441 storage1 @@ -4067,8 +4199,12 @@ C3N-05100.WGS.N.hg38 C3N-05100 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowsk C3N-05100.WGS.T.hg38 C3N-05100 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e32667cf-b7d8-4ec2-a63a-17497134fd97/5ef62f88-5293-4a68-a523-50eacbd2dc9b_wgs_gdc_realn.bam 57763506632 BAM hg38 e32667cf-b7d8-4ec2-a63a-17497134fd97 storage1 C3N-05114.WGS.N.hg38 C3N-05114 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wgs_gdc_realn.bam 69989761070 BAM hg38 ef9d1a5b-f32b-4ec6-b19f-6d9bfe1ba0ae storage1 C3N-05114.WGS.T.hg38 C3N-05114 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wgs_gdc_realn.bam 92653420444 BAM hg38 4bc03bd1-7e7d-4e7e-bb72-d051e939f4f6 storage1 +C3N-05114.WXS.N.hg38 C3N-05114 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec6ae616-4341-4d27-8a50-698388968128/e8446ae9-fcf6-48e3-8073-0b0ba6396588_wxs_gdc_realn.bam 34460031755 BAM hg38 ec6ae616-4341-4d27-8a50-698388968128 storage1 +C3N-05114.WXS.T.hg38 C3N-05114 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bede02c2-63fa-4694-bf71-778ceb6bf864/5169afe8-1fb1-459b-b5b6-f28129bc1de1_wxs_gdc_realn.bam 29470990817 BAM hg38 bede02c2-63fa-4694-bf71-778ceb6bf864 storage1 C3N-05135.WGS.N.hg38 C3N-05135 GBM WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/5dc48332-6ed2-417b-958f-c1595135fa9e/d69369cc-a994-4e4f-af13-4948398b347b_wgs_gdc_realn.bam 68301546626 BAM hg38 5dc48332-6ed2-417b-958f-c1595135fa9e storage1 C3N-05135.WGS.T.hg38 C3N-05135 GBM WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c50b159a-8d6b-4760-afff-db1dce9ff738/f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wgs_gdc_realn.bam 79724813019 BAM hg38 c50b159a-8d6b-4760-afff-db1dce9ff738 storage1 +C3N-05135.WXS.N.hg38 C3N-05135 GBM WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/98ae81ee-90ef-4c56-8a69-5c5b73fecfec/d69369cc-a994-4e4f-af13-4948398b347b_wxs_gdc_realn.bam 34914215861 BAM hg38 98ae81ee-90ef-4c56-8a69-5c5b73fecfec storage1 +C3N-05135.WXS.T.hg38 C3N-05135 GBM WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e098c85d-4df0-4dfb-84e9-3bf91a4e3491/f00c2f88-4ae1-4bfc-8d04-8f2c4daa2515_wxs_gdc_realn.bam 31921769918 BAM hg38 e098c85d-4df0-4dfb-84e9-3bf91a4e3491 storage1 C3N-05629.WGS.N.hg38 C3N-05629 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f50609fc-9226-4f82-a225-48e4491d6e1a/52e2a19b-f6a8-4484-86b7-fed2cb4438e9_wgs_gdc_realn.bam 75748276047 BAM hg38 f50609fc-9226-4f82-a225-48e4491d6e1a storage1 C3N-05629.WGS.T.hg38 C3N-05629 LSCC WGS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c1ae0af0-8e3d-48fd-81da-7364eaca0c00/392cdd57-f49f-436c-88b4-556f2a60586a_wgs_gdc_realn.bam 64929840130 BAM hg38 c1ae0af0-8e3d-48fd-81da-7364eaca0c00 storage1 C3N-05914.WGS.N.hg38 C3N-05914 LSCC WGS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5b9dad9-61b5-4b00-b76e-d1964d9932bb/8f68f68a-13a5-4085-a115-17a6701ab6fd_wgs_gdc_realn.bam 67977021003 BAM hg38 a5b9dad9-61b5-4b00-b76e-d1964d9932bb storage1